Gcaud3360.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3360.t1
Unique NameGcaud3360.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length183
Homology
BLAST of Gcaud3360.t1 vs. uniprot
Match: A0A2V3IJP4_9FLOR (Ribonuclease P protein component 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJP4_9FLOR)

HSP 1 Score: 198 bits (504), Expect = 7.370e-62
Identity = 109/184 (59.24%), Postives = 126/184 (68.48%), Query Frame = 0
Query:    1 MGQKRF-KGNAKKKKAPREEDAALRLTHLIAASTILSERAPSVSKFYARTSRQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLVVKCGHCGFVKRYLARNPEQSMAKGKKVKTSNMEREVDDS-HDKTTEPKPNEDLQLRAANRATLTRGQEVNPWFQWPSNNCKVQ 182
            M +KRF K  AKKKK PREEDAALRLTHLIAAS ILSE APSVS+FYA  S+QICRRVN+TLDSV+VKRLFCKKCN+ L+PGVG P  TYRIASRRERHLV+KCG CG +KRYLAR+P Q   + +K K  + ER+ D + +D   E              A     Q  N W  W S  C +Q
Sbjct:    1 MTRKRFDKAGAKKKKIPREEDAALRLTHLIAASAILSENAPSVSRFYAHASKQICRRVNMTLDSVTVKRLFCKKCNTCLIPGVGTPQPTYRIASRRERHLVIKCGRCGVLKRYLARSPAQESKRKRKDKVLDTERDSDSAGYDAMEEDSRGRVRGPIGRTSAAPAANQGRNSWSGWASQKCMMQ 184          
BLAST of Gcaud3360.t1 vs. uniprot
Match: A0A7S4IDM6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IDM6_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 8.380e-11
Identity = 40/111 (36.04%), Postives = 69/111 (62.16%), Query Frame = 0
Query:    8 GNAKK-KKAPREEDAALRLTHLIAASTILSERAPSVSKFYARTSRQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLVVKCGHCGFVKRYLARNP 117
            G AK+ +KA R++D+ +R+  L  A+ ++ + + +  +    T R I  R +++  + S+K+ FCK+C+S LLPG+     T+RI S+R+ H+V+ C  CG VKRY  + P
Sbjct:    7 GKAKRTQKAQRQDDSKVRMNFLFQAAHVVPQDSET-PRALIDTMRHIGTR-SVSSMNTSLKKEFCKRCSSLLLPGI---TCTHRIRSKRQTHVVITCNSCGNVKRYNTKPP 112          
BLAST of Gcaud3360.t1 vs. uniprot
Match: UPI0018894009 (ribonuclease P protein subunit p21-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018894009)

HSP 1 Score: 61.2 bits (147), Expect = 1.100e-8
Identity = 42/103 (40.78%), Postives = 52/103 (50.49%), Query Frame = 0
Query:   20 DAALRLTHLIAASTILSERAPS---VSKFYARTSRQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLVVKCGHCGFVKRYLARNPEQ 119
            DA  R+  L   +  + E+ PS   V+ FY      I RRV   LD  S+KR  CKKC+  L PGV       R +  R + LVVKC HCG VKR+  R   Q
Sbjct:    8 DAFHRMNFLYQVANKVLEQDPSAGRVASFYGHVLHMISRRVQAKLDP-SIKRSLCKKCSVLLFPGV-TCTERLRASPGRGQRLVVKCLHCGAVKRFPTRRGYQ 108          
BLAST of Gcaud3360.t1 vs. uniprot
Match: A0A7J2H759_9CREN (Ribonuclease P protein component 4 n=2 Tax=Thermoprotei TaxID=183924 RepID=A0A7J2H759_9CREN)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-6
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   21 AALRLTHLIAASTILSERAPSVSKFYARTSRQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLVVKCGHCGFVKRYL 113
            A  R+  L++ +  + +R   +++ Y   + ++  +  L L    V+R +C++C   L+PG+    A  R+ SRR+RH+VV C  CG+V+RY+
Sbjct:   11 ARQRIWILLSLADNVVKRDQELARRYVALALKLAAKARLRLPR-DVRRRYCRRCKVPLIPGL---TARVRVRSRRQRHIVVTCLKCGYVRRYV 99          
BLAST of Gcaud3360.t1 vs. uniprot
Match: A0A672FHT4_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672FHT4_SALFA)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-6
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   17 REEDAALRLTHLI-AASTILSERAPSV--SKFYARTSRQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLVVKCGHCGFVKRYLARNPEQSM 121
            ++++A  RL  L  AA  +L++   +V  ++FY  T + I RR+ L  D  SVKR FCKKC S L+PG+       ++  +  R  V+KC  CG  K +L  NP+ S+
Sbjct:    6 KDKEAFQRLNFLYQAAHCVLTQNPENVELARFYCFTQKTITRRLVLRQDP-SVKRNFCKKCCSLLIPGLTATTRQKKLRGK-NRFTVIKCVLCGQSKTFL-NNPDHSL 110          
The following BLAST results are available for this feature:
BLAST of Gcaud3360.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IJP4_9FLOR7.370e-6259.24Ribonuclease P protein component 4 n=1 Tax=Gracila... [more]
A0A7S4IDM6_9EUKA8.380e-1136.04Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI00188940091.100e-840.78ribonuclease P protein subunit p21-like n=1 Tax=Rh... [more]
A0A7J2H759_9CREN1.100e-631.18Ribonuclease P protein component 4 n=2 Tax=Thermop... [more]
A0A672FHT4_SALFA1.730e-637.04Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.20.50.20coord: 68..124
e-value: 2.4E-14
score: 54.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..149
NoneNo IPR availablePANTHERPTHR14742RIBONUCLEASE P SUBUNIT P21coord: 6..145
IPR007175Ribonuclease P subunit, Rpr2/Snm1/Rpp21PFAMPF04032Rpr2coord: 24..107
e-value: 1.0E-12
score: 48.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_179_length_39915_cov_4.496535contigNODE_179_length_39915_cov_4.496535:10475..11023 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3360.t1Gcaud3360.t1Gracilaria caudata M_176_S67 malemRNANODE_179_length_39915_cov_4.496535 10475..11023 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=183bp
MGQKRFKGNAKKKKAPREEDAALRLTHLIAASTILSERAPSVSKFYARTS
RQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLV
VKCGHCGFVKRYLARNPEQSMAKGKKVKTSNMEREVDDSHDKTTEPKPNE
DLQLRAANRATLTRGQEVNPWFQWPSNNCKVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007175Rpr2/Snm1/Rpp21