Gcaud3361.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3361.t1
Unique Name	Gcaud3361.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_179_length_39915_cov_4.496535	contig	NODE_179_length_39915_cov_4.496535:14363..15412 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	34349.G7E319
PFAMs	BPL_LplA_LipB,Lip_prot_lig_C
Max annot lvl	4751\|Fungi
KEGG rclass	RC00043,RC00070,RC00090,RC00992,RC02896
KEGG ko	ko:K03800
KEGG Reaction	R07770,R07771,R11143
KEGG Pathway	ko00785,ko01100,map00785,map01100
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016772,GO:0016779,GO:0016874,GO:0016879,GO:0016979,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0071704,GO:0140096,GO:1901564
Evalue	3.57e-44
EggNOG OGs	COG0095@1\|root,KOG3159@2759\|Eukaryota,38IBB@33154\|Opisthokonta,3NTYI@4751\|Fungi,3UZA8@5204\|Basidiomycota,2YDYT@29000\|Pucciniomycotina
EC	6.3.1.20
Description	lipoyltransferase and lipoate-protein ligase
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3361	Gcaud3361	Gracilaria caudata M_176_S67 male	gene	NODE_179_length_39915_cov_4.496535 14363..15412 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3361.t1.stop1	Gcaud3361.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_179_length_39915_cov_4.496535 14363..14365 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3361.t1.CDS1	Gcaud3361.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_179_length_39915_cov_4.496535 14363..15412 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3361.t1.exon1	Gcaud3361.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_179_length_39915_cov_4.496535 14363..15412 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3361.t1.start1	Gcaud3361.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_179_length_39915_cov_4.496535 15410..15412 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3361.t1	Gcaud3361.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_179_length_39915_cov_4.496535 14363..15412 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_179_length_39915_cov_4.496535:14363..15412-
coding sequence from alignment at NODE_179_length_39915_cov_4.496535:14363..15412-

mRNA sequence

>Gcaud3361.t1 ID=Gcaud3361.t1|Name=Gcaud3361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
MNTTRILLLRARNAFSNLAAEERLLLASKKQTLLLYINSPCVILGRTQNA
FKEADISYAKQEQVSIMRRRSGGGTVVHDEGNVNFCWMTSRDEYSPHKAA
TMIAEMLQSELNISATVNERADILVEGMKVSGAAYRITGNRAYHHGTLLV
DSDLVRLSRVLRSPLRDELHASGTQSIRSTVTNISMHNSITTEQMMQAVA
ARFGGSANVEEVDPYQLEDFRKERDELSSHAWVYGQTPRFHYEAQVDSNT
HLTLYARKGGVVENVVVKTSVDGVEDDLRHAVVGCAFDGADLAHGIRTQV
ESGGIKGAFFMRVADFVEEHIPQQFWRSERDELHFDGEGSYAAPSSSRT*

spliced messenger RNA

>Gcaud3361.t1 ID=Gcaud3361.t1|Name=Gcaud3361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:14363..15412- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACGACTCGCATTTTGCTTCTGAGAGCAAGAAATGCGTTTTCAAA
CTTGGCAGCGGAGGAGCGACTGTTGCTAGCATCCAAGAAACAGACGTTGC
TGCTGTACATAAACTCGCCCTGTGTGATTCTAGGACGTACTCAAAACGCA
TTCAAAGAGGCAGATATATCATACGCAAAACAGGAACAAGTGTCTATCAT
GAGACGTCGATCAGGAGGAGGGACAGTGGTGCACGATGAAGGAAACGTGA
ATTTCTGCTGGATGACTTCGAGAGATGAGTACAGTCCTCACAAAGCTGCT
ACAATGATCGCGGAAATGCTCCAAAGCGAACTCAACATCAGCGCAACAGT
GAATGAACGCGCGGATATTCTGGTGGAAGGGATGAAGGTTTCTGGGGCGG
CATATCGCATTACTGGTAACCGAGCTTATCATCATGGCACTTTGCTGGTG
GACTCAGATCTTGTTCGATTATCAAGAGTACTTCGATCACCGTTACGTGA
TGAACTGCATGCGAGTGGTACGCAAAGTATTCGGTCAACAGTTACGAATA
TATCGATGCATAACAGCATCACAACGGAACAAATGATGCAGGCGGTGGCA
GCTCGCTTCGGGGGTAGCGCAAACGTGGAGGAAGTAGATCCGTATCAACT
GGAAGACTTCCGGAAGGAACGTGATGAACTAAGTAGTCATGCGTGGGTAT
ACGGACAAACGCCTCGCTTTCACTATGAAGCGCAGGTCGATTCTAACACG
CACCTTACCTTGTATGCTAGGAAAGGGGGCGTTGTGGAGAATGTTGTGGT
GAAGACGTCAGTTGACGGTGTTGAAGATGACCTGCGGCATGCGGTGGTGG
GATGCGCTTTTGATGGGGCGGACTTAGCGCATGGCATACGCACGCAGGTG
GAGAGCGGAGGCATTAAAGGAGCGTTTTTCATGAGGGTTGCAGACTTTGT
GGAAGAGCATATTCCGCAGCAGTTTTGGAGGAGCGAAAGAGATGAATTAC
ATTTTGACGGAGAGGGCTCGTATGCAGCTCCGTCCTCGTCCCGAACGTAG

protein sequence of Gcaud3361.t1

>Gcaud3361.t1 ID=Gcaud3361.t1|Name=Gcaud3361.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MNTTRILLLRARNAFSNLAAEERLLLASKKQTLLLYINSPCVILGRTQNA
FKEADISYAKQEQVSIMRRRSGGGTVVHDEGNVNFCWMTSRDEYSPHKAA
TMIAEMLQSELNISATVNERADILVEGMKVSGAAYRITGNRAYHHGTLLV
DSDLVRLSRVLRSPLRDELHASGTQSIRSTVTNISMHNSITTEQMMQAVA
ARFGGSANVEEVDPYQLEDFRKERDELSSHAWVYGQTPRFHYEAQVDSNT
HLTLYARKGGVVENVVVKTSVDGVEDDLRHAVVGCAFDGADLAHGIRTQV
ESGGIKGAFFMRVADFVEEHIPQQFWRSERDELHFDGEGSYAAPSSSRT*

mRNA from alignment at NODE_179_length_39915_cov_4.496535:14363..15412-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3361.t1 ID=Gcaud3361.t1|Name=Gcaud3361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:14363..15412- (Gracilaria caudata M_176_S67 male)
ATGAATACGACTCGCATTTTGCTTCTGAGAGCAAGAAATGCGTTTTCAAA
CTTGGCAGCGGAGGAGCGACTGTTGCTAGCATCCAAGAAACAGACGTTGC
TGCTGTACATAAACTCGCCCTGTGTGATTCTAGGACGTACTCAAAACGCA
TTCAAAGAGGCAGATATATCATACGCAAAACAGGAACAAGTGTCTATCAT
GAGACGTCGATCAGGAGGAGGGACAGTGGTGCACGATGAAGGAAACGTGA
ATTTCTGCTGGATGACTTCGAGAGATGAGTACAGTCCTCACAAAGCTGCT
ACAATGATCGCGGAAATGCTCCAAAGCGAACTCAACATCAGCGCAACAGT
GAATGAACGCGCGGATATTCTGGTGGAAGGGATGAAGGTTTCTGGGGCGG
CATATCGCATTACTGGTAACCGAGCTTATCATCATGGCACTTTGCTGGTG
GACTCAGATCTTGTTCGATTATCAAGAGTACTTCGATCACCGTTACGTGA
TGAACTGCATGCGAGTGGTACGCAAAGTATTCGGTCAACAGTTACGAATA
TATCGATGCATAACAGCATCACAACGGAACAAATGATGCAGGCGGTGGCA
GCTCGCTTCGGGGGTAGCGCAAACGTGGAGGAAGTAGATCCGTATCAACT
GGAAGACTTCCGGAAGGAACGTGATGAACTAAGTAGTCATGCGTGGGTAT
ACGGACAAACGCCTCGCTTTCACTATGAAGCGCAGGTCGATTCTAACACG
CACCTTACCTTGTATGCTAGGAAAGGGGGCGTTGTGGAGAATGTTGTGGT
GAAGACGTCAGTTGACGGTGTTGAAGATGACCTGCGGCATGCGGTGGTGG
GATGCGCTTTTGATGGGGCGGACTTAGCGCATGGCATACGCACGCAGGTG
GAGAGCGGAGGCATTAAAGGAGCGTTTTTCATGAGGGTTGCAGACTTTGT
GGAAGAGCATATTCCGCAGCAGTTTTGGAGGAGCGAAAGAGATGAATTAC
ATTTTGACGGAGAGGGCTCGTATGCAGCTCCGTCCTCGTCCCGAACGTAG

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:14363..15412-

>Gcaud3361.t1 ID=Gcaud3361.t1|Name=Gcaud3361.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1050bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:14363..15412- (Gracilaria caudata M_176_S67 male)
ATGAATACGACTCGCATTTTGCTTCTGAGAGCAAGAAATGCGTTTTCAAA
CTTGGCAGCGGAGGAGCGACTGTTGCTAGCATCCAAGAAACAGACGTTGC
TGCTGTACATAAACTCGCCCTGTGTGATTCTAGGACGTACTCAAAACGCA
TTCAAAGAGGCAGATATATCATACGCAAAACAGGAACAAGTGTCTATCAT
GAGACGTCGATCAGGAGGAGGGACAGTGGTGCACGATGAAGGAAACGTGA
ATTTCTGCTGGATGACTTCGAGAGATGAGTACAGTCCTCACAAAGCTGCT
ACAATGATCGCGGAAATGCTCCAAAGCGAACTCAACATCAGCGCAACAGT
GAATGAACGCGCGGATATTCTGGTGGAAGGGATGAAGGTTTCTGGGGCGG
CATATCGCATTACTGGTAACCGAGCTTATCATCATGGCACTTTGCTGGTG
GACTCAGATCTTGTTCGATTATCAAGAGTACTTCGATCACCGTTACGTGA
TGAACTGCATGCGAGTGGTACGCAAAGTATTCGGTCAACAGTTACGAATA
TATCGATGCATAACAGCATCACAACGGAACAAATGATGCAGGCGGTGGCA
GCTCGCTTCGGGGGTAGCGCAAACGTGGAGGAAGTAGATCCGTATCAACT
GGAAGACTTCCGGAAGGAACGTGATGAACTAAGTAGTCATGCGTGGGTAT
ACGGACAAACGCCTCGCTTTCACTATGAAGCGCAGGTCGATTCTAACACG
CACCTTACCTTGTATGCTAGGAAAGGGGGCGTTGTGGAGAATGTTGTGGT
GAAGACGTCAGTTGACGGTGTTGAAGATGACCTGCGGCATGCGGTGGTGG
GATGCGCTTTTGATGGGGCGGACTTAGCGCATGGCATACGCACGCAGGTG
GAGAGCGGAGGCATTAAAGGAGCGTTTTTCATGAGGGTTGCAGACTTTGT
GGAAGAGCATATTCCGCAGCAGTTTTGGAGGAGCGAAAGAGATGAATTAC
ATTTTGACGGAGAGGGCTCGTATGCAGCTCCGTCCTCGTCCCGAACGTAG