Gcaud2156.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2156.t1
Unique NameGcaud2156.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length287
Homology
BLAST of Gcaud2156.t1 vs. uniprot
Match: A0A2V3IUV5_9FLOR (Mitochondrial outer membrane protein porin 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUV5_9FLOR)

HSP 1 Score: 432 bits (1112), Expect = 4.870e-151
Identity = 213/285 (74.74%), Postives = 243/285 (85.26%), Query Frame = 0
Query:    2 AAPPPKRQMKQYADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSGEQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRKGTLSTLVGKELRTATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSKFDPSKLDNAKVGMSLAIE 286
            +APPPK QMKQY+DIGKIAKKLLTDDYIF+NKLK+TS TPDG+SYT++G    K EQI AEISGKCK+KG  FT KAFT GKLPTLE KY ++DAQGRK TL+ L GKELRT TAE +GGPVG+K+ G+A+S D+Y SLAVALTSDKYDGF+IAGAE  YN+  ++LG  +Y LS+FDGKESEVSLH  + M  AM+SYSHHVRHGFSAAAQI H F  K TQIA+GAAYRLDGAT +KGK+DMDGFVALTYLQDIRPN KLIMSSKFDPSKLDNAKVG+SL +E
Sbjct:    4 SAPPPKPQMKQYSDIGKIAKKLLTDDYIFTNKLKVTSMTPDGISYTITGVHNSKIEQIDAEISGKCKVKGVDFTGKAFTNGKLPTLEVKYNTTDAQGRKATLTGLFGKELRTGTAELLGGPVGVKIAGDAVSSDVYGSLAVALTSDKYDGFIIAGAESSYNINAKELGKTSYGLSLFDGKESEVSLHATNRMQKAMLSYSHHVRHGFSAAAQIQHDFPEKRTQIALGAAYRLDGATAVKGKVDMDGFVALTYLQDIRPNTKLIMSSKFDPSKLDNAKVGVSLTVE 288          
BLAST of Gcaud2156.t1 vs. uniprot
Match: R7QMN5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMN5_CHOCR)

HSP 1 Score: 301 bits (770), Expect = 3.800e-98
Identity = 149/282 (52.84%), Postives = 203/282 (71.99%), Query Frame = 0
Query:    5 PPKRQMKQYADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSGEQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRKGTLSTLVGKELRTATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSKFDPSKLDNAKVGMSLAIE 286
            P  ++MK Y+DIGK+AKKLLTDDYIF+NK+K+ S T DG SYTV+G Q PK + IAAE+S K K +G T T K  TG K P +EAKYE+ D+ GR  T++    + L  +  EF+ GP+GIK+  + L+  +  S AVA++S +Y GF +AGAE +YN+  +++   NYALS FDG+ESE +LHV+D   S MISYSHHVR GFS  AQ+ +   + +T + +G+AYRLDGATT+KGKLD  G ++L+Y+Q++RPN  LIMSSKF+ +  D+AK G SLA+E
Sbjct:   71 PSDQKMKMYSDIGKVAKKLLTDDYIFTNKIKVASKTQDGCSYTVTGVQNPKDDAIAAEVSTKLKARGATVTGKLQTGAKDPIIEAKYETKDSDGRNYTVAGDFSRNLAKSHVEFISGPLGIKIGADVLASHITGSAAVAISSSQYSGFAVAGAETQYNIADKEVSKLNYALSFFDGRESECTLHVLDQAKSGMISYSHHVRPGFSVGAQVLYVRESAATSLCVGSAYRLDGATTVKGKLDSAGTLSLSYIQNVRPNTTLIMSSKFNTTNFDSAKFGFSLALE 352          
BLAST of Gcaud2156.t1 vs. uniprot
Match: R7QSJ6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ6_CHOCR)

HSP 1 Score: 147 bits (370), Expect = 5.400e-39
Identity = 94/283 (33.22%), Postives = 160/283 (56.54%), Query Frame = 0
Query:   10 MKQYADIGKIAKKLLTDDYIFSNK-LKLTSNTPDGVSYTVSGEQYPK-SEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRKGT-LSTLVGKELRTATAEFVGGPVGIKMVGNAL-SHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSKFDPSKLDNA--KVGMSLAIE 286
            +K Y D+GK AKKLL DDYI+ +K +++ + T +G++YT   +Q     + ++ ++S K  + GTT T + FT G+L + + + + +  +G K T L  L  K+   AT E+V   + +    N L S  +  + AV L        V AG +G++N+  +QL   +  L+  +GKE E + +++++   A  +YSH V   FS AA+  ++ S  + ++ MG  Y +D  TT+K K+D  G V+L+Y+Q+IR +  L + S+FD   LD    K G++L +E
Sbjct:    2 VKLYKDLGKTAKKLLNDDYIYGDKKVEIKTKTTNGITYTTKAKQSQDVKDGLSGDLSCKYNVSGTTMTTEIFTSGRL-SHKVELDKTGVKGLKFTALGGLGQKQSLLATTEYVHPHMSVVTAVNCLGSQSISTAAAVGLHG------VTAGVKGDFNIEDKQLKNVDGVLNYSNGKEHEATCYLLNNRSMAKFAYSHLVSDDFSVAAEFEYNISADTKKLTMGTKYEVDPETTVKMKIDSAGAVSLSYIQEIRKSTTLTLCSQFDARHLDKPSHKFGLALVME 277          
BLAST of Gcaud2156.t1 vs. uniprot
Match: A0A1X6P950_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P950_PORUM)

HSP 1 Score: 134 bits (337), Expect = 3.960e-34
Identity = 90/278 (32.37%), Postives = 146/278 (52.52%), Query Frame = 0
Query:   13 YADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSGEQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRKGTLSTLVGKELRT--ATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSK--FDPSKLDNAKVGMSLAIE 286
            YAD+GK+AKKLL DDYI   KL++ + T  GV+YT +G Q  K+E I  +++ K K+ G + T K FT GK  T E   +     G    L   +  +  +  ATAEF+   + + +  +  +  +  + AV      + G+ + GA   +    + L  AN  L+  DG ESEV+  +++   +A++SYSH VR GF+ AAQ ++   +K   +  G    L G    K KLD  G ++L ++ ++RP   +++SS+           K+G+SL +E
Sbjct:    5 YADLGKVAKKLLNDDYIADRKLQVKTTTASGVTYTATGVQSAKNESIDGDLTIKAKVSGNSVTTKLFTSGKA-TAETTLDRLGVDGLALKLKAALAHDAVSGLATAEFINKNMSLTVQSSLTASPVVDASAVIA----HAGWRL-GATTSFATEAKGLTGANVTLAYADGGESEVTATLLNQATAAVVSYSHSVRPGFAVAAQFAYDQPSKECIVTAGTKTALPGGGWAKIKLDSLGSMSLAFIHEVRPGTTMVLSSRVGLKDGPKGPPKLGLSLVVE 276          
BLAST of Gcaud2156.t1 vs. uniprot
Match: A0A1X6NZ78_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZ78_PORUM)

HSP 1 Score: 109 bits (273), Expect = 8.810e-25
Identity = 82/278 (29.50%), Postives = 130/278 (46.76%), Query Frame = 0
Query:   13 YADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSGEQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRKGTLSTLVGKELRTATAEFVGGPV--GIKMVGNALSHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSKFDPSK--LDNAKVGMSLAIE 286
            Y D+GK AKKLLTD+Y    KL   + T   V+YT +G Q   +  I+ +++ K  + G   T K FT GKL T E   +    +G    LS  V   L  + A   G         V   L  D+ ++  +  T     G V  G E  Y+  K +   A+ ++S  D  ESE++L + +    A++SY H    GF+ AAQ ++   +  + +  G    L    + K K+D  G +++     + P+  L++S+  D       ++KVG+SL IE
Sbjct:    4 YGDLGKAAKKLLTDNYTSDQKLTFKTTTAQKVTYTATGVQDADTNLISGDVAMKMGVAGHAVTTKLFTSGKL-TSEVTLDRLGVEG----LSVKVLGALSDSGAASAGASAEWNTPSVSATLLSDLSSAPTLRATVVAGHGGVYVGGETAYDTAKSETTMADLSISYADRFESEINLQLQNKGTRALLSYGHEAAPGFAVAAQYAYDLKSHESVLTAGTNTLLADGGSFKVKVDSLGLLSVALKHTLHPSTTLVLSTSVDLKSEVKQSSKVGISLCIE 276          
BLAST of Gcaud2156.t1 vs. uniprot
Match: A0A0W4ZS75_PNEJ7 (Uncharacterized protein n=2 Tax=Pneumocystis TaxID=4753 RepID=A0A0W4ZS75_PNEJ7)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-6
Identity = 69/288 (23.96%), Postives = 119/288 (41.32%), Query Frame = 0
Query:   13 YADIGKIAKKLLTDDY-IFSNKLKLTSNTPDGVSYTVSGEQYPKSEQIAAEISGKC--KIKGTTFTAKAFTGGKLPTLEAKYESSD--AQGRKGTLSTLVGKELRTATAEFVGG----PVGIKMVGNALSHDMYASLAVALTSDKYDGFVIAGAEGEYNVGKRQLGYANYALSV-FDGKESEVSLHVVDHMHSAMISYSHHVRHGFSAAAQISHHFSTKSTQIAM--GAAYRLDGATTIKGKLDMDGFVALTYLQDIRPNAKLIMSSKFDPSKLDNA--KVGMSLAIE 286
            Y D  K    + + D+ I    L + +  P+GV ++V G Q  K   I  ++ GK   K+ G +F     T   L T   K E  D  A+G    ++T +     T  A+   G     V ++   +      +    V       DGF +AG    Y++    +   +YA S+     +  +++    ++     SY H V      A +++      S+ IA+  G  + LD    +K K++ DG   L+Y Q +    K+ +    D  +L  A  K+GMS+ I+
Sbjct:    7 YDDFAKQQNDIFSKDFPIDGASLDIRTKAPNGVEFSVKGNQTSKIGSILGQLEGKYSDKLSGFSFLQNWTTNNALAT---KIELQDHLAKGLSADINTTLFLSSNTKNAKLGLGYKQPTVNVRTTIDLFKGPTFLGNIVV----GKDGF-LAGGNISYDILNGSI--TDYAASIGCIQPQYSIAVQATQNLSVFSASYYHRVNSLTEVAGRMTWDTKKPSSMIALEVGTKHFLDKDVFVKAKINNDGIAGLSYTQTLYSGIKVGLGLSLDTQRLSEAAHKIGMSITIQ 284          
The following BLAST results are available for this feature:
BLAST of Gcaud2156.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IUV5_9FLOR4.870e-15174.74Mitochondrial outer membrane protein porin 3 n=1 T... [more]
R7QMN5_CHOCR3.800e-9852.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QSJ6_CHOCR5.400e-3933.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P950_PORUM3.960e-3432.37Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NZ78_PORUM8.810e-2529.50Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0W4ZS75_PNEJ73.480e-623.96Uncharacterized protein n=2 Tax=Pneumocystis TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001925Porin, eukaryotic typePRINTSPR00185EUKARYTPORINcoord: 253..270
score: 38.89
coord: 11..26
score: 37.98
coord: 71..86
score: 45.67
IPR001925Porin, eukaryotic typePANTHERPTHR11743VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNELcoord: 12..285
IPR001925Porin, eukaryotic typeCDDcd07306Porin3_VDACcoord: 10..286
e-value: 3.69609E-44
score: 149.281
IPR027246Eukaryotic porin/Tom40PFAMPF01459Porin_3coord: 12..280
e-value: 5.8E-28
score: 98.1
IPR023614Porin domain superfamilyGENE3D2.40.160.10Porincoord: 6..286
e-value: 2.0E-49
score: 170.3
NoneNo IPR availablePANTHERPTHR11743:SF23GH26960P-RELATEDcoord: 12..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1718_length_8829_cov_4.218585contigNODE_1718_length_8829_cov_4.218585:1874..2821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1Gcaud2156.t1Gracilaria caudata M_176_S67 malemRNANODE_1718_length_8829_cov_4.218585 1874..2821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MAAPPPKRQMKQYADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSG
EQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRK
GTLSTLVGKELRTATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYD
GFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISY
SHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVA
LTYLQDIRPNAKLIMSSKFDPSKLDNAKVGMSLAIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001925Porin_Euk
IPR027246Porin_Euk/Tom40
IPR023614Porin_dom_sf