Gcaud2156.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2156.t1
Unique NameGcaud2156.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1718_length_8829_cov_4.218585contigNODE_1718_length_8829_cov_4.218585:1874..2821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706832.1
Preferred nameVDAC2
PFAMsPorin_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00588
KEGG koko:K02552,ko:K05862,ko:K13947,ko:K15040,ko:K15041
KEGG TC1.B.8.1,2.A.69.1
KEGG ReactionR01717
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,ko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05161,ko05164,ko05166,ko05203,map00130,map01053,map01100,map01110,map01130,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05161,map05164,map05166,map05203
KEGG ModuleM00116
GOsGO:0000003,GO:0001662,GO:0001669,GO:0002209,GO:0003006,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005757,GO:0005759,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006820,GO:0006839,GO:0006851,GO:0006863,GO:0006914,GO:0006915,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007338,GO:0007339,GO:0007349,GO:0007602,GO:0007610,GO:0007611,GO:0007612,GO:0008021,GO:0008037,GO:0008150,GO:0008152,GO:0008219,GO:0008308,GO:0008324,GO:0008509,GO:0009056,GO:0009060,GO:0009266,GO:0009295,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009566,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009888,GO:0009892,GO:0009894,GO:0009941,GO:0009966,GO:0009968,GO:0009987,GO:0009988,GO:0010029,GO:0010033,GO:0010506,GO:0010646,GO:0010648,GO:0010821,GO:0010941,GO:0012501,GO:0012505,GO:0015075,GO:0015085,GO:0015103,GO:0015267,GO:0015288,GO:0015318,GO:0015698,GO:0015851,GO:0015853,GO:0015931,GO:0015980,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0019222,GO:0019725,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0022803,GO:0022829,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030133,GO:0030141,GO:0030154,GO:0030312,GO:0030382,GO:0030855,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031324,GO:0031329,GO:0031333,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032592,GO:0032991,GO:0033043,GO:0033555,GO:0034220,GO:0035036,GO:0042170,GO:0042221,GO:0042592,GO:0042596,GO:0042645,GO:0042742,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044237,GO:0044248,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044456,GO:0044464,GO:0044703,GO:0044877,GO:0045121,GO:0045202,GO:0045333,GO:0045454,GO:0046873,GO:0046930,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051027,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0055114,GO:0060429,GO:0060548,GO:0061919,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070588,GO:0070838,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0097223,GO:0097458,GO:0097708,GO:0098542,GO:0098573,GO:0098588,GO:0098589,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098793,GO:0098796,GO:0098798,GO:0098805,GO:0098857,GO:0098916,GO:0099503,GO:0099536,GO:0099537,GO:1900140,GO:1902531,GO:1902532,GO:1903146,GO:1990542,GO:2000026,GO:2000377,GO:2000378,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue6.79e-32
EggNOG OGsKOG3126@1|root,KOG3126@2759|Eukaryota
EC5.4.4.2
Descriptionporin activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2156Gcaud2156Gracilaria caudata M_176_S67 malegeneNODE_1718_length_8829_cov_4.218585 1874..2821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1Gcaud2156.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1718_length_8829_cov_4.218585 1874..2821 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1.start1Gcaud2156.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1718_length_8829_cov_4.218585 1874..1876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1.CDS1Gcaud2156.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1718_length_8829_cov_4.218585 1874..1937 +
Gcaud2156.t1.CDS2Gcaud2156.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1718_length_8829_cov_4.218585 2025..2821 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1.exon1Gcaud2156.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1718_length_8829_cov_4.218585 1874..1937 +
Gcaud2156.t1.exon2Gcaud2156.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1718_length_8829_cov_4.218585 2025..2821 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1.intron1Gcaud2156.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1718_length_8829_cov_4.218585 1938..2024 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2156.t1.stop1Gcaud2156.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1718_length_8829_cov_4.218585 2819..2821 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MAAPPPKRQMKQYADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSG
EQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRK
GTLSTLVGKELRTATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYD
GFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISY
SHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVA
LTYLQDIRPNAKLIMSSKFDPSKLDNAKVGMSLAIE*
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spliced messenger RNA

>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:1874..2821+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCCCGCCGCCGAAACGCCAGATGAAGCAGTACGCCGACATTGG
CAAGATCGCCAAGAAGCTGCTCACCGATGACTACATCTTCTCCAACAAGC
TCAAACTCACGTCCAACACGCCGGACGGCGTGTCGTACACGGTGAGTGGC
GAGCAATATCCGAAGAGCGAGCAGATTGCGGCGGAGATTAGCGGCAAGTG
CAAGATCAAGGGCACCACCTTCACCGCGAAGGCGTTCACGGGCGGAAAGC
TTCCCACGCTGGAGGCCAAGTATGAATCGAGCGACGCGCAGGGCAGAAAG
GGTACCTTGAGCACGTTGGTTGGCAAGGAACTGCGCACGGCCACGGCCGA
GTTTGTGGGCGGGCCGGTGGGCATCAAGATGGTGGGTAATGCTCTGTCGC
ACGATATGTATGCTTCGTTGGCGGTTGCGCTCACGTCGGACAAGTACGAT
GGCTTTGTTATCGCCGGCGCGGAGGGTGAGTATAACGTGGGCAAACGGCA
GTTGGGGTATGCTAATTACGCGCTTAGCGTGTTTGATGGCAAGGAAAGTG
AGGTTTCGCTGCATGTGGTGGACCACATGCACAGCGCTATGATCAGTTAT
TCGCATCATGTGCGGCATGGCTTCTCGGCGGCTGCTCAGATTTCGCACCA
CTTTTCTACGAAGAGCACGCAGATTGCTATGGGCGCGGCGTATCGCCTGG
ATGGTGCCACCACGATTAAGGGAAAGCTTGACATGGATGGCTTTGTGGCG
CTCACTTACTTGCAGGATATTCGACCGAATGCAAAGTTGATCATGTCGTC
CAAGTTTGACCCCAGCAAGTTGGATAACGCTAAGGTTGGTATGTCGCTGG
CTATCGAGTAG
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protein sequence of Gcaud2156.t1

>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MAAPPPKRQMKQYADIGKIAKKLLTDDYIFSNKLKLTSNTPDGVSYTVSG
EQYPKSEQIAAEISGKCKIKGTTFTAKAFTGGKLPTLEAKYESSDAQGRK
GTLSTLVGKELRTATAEFVGGPVGIKMVGNALSHDMYASLAVALTSDKYD
GFVIAGAEGEYNVGKRQLGYANYALSVFDGKESEVSLHVVDHMHSAMISY
SHHVRHGFSAAAQISHHFSTKSTQIAMGAAYRLDGATTIKGKLDMDGFVA
LTYLQDIRPNAKLIMSSKFDPSKLDNAKVGMSLAIE*
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mRNA from alignment at NODE_1718_length_8829_cov_4.218585:1874..2821+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:1874..2821+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCCCGCCGCCGAAACGCCAGATGAAGCAGTACGCCGACATTGG
CAAGATCGCCAAGAGTAAGTTGTTTTGCGCGCGCGCATGCTGAGCAAACG
TGTTGTTAACCGCTGCCCGCCGTTTGATGCGTGATGTGTTCGCGCACGTA
GAGCTGCTCACCGATGACTACATCTTCTCCAACAAGCTCAAACTCACGTC
CAACACGCCGGACGGCGTGTCGTACACGGTGAGTGGCGAGCAATATCCGA
AGAGCGAGCAGATTGCGGCGGAGATTAGCGGCAAGTGCAAGATCAAGGGC
ACCACCTTCACCGCGAAGGCGTTCACGGGCGGAAAGCTTCCCACGCTGGA
GGCCAAGTATGAATCGAGCGACGCGCAGGGCAGAAAGGGTACCTTGAGCA
CGTTGGTTGGCAAGGAACTGCGCACGGCCACGGCCGAGTTTGTGGGCGGG
CCGGTGGGCATCAAGATGGTGGGTAATGCTCTGTCGCACGATATGTATGC
TTCGTTGGCGGTTGCGCTCACGTCGGACAAGTACGATGGCTTTGTTATCG
CCGGCGCGGAGGGTGAGTATAACGTGGGCAAACGGCAGTTGGGGTATGCT
AATTACGCGCTTAGCGTGTTTGATGGCAAGGAAAGTGAGGTTTCGCTGCA
TGTGGTGGACCACATGCACAGCGCTATGATCAGTTATTCGCATCATGTGC
GGCATGGCTTCTCGGCGGCTGCTCAGATTTCGCACCACTTTTCTACGAAG
AGCACGCAGATTGCTATGGGCGCGGCGTATCGCCTGGATGGTGCCACCAC
GATTAAGGGAAAGCTTGACATGGATGGCTTTGTGGCGCTCACTTACTTGC
AGGATATTCGACCGAATGCAAAGTTGATCATGTCGTCCAAGTTTGACCCC
AGCAAGTTGGATAACGCTAAGGTTGGTATGTCGCTGGCTATCGAGTAG
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Coding sequence (CDS) from alignment at NODE_1718_length_8829_cov_4.218585:1874..2821+

>Gcaud2156.t1 ID=Gcaud2156.t1|Name=Gcaud2156.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:1874..2821+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCCCGCCGCCGAAACGCCAGATGAAGCAGTACGCCGACATTGG
CAAGATCGCCAAGAAGCTGCTCACCGATGACTACATCTTCTCCAACAAGC
TCAAACTCACGTCCAACACGCCGGACGGCGTGTCGTACACGGTGAGTGGC
GAGCAATATCCGAAGAGCGAGCAGATTGCGGCGGAGATTAGCGGCAAGTG
CAAGATCAAGGGCACCACCTTCACCGCGAAGGCGTTCACGGGCGGAAAGC
TTCCCACGCTGGAGGCCAAGTATGAATCGAGCGACGCGCAGGGCAGAAAG
GGTACCTTGAGCACGTTGGTTGGCAAGGAACTGCGCACGGCCACGGCCGA
GTTTGTGGGCGGGCCGGTGGGCATCAAGATGGTGGGTAATGCTCTGTCGC
ACGATATGTATGCTTCGTTGGCGGTTGCGCTCACGTCGGACAAGTACGAT
GGCTTTGTTATCGCCGGCGCGGAGGGTGAGTATAACGTGGGCAAACGGCA
GTTGGGGTATGCTAATTACGCGCTTAGCGTGTTTGATGGCAAGGAAAGTG
AGGTTTCGCTGCATGTGGTGGACCACATGCACAGCGCTATGATCAGTTAT
TCGCATCATGTGCGGCATGGCTTCTCGGCGGCTGCTCAGATTTCGCACCA
CTTTTCTACGAAGAGCACGCAGATTGCTATGGGCGCGGCGTATCGCCTGG
ATGGTGCCACCACGATTAAGGGAAAGCTTGACATGGATGGCTTTGTGGCG
CTCACTTACTTGCAGGATATTCGACCGAATGCAAAGTTGATCATGTCGTC
CAAGTTTGACCCCAGCAAGTTGGATAACGCTAAGGTTGGTATGTCGCTGG
CTATCGAGTAG
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