Gcaud7971.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7971.t1
Unique Name	Gcaud7971.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_168_length_41232_cov_4.499891	contig	NODE_168_length_41232_cov_4.499891:3817..4848 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_13321T0
PFAMs	LOR
Max annot lvl	33154\|Opisthokonta
Evalue	2.33e-18
EggNOG OGs	28N8X@1\|root,2QUU9@2759\|Eukaryota,3A41T@33154\|Opisthokonta
Description	LURP-one-related
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7971	Gcaud7971	Gracilaria caudata M_176_S67 male	gene	NODE_168_length_41232_cov_4.499891 3817..4848 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7971.t1.stop1	Gcaud7971.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_168_length_41232_cov_4.499891 3817..3819 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7971.t1.CDS1	Gcaud7971.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_168_length_41232_cov_4.499891 3817..4848 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7971.t1.exon1	Gcaud7971.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_168_length_41232_cov_4.499891 3817..4848 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7971.t1.start1	Gcaud7971.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_168_length_41232_cov_4.499891 4846..4848 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7971.t1	Gcaud7971.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_168_length_41232_cov_4.499891 3817..4848 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_168_length_41232_cov_4.499891:3817..4848-
coding sequence from alignment at NODE_168_length_41232_cov_4.499891:3817..4848-

mRNA sequence

>Gcaud7971.t1 ID=Gcaud7971.t1|Name=Gcaud7971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MPSLSCARASPRAVVDKYAGPALPGSPPIVKAAPVTHFTTMSSLAPGWTA
HQAPDGRWYYANAATGQTQWHPPVAHGYGQAPPPPPPPPGGYSSSSAYPS
NYPSSSHQSPAPMGYPGSSSSHQQHGHGGGHHRPTQKPARIHNMPSAAAR
FVFNHSVEFKIKENLFSFSGDSFSIKRTDTGEAIFKVKGNAFSFKDSKSL
YDMHGHPIYKMVESIISLRGRMQISDAATKRPIITLRKKGFIPGFGNSTI
AAWRGATDQGPPYMEVKGDIFRKDFTIKEVATGRIIATARRRSFTLSNIL
LEKDSYVLRVEPQQDTALIVFFVVAIDEQYRDDGERRGYSSLF*

spliced messenger RNA

>Gcaud7971.t1 ID=Gcaud7971.t1|Name=Gcaud7971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:3817..4848- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGCTCTCGTGCGCCCGCGCCAGTCCGCGCGCCGTTGTAGATAA
ATACGCTGGTCCAGCGCTGCCAGGTTCTCCTCCGATTGTCAAGGCCGCTC
CAGTCACACACTTCACCACCATGTCCTCGCTAGCTCCCGGCTGGACCGCG
CACCAGGCGCCCGACGGGCGCTGGTACTACGCCAACGCCGCAACCGGCCA
AACACAGTGGCATCCGCCCGTCGCACACGGTTACGGTCAAGCGCCGCCGC
CGCCGCCGCCGCCGCCCGGCGGCTACTCTTCCTCCTCCGCTTACCCTTCA
AACTACCCGTCCTCGTCGCACCAGTCGCCCGCGCCTATGGGCTACCCTGG
CTCTTCATCTTCCCACCAGCAACACGGCCATGGTGGTGGTCATCATCGGC
CCACCCAAAAGCCAGCGCGCATTCACAACATGCCGTCGGCGGCCGCACGC
TTCGTTTTCAACCACAGCGTTGAATTTAAGATCAAGGAGAACTTGTTTTC
GTTCTCAGGCGACTCCTTCTCCATAAAACGCACTGACACCGGTGAGGCCA
TCTTCAAGGTAAAGGGTAATGCGTTTTCTTTCAAGGATTCCAAATCGCTG
TACGACATGCACGGCCACCCCATCTACAAGATGGTCGAGAGTATCATCAG
TCTGCGCGGACGCATGCAGATCTCGGATGCCGCCACTAAACGTCCTATCA
TCACTCTCCGCAAAAAAGGTTTCATCCCCGGCTTCGGGAACAGTACCATC
GCCGCGTGGCGCGGCGCCACCGATCAAGGACCGCCGTACATGGAAGTGAA
GGGAGATATCTTCCGCAAAGACTTCACTATCAAGGAGGTCGCTACAGGTC
GCATTATTGCGACAGCTCGTCGAAGAAGTTTCACACTTTCCAACATCCTA
CTCGAGAAGGACTCGTACGTGCTAAGAGTGGAACCCCAACAAGATACGGC
GCTGATTGTGTTTTTCGTCGTCGCCATTGACGAGCAATATCGTGATGATG
GTGAACGAAGAGGATATAGCTCGCTGTTTTAA

protein sequence of Gcaud7971.t1

>Gcaud7971.t1 ID=Gcaud7971.t1|Name=Gcaud7971.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MPSLSCARASPRAVVDKYAGPALPGSPPIVKAAPVTHFTTMSSLAPGWTA
HQAPDGRWYYANAATGQTQWHPPVAHGYGQAPPPPPPPPGGYSSSSAYPS
NYPSSSHQSPAPMGYPGSSSSHQQHGHGGGHHRPTQKPARIHNMPSAAAR
FVFNHSVEFKIKENLFSFSGDSFSIKRTDTGEAIFKVKGNAFSFKDSKSL
YDMHGHPIYKMVESIISLRGRMQISDAATKRPIITLRKKGFIPGFGNSTI
AAWRGATDQGPPYMEVKGDIFRKDFTIKEVATGRIIATARRRSFTLSNIL
LEKDSYVLRVEPQQDTALIVFFVVAIDEQYRDDGERRGYSSLF*

mRNA from alignment at NODE_168_length_41232_cov_4.499891:3817..4848-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7971.t1 ID=Gcaud7971.t1|Name=Gcaud7971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:3817..4848- (Gracilaria caudata M_176_S67 male)
ATGCCGTCGCTCTCGTGCGCCCGCGCCAGTCCGCGCGCCGTTGTAGATAA
ATACGCTGGTCCAGCGCTGCCAGGTTCTCCTCCGATTGTCAAGGCCGCTC
CAGTCACACACTTCACCACCATGTCCTCGCTAGCTCCCGGCTGGACCGCG
CACCAGGCGCCCGACGGGCGCTGGTACTACGCCAACGCCGCAACCGGCCA
AACACAGTGGCATCCGCCCGTCGCACACGGTTACGGTCAAGCGCCGCCGC
CGCCGCCGCCGCCGCCCGGCGGCTACTCTTCCTCCTCCGCTTACCCTTCA
AACTACCCGTCCTCGTCGCACCAGTCGCCCGCGCCTATGGGCTACCCTGG
CTCTTCATCTTCCCACCAGCAACACGGCCATGGTGGTGGTCATCATCGGC
CCACCCAAAAGCCAGCGCGCATTCACAACATGCCGTCGGCGGCCGCACGC
TTCGTTTTCAACCACAGCGTTGAATTTAAGATCAAGGAGAACTTGTTTTC
GTTCTCAGGCGACTCCTTCTCCATAAAACGCACTGACACCGGTGAGGCCA
TCTTCAAGGTAAAGGGTAATGCGTTTTCTTTCAAGGATTCCAAATCGCTG
TACGACATGCACGGCCACCCCATCTACAAGATGGTCGAGAGTATCATCAG
TCTGCGCGGACGCATGCAGATCTCGGATGCCGCCACTAAACGTCCTATCA
TCACTCTCCGCAAAAAAGGTTTCATCCCCGGCTTCGGGAACAGTACCATC
GCCGCGTGGCGCGGCGCCACCGATCAAGGACCGCCGTACATGGAAGTGAA
GGGAGATATCTTCCGCAAAGACTTCACTATCAAGGAGGTCGCTACAGGTC
GCATTATTGCGACAGCTCGTCGAAGAAGTTTCACACTTTCCAACATCCTA
CTCGAGAAGGACTCGTACGTGCTAAGAGTGGAACCCCAACAAGATACGGC
GCTGATTGTGTTTTTCGTCGTCGCCATTGACGAGCAATATCGTGATGATG
GTGAACGAAGAGGATATAGCTCGCTGTTTTAA

Coding sequence (CDS) from alignment at NODE_168_length_41232_cov_4.499891:3817..4848-

>Gcaud7971.t1 ID=Gcaud7971.t1|Name=Gcaud7971.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:3817..4848- (Gracilaria caudata M_176_S67 male)
ATGCCGTCGCTCTCGTGCGCCCGCGCCAGTCCGCGCGCCGTTGTAGATAA
ATACGCTGGTCCAGCGCTGCCAGGTTCTCCTCCGATTGTCAAGGCCGCTC
CAGTCACACACTTCACCACCATGTCCTCGCTAGCTCCCGGCTGGACCGCG
CACCAGGCGCCCGACGGGCGCTGGTACTACGCCAACGCCGCAACCGGCCA
AACACAGTGGCATCCGCCCGTCGCACACGGTTACGGTCAAGCGCCGCCGC
CGCCGCCGCCGCCGCCCGGCGGCTACTCTTCCTCCTCCGCTTACCCTTCA
AACTACCCGTCCTCGTCGCACCAGTCGCCCGCGCCTATGGGCTACCCTGG
CTCTTCATCTTCCCACCAGCAACACGGCCATGGTGGTGGTCATCATCGGC
CCACCCAAAAGCCAGCGCGCATTCACAACATGCCGTCGGCGGCCGCACGC
TTCGTTTTCAACCACAGCGTTGAATTTAAGATCAAGGAGAACTTGTTTTC
GTTCTCAGGCGACTCCTTCTCCATAAAACGCACTGACACCGGTGAGGCCA
TCTTCAAGGTAAAGGGTAATGCGTTTTCTTTCAAGGATTCCAAATCGCTG
TACGACATGCACGGCCACCCCATCTACAAGATGGTCGAGAGTATCATCAG
TCTGCGCGGACGCATGCAGATCTCGGATGCCGCCACTAAACGTCCTATCA
TCACTCTCCGCAAAAAAGGTTTCATCCCCGGCTTCGGGAACAGTACCATC
GCCGCGTGGCGCGGCGCCACCGATCAAGGACCGCCGTACATGGAAGTGAA
GGGAGATATCTTCCGCAAAGACTTCACTATCAAGGAGGTCGCTACAGGTC
GCATTATTGCGACAGCTCGTCGAAGAAGTTTCACACTTTCCAACATCCTA
CTCGAGAAGGACTCGTACGTGCTAAGAGTGGAACCCCAACAAGATACGGC
GCTGATTGTGTTTTTCGTCGTCGCCATTGACGAGCAATATCGTGATGATG
GTGAACGAAGAGGATATAGCTCGCTGTTTTAA