Gcaud8293.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8293.t1
Unique Name	Gcaud8293.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1668_length_9166_cov_4.693333	contig	NODE_1668_length_9166_cov_4.693333:7223..9013 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002595788.1
PFAMs	DUF3504
Max annot lvl	33208\|Metazoa
Evalue	6.02e-07
EggNOG OGs	2CY9D@1\|root,2S2XV@2759\|Eukaryota,3A4FC@33154\|Opisthokonta,3BRU0@33208\|Metazoa,3D9Y7@33213\|Bilateria,48K37@7711\|Chordata
Description	Domain of unknown function (DUF3504)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8293	Gcaud8293	Gracilaria caudata M_176_S67 male	gene	NODE_1668_length_9166_cov_4.693333 7223..9013 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1.stop1	Gcaud8293.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1668_length_9166_cov_4.693333 7223..7225 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1.CDS1	Gcaud8293.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1668_length_9166_cov_4.693333 7223..9013 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1.exon1	Gcaud8293.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1668_length_9166_cov_4.693333 7223..9013 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1.start1	Gcaud8293.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1668_length_9166_cov_4.693333 9011..9013 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1	Gcaud8293.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1668_length_9166_cov_4.693333 7223..9013 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013-
coding sequence from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013-

mRNA sequence

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp
MALSPSLSQTPQLPISIELVPETPSPLPEEVLPATPTFQFDENEIKTQNQ
SASKSELRTAPVGATEIEKGASEAKESTELTSVEHAATSLQQEEANIPDD
ELSREAKNLLGRRIPVNTDRSTRTALSIFSVFYAKHQKLLYGADVAALSN
IKTPLPTKQRITENAISLTRQHLFRDRRGLPLSNGYDKWEDWQLHSINNA
LIEFVAHYRQARSGEELAPGTLKVYVAGIQRAFREDYNLDLGLLRGHIFS
DKQIGLYCALDNKVKERQAAGAVRQSHNNLSLEDLKRLYSSEQLSKNTPK
GFMVRILVDLLLITAFRKSELWSLRMKDVTRAKQNGMDALRIVGQIGSRD
GSSKTQRGGLHMVNVRPKEVFVFDMDVLDDTVNIYNDLCHYLDIVAPTRE
AEDRFLAAIDYRASTRAKFFKKGNLGVNSIYKYVTDACNEVGIRGEGVFD
HVTTHSFRATVVSQLKANGFDDSSVALRTGNRDMRSLKAYHNLRGNMGVQ
QQAAIFGSSVDTPSSVGNDGGSVHRAEVSKACVNRPSVRNDNTVAVEVLE
DCDNRNERSAKRQRTNDVFTAIGNMSGQITVNINYYHPRENEEKKE*

spliced messenger RNA

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTGTCTCCCTCACTCTCGCAAACACCGCAGTTGCCAATCTCCAT
CGAACTTGTCCCAGAGACACCCTCCCCACTACCTGAAGAAGTTTTACCTG
CAACTCCGACATTTCAGTTCGACGAAAATGAAATCAAAACTCAAAACCAA
AGCGCTTCAAAGTCTGAGCTTCGCACAGCTCCCGTCGGTGCCACAGAGAT
CGAGAAAGGTGCAAGCGAAGCAAAGGAGTCAACAGAATTGACTTCTGTCG
AACACGCAGCAACATCTTTACAGCAAGAAGAAGCAAACATACCCGACGAC
GAACTTTCACGAGAAGCTAAGAATCTACTTGGTCGTCGCATTCCGGTCAA
CACAGATCGAAGCACAAGGACAGCATTGTCTATCTTTTCTGTGTTCTATG
CAAAGCACCAGAAACTTCTGTACGGTGCAGATGTTGCTGCTCTCAGTAAC
ATCAAAACCCCGTTGCCGACCAAGCAGCGCATAACTGAGAACGCAATCAG
CCTTACTCGACAACATCTATTCCGCGATCGGCGCGGTCTACCATTGTCGA
ACGGCTACGACAAATGGGAGGACTGGCAGTTGCATAGTATCAACAACGCA
CTTATTGAGTTTGTAGCTCATTACCGACAAGCTCGTTCAGGTGAGGAGTT
GGCGCCCGGAACTTTAAAAGTGTACGTTGCAGGTATTCAACGTGCATTCC
GTGAAGATTATAATCTTGATCTGGGTCTTTTGCGAGGACACATCTTCTCG
GACAAGCAGATTGGGTTGTACTGTGCTCTCGACAATAAGGTGAAAGAGCG
ACAAGCTGCTGGTGCAGTTCGTCAAAGCCATAACAATCTGTCTCTCGAAG
ATTTAAAGAGGCTTTACAGTTCCGAGCAACTGTCGAAGAACACTCCCAAG
GGCTTCATGGTACGGATTTTGGTTGACTTGTTGCTGATTACTGCCTTCCG
TAAATCAGAGTTGTGGTCTTTGCGGATGAAAGATGTCACACGTGCGAAAC
AAAATGGTATGGACGCTCTACGCATTGTCGGGCAGATTGGGTCTCGCGAT
GGATCGTCAAAGACACAAAGAGGAGGTCTACATATGGTCAACGTAAGACC
GAAAGAAGTTTTTGTCTTTGATATGGATGTACTGGATGATACAGTGAACA
TCTATAACGACCTTTGTCATTACTTGGATATCGTTGCCCCTACTCGGGAG
GCCGAAGATCGTTTTCTGGCGGCAATCGACTACAGGGCTTCAACCCGTGC
AAAGTTTTTCAAGAAGGGTAATTTGGGTGTCAACAGTATCTACAAGTACG
TCACAGACGCCTGTAATGAGGTGGGCATCAGAGGCGAAGGTGTTTTCGAT
CATGTCACGACACACAGTTTTCGGGCTACTGTAGTGAGTCAATTGAAAGC
GAATGGATTCGATGACTCAAGCGTCGCGCTACGGACTGGAAACCGCGACA
TGCGTTCACTGAAAGCTTACCACAATCTACGCGGCAACATGGGTGTGCAG
CAACAAGCTGCAATATTCGGAAGTTCTGTGGATACTCCTTCGTCTGTTGG
GAACGACGGCGGCTCTGTTCATCGCGCAGAAGTTTCGAAGGCATGCGTCA
ACCGACCATCTGTTCGTAATGATAATACTGTGGCGGTGGAAGTTTTGGAG
GATTGCGACAATCGAAATGAAAGATCTGCGAAAAGACAGCGAACAAATGA
CGTCTTTACTGCTATTGGTAATATGTCGGGGCAGATAACCGTGAACATTA
ACTACTATCATCCACGAGAAAATGAGGAGAAGAAAGAGTGA

protein sequence of Gcaud8293.t1

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=597bp
MALSPSLSQTPQLPISIELVPETPSPLPEEVLPATPTFQFDENEIKTQNQ
SASKSELRTAPVGATEIEKGASEAKESTELTSVEHAATSLQQEEANIPDD
ELSREAKNLLGRRIPVNTDRSTRTALSIFSVFYAKHQKLLYGADVAALSN
IKTPLPTKQRITENAISLTRQHLFRDRRGLPLSNGYDKWEDWQLHSINNA
LIEFVAHYRQARSGEELAPGTLKVYVAGIQRAFREDYNLDLGLLRGHIFS
DKQIGLYCALDNKVKERQAAGAVRQSHNNLSLEDLKRLYSSEQLSKNTPK
GFMVRILVDLLLITAFRKSELWSLRMKDVTRAKQNGMDALRIVGQIGSRD
GSSKTQRGGLHMVNVRPKEVFVFDMDVLDDTVNIYNDLCHYLDIVAPTRE
AEDRFLAAIDYRASTRAKFFKKGNLGVNSIYKYVTDACNEVGIRGEGVFD
HVTTHSFRATVVSQLKANGFDDSSVALRTGNRDMRSLKAYHNLRGNMGVQ
QQAAIFGSSVDTPSSVGNDGGSVHRAEVSKACVNRPSVRNDNTVAVEVLE
DCDNRNERSAKRQRTNDVFTAIGNMSGQITVNINYYHPRENEEKKE*

mRNA from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013- (Gracilaria caudata M_176_S67 male)
ATGGCACTGTCTCCCTCACTCTCGCAAACACCGCAGTTGCCAATCTCCAT
CGAACTTGTCCCAGAGACACCCTCCCCACTACCTGAAGAAGTTTTACCTG
CAACTCCGACATTTCAGTTCGACGAAAATGAAATCAAAACTCAAAACCAA
AGCGCTTCAAAGTCTGAGCTTCGCACAGCTCCCGTCGGTGCCACAGAGAT
CGAGAAAGGTGCAAGCGAAGCAAAGGAGTCAACAGAATTGACTTCTGTCG
AACACGCAGCAACATCTTTACAGCAAGAAGAAGCAAACATACCCGACGAC
GAACTTTCACGAGAAGCTAAGAATCTACTTGGTCGTCGCATTCCGGTCAA
CACAGATCGAAGCACAAGGACAGCATTGTCTATCTTTTCTGTGTTCTATG
CAAAGCACCAGAAACTTCTGTACGGTGCAGATGTTGCTGCTCTCAGTAAC
ATCAAAACCCCGTTGCCGACCAAGCAGCGCATAACTGAGAACGCAATCAG
CCTTACTCGACAACATCTATTCCGCGATCGGCGCGGTCTACCATTGTCGA
ACGGCTACGACAAATGGGAGGACTGGCAGTTGCATAGTATCAACAACGCA
CTTATTGAGTTTGTAGCTCATTACCGACAAGCTCGTTCAGGTGAGGAGTT
GGCGCCCGGAACTTTAAAAGTGTACGTTGCAGGTATTCAACGTGCATTCC
GTGAAGATTATAATCTTGATCTGGGTCTTTTGCGAGGACACATCTTCTCG
GACAAGCAGATTGGGTTGTACTGTGCTCTCGACAATAAGGTGAAAGAGCG
ACAAGCTGCTGGTGCAGTTCGTCAAAGCCATAACAATCTGTCTCTCGAAG
ATTTAAAGAGGCTTTACAGTTCCGAGCAACTGTCGAAGAACACTCCCAAG
GGCTTCATGGTACGGATTTTGGTTGACTTGTTGCTGATTACTGCCTTCCG
TAAATCAGAGTTGTGGTCTTTGCGGATGAAAGATGTCACACGTGCGAAAC
AAAATGGTATGGACGCTCTACGCATTGTCGGGCAGATTGGGTCTCGCGAT
GGATCGTCAAAGACACAAAGAGGAGGTCTACATATGGTCAACGTAAGACC
GAAAGAAGTTTTTGTCTTTGATATGGATGTACTGGATGATACAGTGAACA
TCTATAACGACCTTTGTCATTACTTGGATATCGTTGCCCCTACTCGGGAG
GCCGAAGATCGTTTTCTGGCGGCAATCGACTACAGGGCTTCAACCCGTGC
AAAGTTTTTCAAGAAGGGTAATTTGGGTGTCAACAGTATCTACAAGTACG
TCACAGACGCCTGTAATGAGGTGGGCATCAGAGGCGAAGGTGTTTTCGAT
CATGTCACGACACACAGTTTTCGGGCTACTGTAGTGAGTCAATTGAAAGC
GAATGGATTCGATGACTCAAGCGTCGCGCTACGGACTGGAAACCGCGACA
TGCGTTCACTGAAAGCTTACCACAATCTACGCGGCAACATGGGTGTGCAG
CAACAAGCTGCAATATTCGGAAGTTCTGTGGATACTCCTTCGTCTGTTGG
GAACGACGGCGGCTCTGTTCATCGCGCAGAAGTTTCGAAGGCATGCGTCA
ACCGACCATCTGTTCGTAATGATAATACTGTGGCGGTGGAAGTTTTGGAG
GATTGCGACAATCGAAATGAAAGATCTGCGAAAAGACAGCGAACAAATGA
CGTCTTTACTGCTATTGGTAATATGTCGGGGCAGATAACCGTGAACATTA
ACTACTATCATCCACGAGAAAATGAGGAGAAGAAAGAGTGA

Coding sequence (CDS) from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013-

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1791bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:7223..9013- (Gracilaria caudata M_176_S67 male)
ATGGCACTGTCTCCCTCACTCTCGCAAACACCGCAGTTGCCAATCTCCAT
CGAACTTGTCCCAGAGACACCCTCCCCACTACCTGAAGAAGTTTTACCTG
CAACTCCGACATTTCAGTTCGACGAAAATGAAATCAAAACTCAAAACCAA
AGCGCTTCAAAGTCTGAGCTTCGCACAGCTCCCGTCGGTGCCACAGAGAT
CGAGAAAGGTGCAAGCGAAGCAAAGGAGTCAACAGAATTGACTTCTGTCG
AACACGCAGCAACATCTTTACAGCAAGAAGAAGCAAACATACCCGACGAC
GAACTTTCACGAGAAGCTAAGAATCTACTTGGTCGTCGCATTCCGGTCAA
CACAGATCGAAGCACAAGGACAGCATTGTCTATCTTTTCTGTGTTCTATG
CAAAGCACCAGAAACTTCTGTACGGTGCAGATGTTGCTGCTCTCAGTAAC
ATCAAAACCCCGTTGCCGACCAAGCAGCGCATAACTGAGAACGCAATCAG
CCTTACTCGACAACATCTATTCCGCGATCGGCGCGGTCTACCATTGTCGA
ACGGCTACGACAAATGGGAGGACTGGCAGTTGCATAGTATCAACAACGCA
CTTATTGAGTTTGTAGCTCATTACCGACAAGCTCGTTCAGGTGAGGAGTT
GGCGCCCGGAACTTTAAAAGTGTACGTTGCAGGTATTCAACGTGCATTCC
GTGAAGATTATAATCTTGATCTGGGTCTTTTGCGAGGACACATCTTCTCG
GACAAGCAGATTGGGTTGTACTGTGCTCTCGACAATAAGGTGAAAGAGCG
ACAAGCTGCTGGTGCAGTTCGTCAAAGCCATAACAATCTGTCTCTCGAAG
ATTTAAAGAGGCTTTACAGTTCCGAGCAACTGTCGAAGAACACTCCCAAG
GGCTTCATGGTACGGATTTTGGTTGACTTGTTGCTGATTACTGCCTTCCG
TAAATCAGAGTTGTGGTCTTTGCGGATGAAAGATGTCACACGTGCGAAAC
AAAATGGTATGGACGCTCTACGCATTGTCGGGCAGATTGGGTCTCGCGAT
GGATCGTCAAAGACACAAAGAGGAGGTCTACATATGGTCAACGTAAGACC
GAAAGAAGTTTTTGTCTTTGATATGGATGTACTGGATGATACAGTGAACA
TCTATAACGACCTTTGTCATTACTTGGATATCGTTGCCCCTACTCGGGAG
GCCGAAGATCGTTTTCTGGCGGCAATCGACTACAGGGCTTCAACCCGTGC
AAAGTTTTTCAAGAAGGGTAATTTGGGTGTCAACAGTATCTACAAGTACG
TCACAGACGCCTGTAATGAGGTGGGCATCAGAGGCGAAGGTGTTTTCGAT
CATGTCACGACACACAGTTTTCGGGCTACTGTAGTGAGTCAATTGAAAGC
GAATGGATTCGATGACTCAAGCGTCGCGCTACGGACTGGAAACCGCGACA
TGCGTTCACTGAAAGCTTACCACAATCTACGCGGCAACATGGGTGTGCAG
CAACAAGCTGCAATATTCGGAAGTTCTGTGGATACTCCTTCGTCTGTTGG
GAACGACGGCGGCTCTGTTCATCGCGCAGAAGTTTCGAAGGCATGCGTCA
ACCGACCATCTGTTCGTAATGATAATACTGTGGCGGTGGAAGTTTTGGAG
GATTGCGACAATCGAAATGAAAGATCTGCGAAAAGACAGCGAACAAATGA
CGTCTTTACTGCTATTGGTAATATGTCGGGGCAGATAACCGTGAACATTA
ACTACTATCATCCACGAGAAAATGAGGAGAAGAAAGAGTGA