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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8291.t1.stop1 | Gcaud8291.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1668_length_9166_cov_4.693333 2686..2688 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8291.t1.start1 | Gcaud8291.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1668_length_9166_cov_4.693333 3720..3722 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8291.t1 ID=Gcaud8291.t1|Name=Gcaud8291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MSTMKHVLITQPIDGSVLATEDNRLPVFRFHKNYMSDIQETCTFVEREVR
TSFRLDFLRAEAEELSGPHYGPALLIFVPRGDVVDAPNSYKWVPQNDPLQ
TEAHSIFYMKAVIPSEHDEVIVASALSRIMPNRFRKPLHVDLGRRWMLME
DYGSVIDENEISKSGNSRLGRQILEEWAGIQESSLEVIDELERAGVPLLD
AEQIRQKLEAMVRDPKWYEAQVTEIRRKALREYEEEQFATD* back to topspliced messenger RNA >Gcaud8291.t1 ID=Gcaud8291.t1|Name=Gcaud8291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:2686..3722- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCAACGATGAAGCATGTGTTGATCACACAACCAATCGATGGCAGTGT
TTTGGCAACCGAAGATAACCGTCTGCCCGTTTTCCGATTCCATAAGAACT
ACATGTCAGATATTCAGGAGACATGTACTTTCGTGGAGAGGGAAGTTCGA
ACCTCGTTTCGCTTGGATTTTCTACGTGCCGAAGCCGAAGAGCTAAGTGG
CCCACACTACGGCCCTGCCCTTCTCATATTCGTTCCACGCGGTGACGTTG
TGGACGCACCCAATTCGTACAAGTGGGTGCCTCAAAATGATCCTCTGCAA
ACTGAAGCCCACTCCATTTTCTACATGAAAGCGGTGATTCCATCGGAGCA
TGATGAAGTAATAGTCGCAAGCGCCCTAAGTAGAATAATGCCCAACCGTT
TCCGAAAGCCACTTCATGTTGACCTAGGAAGACGCTGGATGCTCATGGAG
GACTACGGCTCAGTCATAGATGAAAATGAAATTTCCAAAAGCGGAAACTC
TAGACTCGGACGCCAAATCTTGGAAGAATGGGCCGGCATACAGGAATCAT
CACTGGAAGTGATTGATGAGCTAGAAAGGGCCGGTGTGCCTCTACTCGAC
GCCGAACAAATAAGACAGAAACTCGAGGCAATGGTTCGAGACCCCAAGTG
GTATGAAGCACAAGTCACGGAAATTAGACGAAAAGCCTTACGGGAATATG
AAGAAGAACAATTTGCAACCGATTAA back to topprotein sequence of Gcaud8291.t1 >Gcaud8291.t1 ID=Gcaud8291.t1|Name=Gcaud8291.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MSTMKHVLITQPIDGSVLATEDNRLPVFRFHKNYMSDIQETCTFVEREVR
TSFRLDFLRAEAEELSGPHYGPALLIFVPRGDVVDAPNSYKWVPQNDPLQ
TEAHSIFYMKAVIPSEHDEVIVASALSRIMPNRFRKPLHVDLGRRWMLME
DYGSVIDENEISKSGNSRLGRQILEEWAGIQESSLEVIDELERAGVPLLD
AEQIRQKLEAMVRDPKWYEAQVTEIRRKALREYEEEQFATD* back to topmRNA from alignment at NODE_1668_length_9166_cov_4.693333:2686..3722- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8291.t1 ID=Gcaud8291.t1|Name=Gcaud8291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1037bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:2686..3722- (Gracilaria caudata M_176_S67 male)
ATGTCAACGATGAAGCATGTGTTGATCACACAACCAATCGATGGCAGTGT
TTTGGCAACCGAAGATAACCGTCTGCCCGTTTTCCGATTCCATAAGAACT
ACATGTCAGATATTCAGGAGACATGTACTTTCGTGGAGAGGGAAGTTCGA
ACCTCGTTTCGCTTGGATTTTCTACGTGCCGAAGCCGAAGAGCTAAGTGG
CCCACACTACGGCCCTGCCCTTCTCATATTCGTTCCACGCGGTGACGTTG
TGGACGCACCCAATTCGTACAAGTGGGTGCCTCAAAATGATGTAAGCACC
ATACTGATTTTCCCAATCAAGGAGTCAATCGTAAAATACATGAAGCACTA
CAAAACCCTCGGTCTGAACGTGCATTCTGACTCTCTGCGGCCGTACTCTT
GTGTAAATTGGCTTTCCGAAGCCTCTGCGTGGCTGAAGGATAACGTCAAG
CGTTATGCCAACACCAACGTCACCAACATCGAGAAGGTCACTACTGGTAT
GAGCGGGTGCGTGCTGCGTGCAGAAACTGAAGCCCACTCCATTTTCTACA
TGAAAGCGGTGATTCCATCGGAGCATGATGAAGTAATAGTCGCAAGCGCC
CTAAGTAGAATAATGCCCAACCGTTTCCGAAAGCCACTTCATGTTGACCT
AGGAAGACGCTGGATGCTCATGGAGGACTACGGCTCAGTCATAGATGAAA
ATGAAATTTCCAAAAGCGGAAACTCTAGACTCGGACGCCAAATCTTGGAA
GAATGGGCCGGCATACAGGAATCATCACTGGAAGTGATTGATGAGCTAGA
AAGGGCCGGTGTGCCTCTACTCGACGCCGAACAAATAAGACAGAAACTCG
AGGCAATGGTTCGAGACCCCAAGTGGTATGAAGCACAAGTCACGGAAATT
AGACGAAAAGCCTTACGGGAATATGAAGAAGAACAGTACAAGCTTTTGTT
TCTGTCATACGCAAGGAGTGTGCTTAACGAAGTATCCGCGTTTCGCGTTC
CACTTACCCTTGTTCATGGAGATTTGCAACCGATTAA back to topCoding sequence (CDS) from alignment at NODE_1668_length_9166_cov_4.693333:2686..3722- >Gcaud8291.t1 ID=Gcaud8291.t1|Name=Gcaud8291.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:2686..3722- (Gracilaria caudata M_176_S67 male)
ATGTCAACGATGAAGCATGTGTTGATCACACAACCAATCGATGGCAGTGT
TTTGGCAACCGAAGATAACCGTCTGCCCGTTTTCCGATTCCATAAGAACT
ACATGTCAGATATTCAGGAGACATGTACTTTCGTGGAGAGGGAAGTTCGA
ACCTCGTTTCGCTTGGATTTTCTACGTGCCGAAGCCGAAGAGCTAAGTGG
CCCACACTACGGCCCTGCCCTTCTCATATTCGTTCCACGCGGTGACGTTG
TGGACGCACCCAATTCGTACAAGTGGGTGCCTCAAAATGATCCTCTGCAA
ACTGAAGCCCACTCCATTTTCTACATGAAAGCGGTGATTCCATCGGAGCA
TGATGAAGTAATAGTCGCAAGCGCCCTAAGTAGAATAATGCCCAACCGTT
TCCGAAAGCCACTTCATGTTGACCTAGGAAGACGCTGGATGCTCATGGAG
GACTACGGCTCAGTCATAGATGAAAATGAAATTTCCAAAAGCGGAAACTC
TAGACTCGGACGCCAAATCTTGGAAGAATGGGCCGGCATACAGGAATCAT
CACTGGAAGTGATTGATGAGCTAGAAAGGGCCGGTGTGCCTCTACTCGAC
GCCGAACAAATAAGACAGAAACTCGAGGCAATGGTTCGAGACCCCAAGTG
GTATGAAGCACAAGTCACGGAAATTAGACGAAAAGCCTTACGGGAATATG
AAGAAGAACAATTTGCAACCGATTAA back to top
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