Gcaud7848.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7848.t1
Unique Name	Gcaud7848.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1661_length_9227_cov_4.757881	contig	NODE_1661_length_9227_cov_4.757881:1908..2795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_06360T0
PFAMs	MAGE
Max annot lvl	4751\|Fungi
GOs	GO:0000724,GO:0000725,GO:0000793,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0106068,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Evalue	1.13e-10
EggNOG OGs	KOG4562@1\|root,KOG4562@2759\|Eukaryota,3A0G4@33154\|Opisthokonta,3P24N@4751\|Fungi
Description	Melanoma-associated antigen
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7848	Gcaud7848	Gracilaria caudata M_176_S67 male	gene	NODE_1661_length_9227_cov_4.757881 1908..2795 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7848.t1.start1	Gcaud7848.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1661_length_9227_cov_4.757881 1908..1910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7848.t1.CDS1	Gcaud7848.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1661_length_9227_cov_4.757881 1908..2795 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7848.t1.exon1	Gcaud7848.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1661_length_9227_cov_4.757881 1908..2795 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7848.t1.stop1	Gcaud7848.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1661_length_9227_cov_4.757881 2793..2795 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7848.t1	Gcaud7848.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1661_length_9227_cov_4.757881 1908..2795 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+
coding sequence from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+

mRNA sequence

>Gcaud7848.t1 ID=Gcaud7848.t1|Name=Gcaud7848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MGRKRSYSNRASQSQSFVEDNEMLDVNSSSAADGYAALTEAQQDEIAKRI
SRTLMWRQHRKRPVRRTDLSACALKNVPNIRGKPRVFNKAFDKAQDMMRR
TFGFEVKEIQKLTKRKVGGQSRSAGSASQGYGVGYGAKGYILLHKGTRTR
HEVPDILCEIGFLTLIAALISLQPGCRIEEDTLHHTLSKLGVHVREKQGH
KQLNNGNVKDLLENKFVDMWYLEKEKEENVTYYLLGPRLRAELSDDDLLE
FIHAVYKDGPSGQGMLDENGRNEIKARLNDAWGPEGPPDEREEQD*

spliced messenger RNA

>Gcaud7848.t1 ID=Gcaud7848.t1|Name=Gcaud7848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCAAGCGTTCGTATTCAAATCGTGCTTCTCAGAGCCAGAGTTT
TGTCGAAGACAATGAGATGCTGGATGTCAACAGCTCTTCCGCTGCCGACG
GCTACGCGGCACTAACAGAAGCGCAGCAAGACGAAATCGCAAAGCGTATA
TCGAGAACACTTATGTGGCGCCAGCACAGAAAGCGACCTGTGCGACGCAC
AGATCTTAGCGCGTGCGCACTGAAGAACGTGCCAAACATACGAGGAAAAC
CACGAGTTTTCAACAAAGCGTTTGATAAGGCGCAAGATATGATGCGTAGA
ACTTTTGGCTTTGAGGTCAAGGAGATCCAGAAGCTTACTAAGCGTAAAGT
CGGAGGTCAGTCACGTTCGGCTGGCTCGGCTTCCCAAGGATATGGTGTCG
GATACGGAGCTAAAGGTTACATCTTGCTCCACAAGGGTACGAGGACCCGG
CATGAAGTACCGGATATCCTGTGCGAAATCGGATTCCTTACTCTTATAGC
GGCTCTCATTTCCCTTCAGCCTGGGTGCAGGATTGAAGAAGACACATTGC
ACCATACGCTTAGCAAGTTGGGCGTACATGTCCGTGAAAAGCAAGGTCAT
AAGCAGCTAAACAATGGAAACGTGAAAGATTTGCTGGAAAACAAGTTTGT
GGACATGTGGTACTTGGAAAAGGAGAAAGAAGAGAATGTGACATACTATC
TCCTCGGTCCCAGGCTTCGTGCAGAGTTATCCGATGATGATCTACTCGAA
TTCATCCACGCGGTTTACAAAGATGGTCCCAGTGGGCAAGGCATGCTCGA
TGAGAATGGGAGAAATGAAATCAAGGCTAGGCTCAACGACGCATGGGGTC
CAGAAGGCCCTCCAGATGAAAGAGAAGAACAGGACTAG

protein sequence of Gcaud7848.t1

>Gcaud7848.t1 ID=Gcaud7848.t1|Name=Gcaud7848.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MGRKRSYSNRASQSQSFVEDNEMLDVNSSSAADGYAALTEAQQDEIAKRI
SRTLMWRQHRKRPVRRTDLSACALKNVPNIRGKPRVFNKAFDKAQDMMRR
TFGFEVKEIQKLTKRKVGGQSRSAGSASQGYGVGYGAKGYILLHKGTRTR
HEVPDILCEIGFLTLIAALISLQPGCRIEEDTLHHTLSKLGVHVREKQGH
KQLNNGNVKDLLENKFVDMWYLEKEKEENVTYYLLGPRLRAELSDDDLLE
FIHAVYKDGPSGQGMLDENGRNEIKARLNDAWGPEGPPDEREEQD*

mRNA from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7848.t1 ID=Gcaud7848.t1|Name=Gcaud7848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+ (Gracilaria caudata M_176_S67 male)
ATGGGGCGCAAGCGTTCGTATTCAAATCGTGCTTCTCAGAGCCAGAGTTT
TGTCGAAGACAATGAGATGCTGGATGTCAACAGCTCTTCCGCTGCCGACG
GCTACGCGGCACTAACAGAAGCGCAGCAAGACGAAATCGCAAAGCGTATA
TCGAGAACACTTATGTGGCGCCAGCACAGAAAGCGACCTGTGCGACGCAC
AGATCTTAGCGCGTGCGCACTGAAGAACGTGCCAAACATACGAGGAAAAC
CACGAGTTTTCAACAAAGCGTTTGATAAGGCGCAAGATATGATGCGTAGA
ACTTTTGGCTTTGAGGTCAAGGAGATCCAGAAGCTTACTAAGCGTAAAGT
CGGAGGTCAGTCACGTTCGGCTGGCTCGGCTTCCCAAGGATATGGTGTCG
GATACGGAGCTAAAGGTTACATCTTGCTCCACAAGGGTACGAGGACCCGG
CATGAAGTACCGGATATCCTGTGCGAAATCGGATTCCTTACTCTTATAGC
GGCTCTCATTTCCCTTCAGCCTGGGTGCAGGATTGAAGAAGACACATTGC
ACCATACGCTTAGCAAGTTGGGCGTACATGTCCGTGAAAAGCAAGGTCAT
AAGCAGCTAAACAATGGAAACGTGAAAGATTTGCTGGAAAACAAGTTTGT
GGACATGTGGTACTTGGAAAAGGAGAAAGAAGAGAATGTGACATACTATC
TCCTCGGTCCCAGGCTTCGTGCAGAGTTATCCGATGATGATCTACTCGAA
TTCATCCACGCGGTTTACAAAGATGGTCCCAGTGGGCAAGGCATGCTCGA
TGAGAATGGGAGAAATGAAATCAAGGCTAGGCTCAACGACGCATGGGGTC
CAGAAGGCCCTCCAGATGAAAGAGAAGAACAGGACTAG

Coding sequence (CDS) from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+

>Gcaud7848.t1 ID=Gcaud7848.t1|Name=Gcaud7848.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=888bp|location=Sequence derived from alignment at NODE_1661_length_9227_cov_4.757881:1908..2795+ (Gracilaria caudata M_176_S67 male)
ATGGGGCGCAAGCGTTCGTATTCAAATCGTGCTTCTCAGAGCCAGAGTTT
TGTCGAAGACAATGAGATGCTGGATGTCAACAGCTCTTCCGCTGCCGACG
GCTACGCGGCACTAACAGAAGCGCAGCAAGACGAAATCGCAAAGCGTATA
TCGAGAACACTTATGTGGCGCCAGCACAGAAAGCGACCTGTGCGACGCAC
AGATCTTAGCGCGTGCGCACTGAAGAACGTGCCAAACATACGAGGAAAAC
CACGAGTTTTCAACAAAGCGTTTGATAAGGCGCAAGATATGATGCGTAGA
ACTTTTGGCTTTGAGGTCAAGGAGATCCAGAAGCTTACTAAGCGTAAAGT
CGGAGGTCAGTCACGTTCGGCTGGCTCGGCTTCCCAAGGATATGGTGTCG
GATACGGAGCTAAAGGTTACATCTTGCTCCACAAGGGTACGAGGACCCGG
CATGAAGTACCGGATATCCTGTGCGAAATCGGATTCCTTACTCTTATAGC
GGCTCTCATTTCCCTTCAGCCTGGGTGCAGGATTGAAGAAGACACATTGC
ACCATACGCTTAGCAAGTTGGGCGTACATGTCCGTGAAAAGCAAGGTCAT
AAGCAGCTAAACAATGGAAACGTGAAAGATTTGCTGGAAAACAAGTTTGT
GGACATGTGGTACTTGGAAAAGGAGAAAGAAGAGAATGTGACATACTATC
TCCTCGGTCCCAGGCTTCGTGCAGAGTTATCCGATGATGATCTACTCGAA
TTCATCCACGCGGTTTACAAAGATGGTCCCAGTGGGCAAGGCATGCTCGA
TGAGAATGGGAGAAATGAAATCAAGGCTAGGCTCAACGACGCATGGGGTC
CAGAAGGCCCTCCAGATGAAAGAGAAGAACAGGACTAG