Gcaud2324.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2324.t1
Unique NameGcaud2324.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10099_length_570_cov_6.945720contigNODE_10099_length_570_cov_6.945720:2..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314230.DSM3645_20172
PFAMsAn_peroxidase,Dockerin_1,SdrD_B
Max annot lvl203682|Planctomycetes
Evalue1.46e-40
EggNOG OGsCOG2373@1|root,COG2373@2|Bacteria,2IY3Z@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2324Gcaud2324Gracilaria caudata M_176_S67 malegeneNODE_10099_length_570_cov_6.945720 2..570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2324.t1.CDS1Gcaud2324.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10099_length_570_cov_6.945720 2..570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2324.t1.exon1Gcaud2324.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10099_length_570_cov_6.945720 2..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2324.t1Gcaud2324.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10099_length_570_cov_6.945720 2..570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2324.t1 ID=Gcaud2324.t1|Name=Gcaud2324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=190bp
XPTISVEFTTAGFRLGHTMVGNGVSRIDANGQRLPLITMEQMFFRDSNLA
IGEVENFIRGAAGTRAQEVDTLVVDALRNFLFSNVPEEAGFDLIALNLQR
SRDHNVPRFNQLRRFFLGSPATTFRQITPDLDVQKKLEQAYGTVDNVEAW
VGLMAERKRGRSGLGRTNEELWKTEFTRLRDGDRFFYLDN
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spliced messenger RNA

>Gcaud2324.t1 ID=Gcaud2324.t1|Name=Gcaud2324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=569bp|location=Sequence derived from alignment at NODE_10099_length_570_cov_6.945720:2..570+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ACCCCACTATTAGTGTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCAC
ACCATGGTTGGCAACGGAGTGAGCAGGATCGACGCCAACGGTCAACGACT
CCCGCTCATTACCATGGAGCAGATGTTCTTCCGCGACAGCAATCTCGCCA
TCGGAGAGGTCGAGAACTTCATCCGCGGTGCTGCTGGAACACGTGCGCAG
GAAGTGGACACTCTGGTGGTGGACGCGCTCCGCAATTTCCTGTTCAGCAA
TGTTCCCGAGGAAGCCGGATTCGATCTGATTGCGCTCAATCTACAGAGGA
GTCGTGATCACAATGTGCCGCGTTTCAACCAGCTTCGTCGATTCTTCCTT
GGCTCTCCGGCTACGACTTTCCGCCAAATCACTCCTGACCTCGATGTTCA
GAAGAAACTTGAGCAAGCGTACGGCACTGTTGACAACGTGGAAGCTTGGG
TTGGGTTGATGGCGGAAAGAAAGCGAGGACGGTCTGGTCTCGGTCGCACT
AATGAAGAGTTGTGGAAGACAGAATTCACCCGTCTTCGTGATGGTGACAG
GTTCTTTTACCTCGACAAC
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protein sequence of Gcaud2324.t1

>Gcaud2324.t1 ID=Gcaud2324.t1|Name=Gcaud2324.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=190bp
XPTISVEFTTAGFRLGHTMVGNGVSRIDANGQRLPLITMEQMFFRDSNLA
IGEVENFIRGAAGTRAQEVDTLVVDALRNFLFSNVPEEAGFDLIALNLQR
SRDHNVPRFNQLRRFFLGSPATTFRQITPDLDVQKKLEQAYGTVDNVEAW
VGLMAERKRGRSGLGRTNEELWKTEFTRLRDGDRFFYLDN
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mRNA from alignment at NODE_10099_length_570_cov_6.945720:2..570+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2324.t1 ID=Gcaud2324.t1|Name=Gcaud2324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=569bp|location=Sequence derived from alignment at NODE_10099_length_570_cov_6.945720:2..570+ (Gracilaria caudata M_176_S67 male)
ACCCCACTATTAGTGTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCAC
ACCATGGTTGGCAACGGAGTGAGCAGGATCGACGCCAACGGTCAACGACT
CCCGCTCATTACCATGGAGCAGATGTTCTTCCGCGACAGCAATCTCGCCA
TCGGAGAGGTCGAGAACTTCATCCGCGGTGCTGCTGGAACACGTGCGCAG
GAAGTGGACACTCTGGTGGTGGACGCGCTCCGCAATTTCCTGTTCAGCAA
TGTTCCCGAGGAAGCCGGATTCGATCTGATTGCGCTCAATCTACAGAGGA
GTCGTGATCACAATGTGCCGCGTTTCAACCAGCTTCGTCGATTCTTCCTT
GGCTCTCCGGCTACGACTTTCCGCCAAATCACTCCTGACCTCGATGTTCA
GAAGAAACTTGAGCAAGCGTACGGCACTGTTGACAACGTGGAAGCTTGGG
TTGGGTTGATGGCGGAAAGAAAGCGAGGACGGTCTGGTCTCGGTCGCACT
AATGAAGAGTTGTGGAAGACAGAATTCACCCGTCTTCGTGATGGTGACAG
GTTCTTTTACCTCGACAAC
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Coding sequence (CDS) from alignment at NODE_10099_length_570_cov_6.945720:2..570+

>Gcaud2324.t1 ID=Gcaud2324.t1|Name=Gcaud2324.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=569bp|location=Sequence derived from alignment at NODE_10099_length_570_cov_6.945720:2..570+ (Gracilaria caudata M_176_S67 male)
ACCCCACTATTAGTGTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCAC
ACCATGGTTGGCAACGGAGTGAGCAGGATCGACGCCAACGGTCAACGACT
CCCGCTCATTACCATGGAGCAGATGTTCTTCCGCGACAGCAATCTCGCCA
TCGGAGAGGTCGAGAACTTCATCCGCGGTGCTGCTGGAACACGTGCGCAG
GAAGTGGACACTCTGGTGGTGGACGCGCTCCGCAATTTCCTGTTCAGCAA
TGTTCCCGAGGAAGCCGGATTCGATCTGATTGCGCTCAATCTACAGAGGA
GTCGTGATCACAATGTGCCGCGTTTCAACCAGCTTCGTCGATTCTTCCTT
GGCTCTCCGGCTACGACTTTCCGCCAAATCACTCCTGACCTCGATGTTCA
GAAGAAACTTGAGCAAGCGTACGGCACTGTTGACAACGTGGAAGCTTGGG
TTGGGTTGATGGCGGAAAGAAAGCGAGGACGGTCTGGTCTCGGTCGCACT
AATGAAGAGTTGTGGAAGACAGAATTCACCCGTCTTCGTGATGGTGACAG
GTTCTTTTACCTCGACAAC
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