Gcaud8364.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8364.t1
Unique Name	Gcaud8364.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:16892..18583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706023.1
Preferred name	ASNB
PFAMs	Asn_synthase,GATase_7,NAD_synthase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010
KEGG ko	ko:K01953
KEGG Reaction	R00578
KEGG Pathway	ko00250,ko01100,ko01110,map00250,map01100,map01110
Evalue	1.42e-283
EggNOG OGs	COG0367@1\|root,KOG0571@2759\|Eukaryota
EC	6.3.5.4
Description	L-asparagine biosynthetic process
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8364	Gcaud8364	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 16892..18583 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8364.t1.start1	Gcaud8364.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 16892..16894 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8364.t1.CDS1	Gcaud8364.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 16892..18583 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8364.t1.exon1	Gcaud8364.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 16892..18583 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8364.t1.stop1	Gcaud8364.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 18581..18583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8364.t1	Gcaud8364.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 16892..18583 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+

mRNA sequence

>Gcaud8364.t1 ID=Gcaud8364.t1|Name=Gcaud8364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp
MCGIFAVLGSSLSREELVQLTISATNKLQHRGPDDLQTFVSDDGWAALGF
ARLQINDPEHGAQPMHISDDTIWAVTNGEIYNHSQLRTSELDEIPLRSKS
DCEVIAPLYEKYATSLFPHDISHLYNTLKGVFATVVVDLARKQFVAARDP
IGVRAMYLGRSSDGAVWIASEAKAILDHCQFVTPFLPGCYYAAKRGHEQD
SDFVPYYNPMFYNPGWLPTERVNLQKLHDSFKQACVRRLMSDVPVGVFIS
GGLDSSLVASVLKKALPADYVFHSFSCGLEGSPDLQAAQRVADFLGTEHH
VLTFTVEDGIRALEQVVYHLETYDITTIRASTPMFLLSKLVKQYVKVVLS
GEGADEVFGGYLYFHNADSEQAFYEETVRRVKLLYTSDVLRGDRSTAAQS
LELRVPFLDRDFLDVAMCYSAKDKVTDKGKRIEKWAIRHAFSEHFCGEQY
LPDDILMRPKEQFSDGVGYNWIDGLKDYCDEQVTDKMMREAPQTFKHDPP
VTKEAYYYRILFEKIFGKYEGAQGLREGVRKWIPLWSDSDDPSGRAQKFH
AAAYVKTMNGTSH*

spliced messenger RNA

>Gcaud8364.t1 ID=Gcaud8364.t1|Name=Gcaud8364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGAATCTTCGCGGTTCTCGGTAGCTCCCTCTCTCGGGAGGAGCT
CGTGCAGCTCACCATAAGTGCCACGAACAAGCTTCAGCACCGTGGTCCGG
ATGATCTTCAGACCTTCGTCAGCGACGACGGCTGGGCCGCGCTCGGCTTT
GCTCGTCTTCAGATCAACGACCCTGAGCACGGAGCACAGCCTATGCATAT
CTCCGACGATACCATTTGGGCCGTCACCAACGGTGAGATCTACAACCACT
CTCAACTTCGCACCTCCGAGCTCGACGAAATCCCTCTTCGATCCAAATCC
GACTGCGAGGTAATTGCTCCGCTTTATGAAAAGTATGCTACCTCTCTGTT
CCCGCATGATATCTCTCACCTCTACAACACGCTCAAGGGTGTGTTTGCTA
CCGTTGTCGTCGACCTTGCTCGCAAGCAGTTTGTGGCTGCCAGGGATCCC
ATTGGCGTGCGAGCTATGTATCTTGGTCGTTCCTCGGATGGCGCTGTGTG
GATTGCGTCCGAAGCCAAGGCCATTCTTGATCATTGCCAATTCGTCACTC
CCTTTCTTCCCGGTTGTTACTATGCTGCCAAACGAGGTCACGAGCAGGAC
TCTGATTTTGTGCCGTACTACAACCCGATGTTTTACAACCCTGGCTGGCT
ACCCACTGAAAGAGTCAACCTGCAAAAGCTGCACGACTCATTCAAGCAGG
CCTGTGTGCGTCGTCTCATGTCCGATGTGCCGGTTGGCGTCTTCATCTCG
GGAGGTTTGGACTCCTCGCTTGTTGCCAGTGTGCTGAAGAAAGCACTTCC
TGCCGACTATGTATTCCACAGTTTCTCGTGTGGTCTGGAGGGTTCTCCTG
ACCTCCAAGCTGCTCAAAGAGTCGCGGACTTCTTGGGCACCGAGCACCAT
GTCCTTACCTTCACTGTAGAGGACGGCATTAGAGCATTAGAGCAGGTGGT
GTACCACTTGGAGACTTATGACATCACCACCATCCGGGCATCCACCCCAA
TGTTCCTGCTTTCCAAGCTTGTCAAGCAATACGTTAAGGTCGTTCTGAGT
GGAGAGGGAGCTGATGAGGTGTTCGGTGGGTATCTGTATTTCCATAATGC
CGACTCAGAACAGGCCTTTTATGAGGAAACCGTCCGCCGTGTCAAGCTTT
TGTACACGTCTGACGTTCTACGCGGTGATCGGTCTACTGCAGCTCAAAGT
TTGGAGCTCAGAGTACCCTTCCTCGATCGCGACTTTCTGGATGTCGCCAT
GTGTTATTCCGCGAAGGATAAGGTCACCGATAAGGGGAAGCGAATTGAAA
AATGGGCCATTCGCCATGCCTTCTCAGAGCATTTTTGTGGAGAGCAGTAC
TTGCCAGATGATATTCTCATGAGACCAAAGGAGCAATTCTCAGACGGCGT
GGGCTACAACTGGATCGATGGGCTGAAGGATTACTGTGATGAACAGGTGA
CTGATAAGATGATGCGGGAGGCTCCACAGACCTTCAAACATGATCCCCCG
GTTACTAAGGAAGCTTATTATTATCGTATTTTGTTTGAAAAGATCTTTGG
CAAGTATGAGGGCGCTCAGGGCCTGCGAGAAGGTGTGCGCAAGTGGATTC
CTCTCTGGTCAGATAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCCTACGTCAAGACTATGAACGGAACTTCTCATTAA

protein sequence of Gcaud8364.t1

>Gcaud8364.t1 ID=Gcaud8364.t1|Name=Gcaud8364.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=564bp
MCGIFAVLGSSLSREELVQLTISATNKLQHRGPDDLQTFVSDDGWAALGF
ARLQINDPEHGAQPMHISDDTIWAVTNGEIYNHSQLRTSELDEIPLRSKS
DCEVIAPLYEKYATSLFPHDISHLYNTLKGVFATVVVDLARKQFVAARDP
IGVRAMYLGRSSDGAVWIASEAKAILDHCQFVTPFLPGCYYAAKRGHEQD
SDFVPYYNPMFYNPGWLPTERVNLQKLHDSFKQACVRRLMSDVPVGVFIS
GGLDSSLVASVLKKALPADYVFHSFSCGLEGSPDLQAAQRVADFLGTEHH
VLTFTVEDGIRALEQVVYHLETYDITTIRASTPMFLLSKLVKQYVKVVLS
GEGADEVFGGYLYFHNADSEQAFYEETVRRVKLLYTSDVLRGDRSTAAQS
LELRVPFLDRDFLDVAMCYSAKDKVTDKGKRIEKWAIRHAFSEHFCGEQY
LPDDILMRPKEQFSDGVGYNWIDGLKDYCDEQVTDKMMREAPQTFKHDPP
VTKEAYYYRILFEKIFGKYEGAQGLREGVRKWIPLWSDSDDPSGRAQKFH
AAAYVKTMNGTSH*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8364.t1 ID=Gcaud8364.t1|Name=Gcaud8364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+ (Gracilaria caudata M_176_S67 male)
ATGTGCGGAATCTTCGCGGTTCTCGGTAGCTCCCTCTCTCGGGAGGAGCT
CGTGCAGCTCACCATAAGTGCCACGAACAAGCTTCAGCACCGTGGTCCGG
ATGATCTTCAGACCTTCGTCAGCGACGACGGCTGGGCCGCGCTCGGCTTT
GCTCGTCTTCAGATCAACGACCCTGAGCACGGAGCACAGCCTATGCATAT
CTCCGACGATACCATTTGGGCCGTCACCAACGGTGAGATCTACAACCACT
CTCAACTTCGCACCTCCGAGCTCGACGAAATCCCTCTTCGATCCAAATCC
GACTGCGAGGTAATTGCTCCGCTTTATGAAAAGTATGCTACCTCTCTGTT
CCCGCATGATATCTCTCACCTCTACAACACGCTCAAGGGTGTGTTTGCTA
CCGTTGTCGTCGACCTTGCTCGCAAGCAGTTTGTGGCTGCCAGGGATCCC
ATTGGCGTGCGAGCTATGTATCTTGGTCGTTCCTCGGATGGCGCTGTGTG
GATTGCGTCCGAAGCCAAGGCCATTCTTGATCATTGCCAATTCGTCACTC
CCTTTCTTCCCGGTTGTTACTATGCTGCCAAACGAGGTCACGAGCAGGAC
TCTGATTTTGTGCCGTACTACAACCCGATGTTTTACAACCCTGGCTGGCT
ACCCACTGAAAGAGTCAACCTGCAAAAGCTGCACGACTCATTCAAGCAGG
CCTGTGTGCGTCGTCTCATGTCCGATGTGCCGGTTGGCGTCTTCATCTCG
GGAGGTTTGGACTCCTCGCTTGTTGCCAGTGTGCTGAAGAAAGCACTTCC
TGCCGACTATGTATTCCACAGTTTCTCGTGTGGTCTGGAGGGTTCTCCTG
ACCTCCAAGCTGCTCAAAGAGTCGCGGACTTCTTGGGCACCGAGCACCAT
GTCCTTACCTTCACTGTAGAGGACGGCATTAGAGCATTAGAGCAGGTGGT
GTACCACTTGGAGACTTATGACATCACCACCATCCGGGCATCCACCCCAA
TGTTCCTGCTTTCCAAGCTTGTCAAGCAATACGTTAAGGTCGTTCTGAGT
GGAGAGGGAGCTGATGAGGTGTTCGGTGGGTATCTGTATTTCCATAATGC
CGACTCAGAACAGGCCTTTTATGAGGAAACCGTCCGCCGTGTCAAGCTTT
TGTACACGTCTGACGTTCTACGCGGTGATCGGTCTACTGCAGCTCAAAGT
TTGGAGCTCAGAGTACCCTTCCTCGATCGCGACTTTCTGGATGTCGCCAT
GTGTTATTCCGCGAAGGATAAGGTCACCGATAAGGGGAAGCGAATTGAAA
AATGGGCCATTCGCCATGCCTTCTCAGAGCATTTTTGTGGAGAGCAGTAC
TTGCCAGATGATATTCTCATGAGACCAAAGGAGCAATTCTCAGACGGCGT
GGGCTACAACTGGATCGATGGGCTGAAGGATTACTGTGATGAACAGGTGA
CTGATAAGATGATGCGGGAGGCTCCACAGACCTTCAAACATGATCCCCCG
GTTACTAAGGAAGCTTATTATTATCGTATTTTGTTTGAAAAGATCTTTGG
CAAGTATGAGGGCGCTCAGGGCCTGCGAGAAGGTGTGCGCAAGTGGATTC
CTCTCTGGTCAGATAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCCTACGTCAAGACTATGAACGGAACTTCTCATTAA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+

>Gcaud8364.t1 ID=Gcaud8364.t1|Name=Gcaud8364.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1692bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:16892..18583+ (Gracilaria caudata M_176_S67 male)
ATGTGCGGAATCTTCGCGGTTCTCGGTAGCTCCCTCTCTCGGGAGGAGCT
CGTGCAGCTCACCATAAGTGCCACGAACAAGCTTCAGCACCGTGGTCCGG
ATGATCTTCAGACCTTCGTCAGCGACGACGGCTGGGCCGCGCTCGGCTTT
GCTCGTCTTCAGATCAACGACCCTGAGCACGGAGCACAGCCTATGCATAT
CTCCGACGATACCATTTGGGCCGTCACCAACGGTGAGATCTACAACCACT
CTCAACTTCGCACCTCCGAGCTCGACGAAATCCCTCTTCGATCCAAATCC
GACTGCGAGGTAATTGCTCCGCTTTATGAAAAGTATGCTACCTCTCTGTT
CCCGCATGATATCTCTCACCTCTACAACACGCTCAAGGGTGTGTTTGCTA
CCGTTGTCGTCGACCTTGCTCGCAAGCAGTTTGTGGCTGCCAGGGATCCC
ATTGGCGTGCGAGCTATGTATCTTGGTCGTTCCTCGGATGGCGCTGTGTG
GATTGCGTCCGAAGCCAAGGCCATTCTTGATCATTGCCAATTCGTCACTC
CCTTTCTTCCCGGTTGTTACTATGCTGCCAAACGAGGTCACGAGCAGGAC
TCTGATTTTGTGCCGTACTACAACCCGATGTTTTACAACCCTGGCTGGCT
ACCCACTGAAAGAGTCAACCTGCAAAAGCTGCACGACTCATTCAAGCAGG
CCTGTGTGCGTCGTCTCATGTCCGATGTGCCGGTTGGCGTCTTCATCTCG
GGAGGTTTGGACTCCTCGCTTGTTGCCAGTGTGCTGAAGAAAGCACTTCC
TGCCGACTATGTATTCCACAGTTTCTCGTGTGGTCTGGAGGGTTCTCCTG
ACCTCCAAGCTGCTCAAAGAGTCGCGGACTTCTTGGGCACCGAGCACCAT
GTCCTTACCTTCACTGTAGAGGACGGCATTAGAGCATTAGAGCAGGTGGT
GTACCACTTGGAGACTTATGACATCACCACCATCCGGGCATCCACCCCAA
TGTTCCTGCTTTCCAAGCTTGTCAAGCAATACGTTAAGGTCGTTCTGAGT
GGAGAGGGAGCTGATGAGGTGTTCGGTGGGTATCTGTATTTCCATAATGC
CGACTCAGAACAGGCCTTTTATGAGGAAACCGTCCGCCGTGTCAAGCTTT
TGTACACGTCTGACGTTCTACGCGGTGATCGGTCTACTGCAGCTCAAAGT
TTGGAGCTCAGAGTACCCTTCCTCGATCGCGACTTTCTGGATGTCGCCAT
GTGTTATTCCGCGAAGGATAAGGTCACCGATAAGGGGAAGCGAATTGAAA
AATGGGCCATTCGCCATGCCTTCTCAGAGCATTTTTGTGGAGAGCAGTAC
TTGCCAGATGATATTCTCATGAGACCAAAGGAGCAATTCTCAGACGGCGT
GGGCTACAACTGGATCGATGGGCTGAAGGATTACTGTGATGAACAGGTGA
CTGATAAGATGATGCGGGAGGCTCCACAGACCTTCAAACATGATCCCCCG
GTTACTAAGGAAGCTTATTATTATCGTATTTTGTTTGAAAAGATCTTTGG
CAAGTATGAGGGCGCTCAGGGCCTGCGAGAAGGTGTGCGCAAGTGGATTC
CTCTCTGGTCAGATAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCCTACGTCAAGACTATGAACGGAACTTCTCATTAA