Gcaud8363.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8363.t1
Unique Name	Gcaud8363.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:13671..15590 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8363	Gcaud8363	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 13671..15590 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8363.t1.start1	Gcaud8363.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 13671..13673 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8363.t1.CDS1	Gcaud8363.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 13671..15590 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8363.t1.exon1	Gcaud8363.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 13671..15590 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8363.t1.stop1	Gcaud8363.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 15588..15590 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8363.t1	Gcaud8363.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 13671..15590 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+

mRNA sequence

>Gcaud8363.t1 ID=Gcaud8363.t1|Name=Gcaud8363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=640bp
MNFLRTRSASQRDNPEDEHLESRLNANFKELSPDDVDGFYFAIENSVEEL
DTRVEAARQATERGTQDADDFYANDLPPAFFVAEQESHMFTAAEVNKALH
REDTEFMRRSSLVRRASSFRAKDEARPIPSGISTQEPSQRENGRSKSLLG
IYGSRTSPFKWSLSNYLQSVASTREKRIIAVSAWLLALIGLIISLAFVTK
DFLKSREELASTIGFEKTDLVDLPTLHFCTTGTQLPPFSQLPNGPYQGQP
LVWLDTIRGTSSNASFLYPETKSLPQLRVESFTAAGSRCIALNQMDTAQF
ELENTKPPSCFHCLTIERDSLFRLKERDATSTGAFSNKFIVRLSQNTLVP
RCRKLSFGLPLFLTDFFREVFVHHSLDLKLRGIMDYGGYDPQNEAQSYIL
WPRYRRGFQNKTTDIRMVDQSDMFCNVYMFSGYFYPSTSAEIRYRFNSES
FTWERRGTGPYYPKDFRSVSNEHAGLSTQSMSTTIGEELLEDKALYPGQH
LFVMTNYSEDGVNELLGVVPAEKKASLQLERNLILGKNESFRSHTILEEV
RSGDVKTKADVYVVEFSMLSFLTRVVGKQLSVSWSAFIADFFGLTSLFLD
ISVYTLIISPLIVRARKRNLRLRKRQRRENENNAASQQG*

spliced messenger RNA

>Gcaud8363.t1 ID=Gcaud8363.t1|Name=Gcaud8363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCCTCAGAACGAGAAGTGCATCACAGCGAGACAATCCAGAAGA
TGAGCACCTTGAAAGCCGACTAAACGCAAATTTCAAAGAACTTAGCCCCG
ACGATGTAGATGGGTTCTACTTTGCCATTGAAAACTCCGTTGAAGAGCTT
GACACCCGAGTGGAGGCTGCACGGCAAGCAACAGAGCGAGGAACGCAGGA
TGCTGACGACTTCTATGCCAATGACCTACCTCCAGCCTTTTTCGTTGCTG
AGCAAGAGAGCCATATGTTCACGGCGGCTGAAGTAAACAAAGCGTTGCAT
AGAGAAGATACTGAATTCATGAGACGTTCATCGCTTGTTCGCAGAGCCTC
TTCATTTCGCGCCAAGGACGAAGCACGGCCGATACCCAGCGGAATTTCAA
CACAAGAACCCAGTCAACGTGAAAATGGACGATCAAAGTCTCTCCTGGGC
ATTTATGGGTCTCGCACATCGCCATTTAAGTGGAGTCTTTCAAACTATCT
CCAATCTGTCGCCAGTACAAGGGAAAAAAGAATTATAGCCGTATCGGCAT
GGTTGTTGGCTCTGATTGGTCTCATCATTTCGTTGGCTTTCGTGACGAAA
GACTTTTTGAAGAGTAGAGAAGAATTGGCAAGCACAATTGGGTTCGAGAA
AACCGACTTGGTTGATCTACCAACTCTACATTTCTGCACAACTGGTACTC
AACTACCTCCTTTCTCACAACTTCCAAATGGACCGTATCAAGGGCAACCT
TTGGTATGGCTTGATACCATCCGAGGAACAAGTTCGAATGCGAGCTTTCT
GTATCCAGAGACAAAATCATTACCGCAGTTGAGGGTGGAGTCTTTCACAG
CGGCTGGCAGCCGATGCATTGCTTTAAATCAAATGGACACAGCACAGTTT
GAGTTAGAAAACACAAAACCGCCATCATGCTTTCACTGTTTAACAATAGA
GAGAGACAGCCTATTTCGGCTCAAAGAAAGAGACGCGACGAGTACTGGAG
CATTCTCGAACAAGTTCATTGTGCGGCTCTCTCAAAATACGTTAGTGCCG
AGGTGTAGAAAGCTTTCGTTCGGTTTACCGCTCTTTCTGACTGACTTTTT
TAGAGAGGTGTTTGTGCACCATAGCTTGGACTTGAAGCTCCGTGGAATCA
TGGATTACGGGGGGTATGATCCGCAAAATGAGGCGCAGAGCTACATCCTG
TGGCCAAGATATCGAAGGGGATTTCAAAACAAAACTACGGACATTAGAAT
GGTAGACCAGTCAGACATGTTCTGCAATGTGTACATGTTTTCAGGATACT
TTTATCCGTCCACTTCTGCTGAGATTCGTTATAGATTCAACAGTGAAAGC
TTTACGTGGGAACGAAGAGGGACCGGGCCGTATTATCCCAAAGATTTTCG
TTCGGTTTCAAATGAGCATGCGGGACTCAGCACGCAAAGCATGAGTACAA
CAATCGGCGAAGAACTCCTAGAAGACAAGGCGTTATACCCAGGTCAGCAT
TTGTTCGTCATGACAAACTATTCTGAAGACGGAGTGAATGAGTTGCTAGG
AGTAGTTCCTGCTGAGAAGAAAGCATCGTTACAACTTGAACGAAATCTAA
TTCTGGGGAAGAACGAATCGTTTCGATCACACACGATTCTAGAAGAAGTT
CGAAGCGGTGACGTGAAGACAAAGGCAGACGTTTACGTGGTTGAGTTCAG
CATGTTGAGCTTTCTGACGAGAGTGGTGGGCAAACAACTCTCTGTTTCTT
GGTCGGCATTCATCGCGGACTTTTTTGGGTTGACATCATTGTTCTTGGAT
ATATCCGTGTACACCCTGATAATCTCGCCGCTGATAGTAAGAGCTCGCAA
ACGAAACCTGCGTCTCAGGAAGAGGCAACGACGTGAGAATGAAAACAACG
CAGCGTCTCAGCAAGGCTAG

protein sequence of Gcaud8363.t1

>Gcaud8363.t1 ID=Gcaud8363.t1|Name=Gcaud8363.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=640bp
MNFLRTRSASQRDNPEDEHLESRLNANFKELSPDDVDGFYFAIENSVEEL
DTRVEAARQATERGTQDADDFYANDLPPAFFVAEQESHMFTAAEVNKALH
REDTEFMRRSSLVRRASSFRAKDEARPIPSGISTQEPSQRENGRSKSLLG
IYGSRTSPFKWSLSNYLQSVASTREKRIIAVSAWLLALIGLIISLAFVTK
DFLKSREELASTIGFEKTDLVDLPTLHFCTTGTQLPPFSQLPNGPYQGQP
LVWLDTIRGTSSNASFLYPETKSLPQLRVESFTAAGSRCIALNQMDTAQF
ELENTKPPSCFHCLTIERDSLFRLKERDATSTGAFSNKFIVRLSQNTLVP
RCRKLSFGLPLFLTDFFREVFVHHSLDLKLRGIMDYGGYDPQNEAQSYIL
WPRYRRGFQNKTTDIRMVDQSDMFCNVYMFSGYFYPSTSAEIRYRFNSES
FTWERRGTGPYYPKDFRSVSNEHAGLSTQSMSTTIGEELLEDKALYPGQH
LFVMTNYSEDGVNELLGVVPAEKKASLQLERNLILGKNESFRSHTILEEV
RSGDVKTKADVYVVEFSMLSFLTRVVGKQLSVSWSAFIADFFGLTSLFLD
ISVYTLIISPLIVRARKRNLRLRKRQRRENENNAASQQG*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8363.t1 ID=Gcaud8363.t1|Name=Gcaud8363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCCTCAGAACGAGAAGTGCATCACAGCGAGACAATCCAGAAGA
TGAGCACCTTGAAAGCCGACTAAACGCAAATTTCAAAGAACTTAGCCCCG
ACGATGTAGATGGGTTCTACTTTGCCATTGAAAACTCCGTTGAAGAGCTT
GACACCCGAGTGGAGGCTGCACGGCAAGCAACAGAGCGAGGAACGCAGGA
TGCTGACGACTTCTATGCCAATGACCTACCTCCAGCCTTTTTCGTTGCTG
AGCAAGAGAGCCATATGTTCACGGCGGCTGAAGTAAACAAAGCGTTGCAT
AGAGAAGATACTGAATTCATGAGACGTTCATCGCTTGTTCGCAGAGCCTC
TTCATTTCGCGCCAAGGACGAAGCACGGCCGATACCCAGCGGAATTTCAA
CACAAGAACCCAGTCAACGTGAAAATGGACGATCAAAGTCTCTCCTGGGC
ATTTATGGGTCTCGCACATCGCCATTTAAGTGGAGTCTTTCAAACTATCT
CCAATCTGTCGCCAGTACAAGGGAAAAAAGAATTATAGCCGTATCGGCAT
GGTTGTTGGCTCTGATTGGTCTCATCATTTCGTTGGCTTTCGTGACGAAA
GACTTTTTGAAGAGTAGAGAAGAATTGGCAAGCACAATTGGGTTCGAGAA
AACCGACTTGGTTGATCTACCAACTCTACATTTCTGCACAACTGGTACTC
AACTACCTCCTTTCTCACAACTTCCAAATGGACCGTATCAAGGGCAACCT
TTGGTATGGCTTGATACCATCCGAGGAACAAGTTCGAATGCGAGCTTTCT
GTATCCAGAGACAAAATCATTACCGCAGTTGAGGGTGGAGTCTTTCACAG
CGGCTGGCAGCCGATGCATTGCTTTAAATCAAATGGACACAGCACAGTTT
GAGTTAGAAAACACAAAACCGCCATCATGCTTTCACTGTTTAACAATAGA
GAGAGACAGCCTATTTCGGCTCAAAGAAAGAGACGCGACGAGTACTGGAG
CATTCTCGAACAAGTTCATTGTGCGGCTCTCTCAAAATACGTTAGTGCCG
AGGTGTAGAAAGCTTTCGTTCGGTTTACCGCTCTTTCTGACTGACTTTTT
TAGAGAGGTGTTTGTGCACCATAGCTTGGACTTGAAGCTCCGTGGAATCA
TGGATTACGGGGGGTATGATCCGCAAAATGAGGCGCAGAGCTACATCCTG
TGGCCAAGATATCGAAGGGGATTTCAAAACAAAACTACGGACATTAGAAT
GGTAGACCAGTCAGACATGTTCTGCAATGTGTACATGTTTTCAGGATACT
TTTATCCGTCCACTTCTGCTGAGATTCGTTATAGATTCAACAGTGAAAGC
TTTACGTGGGAACGAAGAGGGACCGGGCCGTATTATCCCAAAGATTTTCG
TTCGGTTTCAAATGAGCATGCGGGACTCAGCACGCAAAGCATGAGTACAA
CAATCGGCGAAGAACTCCTAGAAGACAAGGCGTTATACCCAGGTCAGCAT
TTGTTCGTCATGACAAACTATTCTGAAGACGGAGTGAATGAGTTGCTAGG
AGTAGTTCCTGCTGAGAAGAAAGCATCGTTACAACTTGAACGAAATCTAA
TTCTGGGGAAGAACGAATCGTTTCGATCACACACGATTCTAGAAGAAGTT
CGAAGCGGTGACGTGAAGACAAAGGCAGACGTTTACGTGGTTGAGTTCAG
CATGTTGAGCTTTCTGACGAGAGTGGTGGGCAAACAACTCTCTGTTTCTT
GGTCGGCATTCATCGCGGACTTTTTTGGGTTGACATCATTGTTCTTGGAT
ATATCCGTGTACACCCTGATAATCTCGCCGCTGATAGTAAGAGCTCGCAA
ACGAAACCTGCGTCTCAGGAAGAGGCAACGACGTGAGAATGAAAACAACG
CAGCGTCTCAGCAAGGCTAG

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+

>Gcaud8363.t1 ID=Gcaud8363.t1|Name=Gcaud8363.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1920bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:13671..15590+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCCTCAGAACGAGAAGTGCATCACAGCGAGACAATCCAGAAGA
TGAGCACCTTGAAAGCCGACTAAACGCAAATTTCAAAGAACTTAGCCCCG
ACGATGTAGATGGGTTCTACTTTGCCATTGAAAACTCCGTTGAAGAGCTT
GACACCCGAGTGGAGGCTGCACGGCAAGCAACAGAGCGAGGAACGCAGGA
TGCTGACGACTTCTATGCCAATGACCTACCTCCAGCCTTTTTCGTTGCTG
AGCAAGAGAGCCATATGTTCACGGCGGCTGAAGTAAACAAAGCGTTGCAT
AGAGAAGATACTGAATTCATGAGACGTTCATCGCTTGTTCGCAGAGCCTC
TTCATTTCGCGCCAAGGACGAAGCACGGCCGATACCCAGCGGAATTTCAA
CACAAGAACCCAGTCAACGTGAAAATGGACGATCAAAGTCTCTCCTGGGC
ATTTATGGGTCTCGCACATCGCCATTTAAGTGGAGTCTTTCAAACTATCT
CCAATCTGTCGCCAGTACAAGGGAAAAAAGAATTATAGCCGTATCGGCAT
GGTTGTTGGCTCTGATTGGTCTCATCATTTCGTTGGCTTTCGTGACGAAA
GACTTTTTGAAGAGTAGAGAAGAATTGGCAAGCACAATTGGGTTCGAGAA
AACCGACTTGGTTGATCTACCAACTCTACATTTCTGCACAACTGGTACTC
AACTACCTCCTTTCTCACAACTTCCAAATGGACCGTATCAAGGGCAACCT
TTGGTATGGCTTGATACCATCCGAGGAACAAGTTCGAATGCGAGCTTTCT
GTATCCAGAGACAAAATCATTACCGCAGTTGAGGGTGGAGTCTTTCACAG
CGGCTGGCAGCCGATGCATTGCTTTAAATCAAATGGACACAGCACAGTTT
GAGTTAGAAAACACAAAACCGCCATCATGCTTTCACTGTTTAACAATAGA
GAGAGACAGCCTATTTCGGCTCAAAGAAAGAGACGCGACGAGTACTGGAG
CATTCTCGAACAAGTTCATTGTGCGGCTCTCTCAAAATACGTTAGTGCCG
AGGTGTAGAAAGCTTTCGTTCGGTTTACCGCTCTTTCTGACTGACTTTTT
TAGAGAGGTGTTTGTGCACCATAGCTTGGACTTGAAGCTCCGTGGAATCA
TGGATTACGGGGGGTATGATCCGCAAAATGAGGCGCAGAGCTACATCCTG
TGGCCAAGATATCGAAGGGGATTTCAAAACAAAACTACGGACATTAGAAT
GGTAGACCAGTCAGACATGTTCTGCAATGTGTACATGTTTTCAGGATACT
TTTATCCGTCCACTTCTGCTGAGATTCGTTATAGATTCAACAGTGAAAGC
TTTACGTGGGAACGAAGAGGGACCGGGCCGTATTATCCCAAAGATTTTCG
TTCGGTTTCAAATGAGCATGCGGGACTCAGCACGCAAAGCATGAGTACAA
CAATCGGCGAAGAACTCCTAGAAGACAAGGCGTTATACCCAGGTCAGCAT
TTGTTCGTCATGACAAACTATTCTGAAGACGGAGTGAATGAGTTGCTAGG
AGTAGTTCCTGCTGAGAAGAAAGCATCGTTACAACTTGAACGAAATCTAA
TTCTGGGGAAGAACGAATCGTTTCGATCACACACGATTCTAGAAGAAGTT
CGAAGCGGTGACGTGAAGACAAAGGCAGACGTTTACGTGGTTGAGTTCAG
CATGTTGAGCTTTCTGACGAGAGTGGTGGGCAAACAACTCTCTGTTTCTT
GGTCGGCATTCATCGCGGACTTTTTTGGGTTGACATCATTGTTCTTGGAT
ATATCCGTGTACACCCTGATAATCTCGCCGCTGATAGTAAGAGCTCGCAA
ACGAAACCTGCGTCTCAGGAAGAGGCAACGACGTGAGAATGAAAACAACG
CAGCGTCTCAGCAAGGCTAG