Gcaud8362.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8362.t1
Unique Name	Gcaud8362.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:11239..13098 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8362	Gcaud8362	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 11239..13098 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8362.t1.stop1	Gcaud8362.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 11239..11241 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8362.t1.CDS1	Gcaud8362.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 11239..13098 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8362.t1.exon1	Gcaud8362.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 11239..13098 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8362.t1.start1	Gcaud8362.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 13096..13098 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8362.t1	Gcaud8362.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 11239..13098 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:11239..13098-
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:11239..13098-

mRNA sequence

>Gcaud8362.t1 ID=Gcaud8362.t1|Name=Gcaud8362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=620bp
MEKHEKEEVLDLVSKKLFLAEKDYNANNLELQSFKRVVNRLAKLGETRKQ
RFDDGEDVALLDEFLADNRMRLGHLLSNPPAEGEWCSIDFDAWAADIEND
IRAQDPLMLSFDSTDGGGFPKASSSRATEEIPTVSSKGGTLLAILKANGK
ISQKARNAETSAADQSFFYLTTVAWVFAVFGMMVTIGFLAADFWYAQKHV
AIHVEQSTRQPQELPAITICNFVPNIPTFSNYPSSEYPGLPIFGIQRLTR
HNPSTSSVVSDTTYPDILSTSSKSVVEDVFVSHDLSECDSTGGFDVKREM
TSLKSGNGLGLQNTEDEKRCFHCVRLGRKSRILLHPAENEEDGMLLPALN
IKLYRTKLFAACRTDYHRRNIMVVSLFVDEIQKYAEELGGHGVLDFNGED
KERAIGVDWYQEDSQRFFDFCCNVYFFSGFFYPSRDKADISYRFDGSTEE
RWVRTGSGPYYSAYTWRLNAPDISGPNRAAIEKDFFTSDALELYVEEAES
VNATAAVSPHTKVSAIEAAQKSLYRFRKVLNQGKTEYEIIRSTSESQELG
QRAVDLYNVHFDFDSFETETIITTPTMTWPEFVIDVFEFIGLFTGICIFT
LIVAPAHSLVYPTSDTEQK*

spliced messenger RNA

>Gcaud8362.t1 ID=Gcaud8362.t1|Name=Gcaud8362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:11239..13098- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAACATGAGAAAGAAGAAGTATTGGATCTTGTTTCGAAGAAACT
GTTCTTGGCGGAAAAAGATTACAACGCTAATAACCTGGAGTTACAGAGCT
TCAAGAGAGTTGTGAATAGGTTGGCTAAGCTTGGGGAGACTCGAAAGCAG
AGGTTCGACGATGGAGAAGATGTTGCGTTACTCGATGAGTTTCTGGCTGA
CAATCGAATGCGCCTGGGGCACTTGCTCTCGAATCCTCCAGCAGAAGGTG
AATGGTGCAGTATTGACTTCGATGCATGGGCGGCAGATATCGAGAACGAC
ATAAGAGCGCAAGATCCTTTGATGTTGTCATTCGACTCTACCGATGGAGG
GGGATTTCCGAAGGCCAGCTCATCGCGCGCTACTGAAGAAATTCCAACAG
TATCTAGTAAAGGCGGAACGCTCCTTGCCATTCTTAAAGCCAACGGAAAA
ATCTCCCAGAAGGCCCGGAACGCAGAAACTTCTGCTGCTGACCAGAGTTT
CTTTTATCTGACAACTGTGGCCTGGGTCTTCGCGGTTTTTGGAATGATGG
TAACCATCGGATTTCTTGCTGCAGACTTCTGGTACGCTCAGAAACACGTT
GCAATACATGTAGAACAATCGACGCGACAACCCCAAGAGCTTCCGGCCAT
AACAATATGCAATTTCGTTCCCAACATACCGACCTTCTCAAACTATCCCT
CTTCGGAGTATCCTGGATTGCCGATTTTTGGAATTCAACGACTCACGCGA
CACAATCCATCTACCTCTTCAGTGGTCTCGGATACAACATATCCCGACAT
TTTGTCTACTTCATCAAAATCGGTAGTGGAAGATGTATTTGTTTCTCATG
ATTTATCCGAGTGTGATAGCACTGGGGGTTTCGATGTCAAACGAGAAATG
ACGAGTTTGAAATCAGGCAACGGTCTTGGTCTTCAGAACACTGAGGACGA
GAAACGATGCTTTCATTGTGTACGGTTGGGACGTAAATCAAGAATTTTAC
TCCACCCTGCCGAAAATGAGGAAGATGGTATGTTGCTGCCAGCGCTAAAT
ATAAAACTGTACCGAACAAAGCTCTTTGCAGCCTGTCGGACAGATTACCA
TAGGAGAAATATCATGGTCGTTTCCCTTTTTGTGGATGAGATTCAAAAGT
ACGCCGAAGAACTGGGTGGACACGGGGTCCTTGACTTCAACGGTGAGGAT
AAAGAGAGAGCTATTGGAGTTGATTGGTATCAGGAGGATAGCCAACGTTT
TTTTGATTTCTGCTGCAACGTCTACTTCTTCTCGGGTTTCTTCTATCCTT
CTCGGGACAAAGCGGACATCTCTTATCGGTTCGATGGAAGCACTGAAGAG
CGTTGGGTGAGGACAGGATCTGGACCATATTATTCTGCATACACATGGAG
ACTTAACGCTCCTGATATATCCGGTCCAAACCGTGCGGCAATCGAAAAAG
ACTTCTTTACATCCGATGCTCTTGAACTTTACGTTGAAGAAGCAGAAAGC
GTCAATGCTACAGCAGCTGTATCCCCTCACACAAAGGTATCCGCAATTGA
AGCCGCACAGAAGAGTCTGTATAGGTTTAGAAAGGTACTGAATCAGGGCA
AGACTGAGTACGAAATCATACGAAGCACATCAGAGTCGCAAGAACTTGGG
CAGAGGGCAGTAGATCTATACAATGTTCATTTTGACTTCGATTCTTTTGA
GACGGAAACGATCATCACAACTCCGACAATGACATGGCCAGAATTCGTAA
TCGATGTGTTCGAGTTCATTGGACTGTTTACCGGAATATGTATATTCACG
CTAATTGTTGCCCCTGCTCATTCCCTCGTGTACCCAACGTCGGACACTGA
ACAAAAGTGA

protein sequence of Gcaud8362.t1

>Gcaud8362.t1 ID=Gcaud8362.t1|Name=Gcaud8362.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=620bp
MEKHEKEEVLDLVSKKLFLAEKDYNANNLELQSFKRVVNRLAKLGETRKQ
RFDDGEDVALLDEFLADNRMRLGHLLSNPPAEGEWCSIDFDAWAADIEND
IRAQDPLMLSFDSTDGGGFPKASSSRATEEIPTVSSKGGTLLAILKANGK
ISQKARNAETSAADQSFFYLTTVAWVFAVFGMMVTIGFLAADFWYAQKHV
AIHVEQSTRQPQELPAITICNFVPNIPTFSNYPSSEYPGLPIFGIQRLTR
HNPSTSSVVSDTTYPDILSTSSKSVVEDVFVSHDLSECDSTGGFDVKREM
TSLKSGNGLGLQNTEDEKRCFHCVRLGRKSRILLHPAENEEDGMLLPALN
IKLYRTKLFAACRTDYHRRNIMVVSLFVDEIQKYAEELGGHGVLDFNGED
KERAIGVDWYQEDSQRFFDFCCNVYFFSGFFYPSRDKADISYRFDGSTEE
RWVRTGSGPYYSAYTWRLNAPDISGPNRAAIEKDFFTSDALELYVEEAES
VNATAAVSPHTKVSAIEAAQKSLYRFRKVLNQGKTEYEIIRSTSESQELG
QRAVDLYNVHFDFDSFETETIITTPTMTWPEFVIDVFEFIGLFTGICIFT
LIVAPAHSLVYPTSDTEQK*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:11239..13098-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8362.t1 ID=Gcaud8362.t1|Name=Gcaud8362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:11239..13098- (Gracilaria caudata M_176_S67 male)
ATGGAGAAACATGAGAAAGAAGAAGTATTGGATCTTGTTTCGAAGAAACT
GTTCTTGGCGGAAAAAGATTACAACGCTAATAACCTGGAGTTACAGAGCT
TCAAGAGAGTTGTGAATAGGTTGGCTAAGCTTGGGGAGACTCGAAAGCAG
AGGTTCGACGATGGAGAAGATGTTGCGTTACTCGATGAGTTTCTGGCTGA
CAATCGAATGCGCCTGGGGCACTTGCTCTCGAATCCTCCAGCAGAAGGTG
AATGGTGCAGTATTGACTTCGATGCATGGGCGGCAGATATCGAGAACGAC
ATAAGAGCGCAAGATCCTTTGATGTTGTCATTCGACTCTACCGATGGAGG
GGGATTTCCGAAGGCCAGCTCATCGCGCGCTACTGAAGAAATTCCAACAG
TATCTAGTAAAGGCGGAACGCTCCTTGCCATTCTTAAAGCCAACGGAAAA
ATCTCCCAGAAGGCCCGGAACGCAGAAACTTCTGCTGCTGACCAGAGTTT
CTTTTATCTGACAACTGTGGCCTGGGTCTTCGCGGTTTTTGGAATGATGG
TAACCATCGGATTTCTTGCTGCAGACTTCTGGTACGCTCAGAAACACGTT
GCAATACATGTAGAACAATCGACGCGACAACCCCAAGAGCTTCCGGCCAT
AACAATATGCAATTTCGTTCCCAACATACCGACCTTCTCAAACTATCCCT
CTTCGGAGTATCCTGGATTGCCGATTTTTGGAATTCAACGACTCACGCGA
CACAATCCATCTACCTCTTCAGTGGTCTCGGATACAACATATCCCGACAT
TTTGTCTACTTCATCAAAATCGGTAGTGGAAGATGTATTTGTTTCTCATG
ATTTATCCGAGTGTGATAGCACTGGGGGTTTCGATGTCAAACGAGAAATG
ACGAGTTTGAAATCAGGCAACGGTCTTGGTCTTCAGAACACTGAGGACGA
GAAACGATGCTTTCATTGTGTACGGTTGGGACGTAAATCAAGAATTTTAC
TCCACCCTGCCGAAAATGAGGAAGATGGTATGTTGCTGCCAGCGCTAAAT
ATAAAACTGTACCGAACAAAGCTCTTTGCAGCCTGTCGGACAGATTACCA
TAGGAGAAATATCATGGTCGTTTCCCTTTTTGTGGATGAGATTCAAAAGT
ACGCCGAAGAACTGGGTGGACACGGGGTCCTTGACTTCAACGGTGAGGAT
AAAGAGAGAGCTATTGGAGTTGATTGGTATCAGGAGGATAGCCAACGTTT
TTTTGATTTCTGCTGCAACGTCTACTTCTTCTCGGGTTTCTTCTATCCTT
CTCGGGACAAAGCGGACATCTCTTATCGGTTCGATGGAAGCACTGAAGAG
CGTTGGGTGAGGACAGGATCTGGACCATATTATTCTGCATACACATGGAG
ACTTAACGCTCCTGATATATCCGGTCCAAACCGTGCGGCAATCGAAAAAG
ACTTCTTTACATCCGATGCTCTTGAACTTTACGTTGAAGAAGCAGAAAGC
GTCAATGCTACAGCAGCTGTATCCCCTCACACAAAGGTATCCGCAATTGA
AGCCGCACAGAAGAGTCTGTATAGGTTTAGAAAGGTACTGAATCAGGGCA
AGACTGAGTACGAAATCATACGAAGCACATCAGAGTCGCAAGAACTTGGG
CAGAGGGCAGTAGATCTATACAATGTTCATTTTGACTTCGATTCTTTTGA
GACGGAAACGATCATCACAACTCCGACAATGACATGGCCAGAATTCGTAA
TCGATGTGTTCGAGTTCATTGGACTGTTTACCGGAATATGTATATTCACG
CTAATTGTTGCCCCTGCTCATTCCCTCGTGTACCCAACGTCGGACACTGA
ACAAAAGTGA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:11239..13098-

>Gcaud8362.t1 ID=Gcaud8362.t1|Name=Gcaud8362.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1860bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:11239..13098- (Gracilaria caudata M_176_S67 male)
ATGGAGAAACATGAGAAAGAAGAAGTATTGGATCTTGTTTCGAAGAAACT
GTTCTTGGCGGAAAAAGATTACAACGCTAATAACCTGGAGTTACAGAGCT
TCAAGAGAGTTGTGAATAGGTTGGCTAAGCTTGGGGAGACTCGAAAGCAG
AGGTTCGACGATGGAGAAGATGTTGCGTTACTCGATGAGTTTCTGGCTGA
CAATCGAATGCGCCTGGGGCACTTGCTCTCGAATCCTCCAGCAGAAGGTG
AATGGTGCAGTATTGACTTCGATGCATGGGCGGCAGATATCGAGAACGAC
ATAAGAGCGCAAGATCCTTTGATGTTGTCATTCGACTCTACCGATGGAGG
GGGATTTCCGAAGGCCAGCTCATCGCGCGCTACTGAAGAAATTCCAACAG
TATCTAGTAAAGGCGGAACGCTCCTTGCCATTCTTAAAGCCAACGGAAAA
ATCTCCCAGAAGGCCCGGAACGCAGAAACTTCTGCTGCTGACCAGAGTTT
CTTTTATCTGACAACTGTGGCCTGGGTCTTCGCGGTTTTTGGAATGATGG
TAACCATCGGATTTCTTGCTGCAGACTTCTGGTACGCTCAGAAACACGTT
GCAATACATGTAGAACAATCGACGCGACAACCCCAAGAGCTTCCGGCCAT
AACAATATGCAATTTCGTTCCCAACATACCGACCTTCTCAAACTATCCCT
CTTCGGAGTATCCTGGATTGCCGATTTTTGGAATTCAACGACTCACGCGA
CACAATCCATCTACCTCTTCAGTGGTCTCGGATACAACATATCCCGACAT
TTTGTCTACTTCATCAAAATCGGTAGTGGAAGATGTATTTGTTTCTCATG
ATTTATCCGAGTGTGATAGCACTGGGGGTTTCGATGTCAAACGAGAAATG
ACGAGTTTGAAATCAGGCAACGGTCTTGGTCTTCAGAACACTGAGGACGA
GAAACGATGCTTTCATTGTGTACGGTTGGGACGTAAATCAAGAATTTTAC
TCCACCCTGCCGAAAATGAGGAAGATGGTATGTTGCTGCCAGCGCTAAAT
ATAAAACTGTACCGAACAAAGCTCTTTGCAGCCTGTCGGACAGATTACCA
TAGGAGAAATATCATGGTCGTTTCCCTTTTTGTGGATGAGATTCAAAAGT
ACGCCGAAGAACTGGGTGGACACGGGGTCCTTGACTTCAACGGTGAGGAT
AAAGAGAGAGCTATTGGAGTTGATTGGTATCAGGAGGATAGCCAACGTTT
TTTTGATTTCTGCTGCAACGTCTACTTCTTCTCGGGTTTCTTCTATCCTT
CTCGGGACAAAGCGGACATCTCTTATCGGTTCGATGGAAGCACTGAAGAG
CGTTGGGTGAGGACAGGATCTGGACCATATTATTCTGCATACACATGGAG
ACTTAACGCTCCTGATATATCCGGTCCAAACCGTGCGGCAATCGAAAAAG
ACTTCTTTACATCCGATGCTCTTGAACTTTACGTTGAAGAAGCAGAAAGC
GTCAATGCTACAGCAGCTGTATCCCCTCACACAAAGGTATCCGCAATTGA
AGCCGCACAGAAGAGTCTGTATAGGTTTAGAAAGGTACTGAATCAGGGCA
AGACTGAGTACGAAATCATACGAAGCACATCAGAGTCGCAAGAACTTGGG
CAGAGGGCAGTAGATCTATACAATGTTCATTTTGACTTCGATTCTTTTGA
GACGGAAACGATCATCACAACTCCGACAATGACATGGCCAGAATTCGTAA
TCGATGTGTTCGAGTTCATTGGACTGTTTACCGGAATATGTATATTCACG
CTAATTGTTGCCCCTGCTCATTCCCTCGTGTACCCAACGTCGGACACTGA
ACAAAAGTGA