Gcaud9164.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9164.t1
Unique NameGcaud9164.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length378
Homology
BLAST of Gcaud9164.t1 vs. uniprot
Match: A0A2V3IUI5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUI5_9FLOR)

HSP 1 Score: 427 bits (1099), Expect = 1.850e-146
Identity = 259/364 (71.15%), Postives = 301/364 (82.69%), Query Frame = 0
Query:   14 VTTAVSCLLFSSVAAETSETEKSDVQKFVSALVADSQTVFFFELFVASLVVAYVIGFVYGSYVNLNLARKVAGILREILDHQFVEFGTKEGKTLLKDGPSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTTPQRDRIVFYMPITTDVSMDPLTLFIVKRKELSRLRDVQEGEALKSVERFAGEVMDVNGLPGDFITMTEHSDIITTLLPERIRTVITRQSKNLLSVHVTENGAKWDSQSNASKQLVRVEFVLPWQQKHLPQVLEDMSQIAIHLVDTVSETKMSAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKTVRK 377
            +T  +  LL ++ AAE +E+       F+SALVAD QTV FFELFVASLVV YVI F+YGS+ NLNLAR VA  LR IL++QFV FGT+EGKTLLKDG S++WYHATGRR TSGLTVF+DLAKRMD+FSYTS  MT+P+RDR+VFY+PIT DVSMDPLTLFIVKRKEL RLR+V+EG AL+SVERFAG+V+DVNG P D +TMTEHSDI T LLPERIR +I RQ++NL+S+HVTENGAKWD+Q + SK+LVRVEFVLP Q+ +LP VLEDM QIAIH VD V++TKMSA AR             XXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMS +KQ+KYE KKRKKELNARM+K+ RK
Sbjct:    1 MTGIILALLSTTAAAERTES-------FISALVADKQTVLFFELFVASLVVIYVICFLYGSHQNLNLARAVAHNLRNILEYQFVSFGTEEGKTLLKDGQSYFWYHATGRRNTSGLTVFLDLAKRMDIFSYTSGLMTSPERDRVVFYLPITNDVSMDPLTLFIVKRKELDRLRNVEEGLALESVERFAGQVIDVNGFPSDLVTMTEHSDISTALLPERIRNMIARQARNLISIHVTENGAKWDAQCSVSKRLVRVEFVLPRQKSNLPDVLEDMCQIAIHFVDAVADTKMSATARKKALELRRRAQLEXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSGDKQVKYEAKKRKKELNARMKKSARK 357          
BLAST of Gcaud9164.t1 vs. uniprot
Match: R7QHT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHT1_CHOCR)

HSP 1 Score: 301 bits (772), Expect = 1.130e-96
Identity = 179/335 (53.43%), Postives = 235/335 (70.15%), Query Frame = 0
Query:   43 SALVADSQTVFFFELFVASLVVAYVIGFVYGSYVNLNLARKVAGILREILDHQFVEFGTKEGKTLLKDGPSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTTPQRDRIVFYMPITTDVSMDPLTLFIVKRKELSRLRDVQEGEALKSVERFAGEVMDVNGLPGDFITMTEHSDIITTLLPERIRTVITRQSKNLLSVHVTENGAKWDSQSNASKQLVRVEFVLPWQQKHLPQVLEDMSQIAIHLVDTVSETKMSAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKTVRK 377
            S L+AD  T+  FE+ +A+LVVA+ I F+YGS  N +LARKVA ++ ++L  +F   G    + LLKDG S+YWY+ATGRRYTSGLTVFMDLAKRMD+F+YTS   +TPQ+DRIVFY+P+T D  M+P++L +V++KEL RLR+++EG  L+  E  A  V+++NG+P DF+ MTEHSD+ T LLPERIRT+I    K + S+HV ENGA WDSQ   +K+L+RV+F LP +   LP VL+ M QI++HLVD   E +++  ++                    XXXXXXXXXXXXXXXXXXX         Q+KYEEKKRKKE+NARMRK  RK
Sbjct:   45 SPLIADENTMQLFEMAMAALVVAFAITFMYGSITNRSLARKVAKLMEDLLTLEFAHSGVSSTEKLLKDGESYYWYYATGRRYTSGLTVFMDLAKRMDVFAYTSGLFSTPQKDRIVFYLPLTDDFDMEPMSLLLVRKKELFRLRELKEGAPLREAETVAANVLELNGIPVDFVCMTEHSDVATALLPERIRTLIQENGKYINSIHVAENGASWDSQCTLTKRLIRVDFSLPGKSSLLPAVLQAMLQISMHLVDAAGEVRLTPVSKKKAIELRKKAVQEAERHIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKYEEKKRKKEINARMRKATRK 379          
The following BLAST results are available for this feature:
BLAST of Gcaud9164.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUI5_9FLOR1.850e-14671.15Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHT1_CHOCR1.130e-9653.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 302..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..377
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..366
NoneNo IPR availablePANTHERPTHR12883:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN 47coord: 46..374
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..377
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
IPR012879PAT complex subunit CCDC47PFAMPF07946DUF1682coord: 53..367
e-value: 1.1E-53
score: 182.5
IPR012879PAT complex subunit CCDC47PANTHERPTHR12883ADIPOCYTE-SPECIFIC PROTEIN 4-RELATEDcoord: 46..374

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1047_length_14702_cov_4.831086contigNODE_1047_length_14702_cov_4.831086:11443..12576 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9164.t1Gcaud9164.t1Gracilaria caudata M_176_S67 malemRNANODE_1047_length_14702_cov_4.831086 11443..12576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MKIFNHDARHCWQVTTAVSCLLFSSVAAETSETEKSDVQKFVSALVADSQ
TVFFFELFVASLVVAYVIGFVYGSYVNLNLARKVAGILREILDHQFVEFG
TKEGKTLLKDGPSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTT
PQRDRIVFYMPITTDVSMDPLTLFIVKRKELSRLRDVQEGEALKSVERFA
GEVMDVNGLPGDFITMTEHSDIITTLLPERIRTVITRQSKNLLSVHVTEN
GAKWDSQSNASKQLVRVEFVLPWQQKHLPQVLEDMSQIAIHLVDTVSETK
MSAAARKKAVELRRRAQQEEDKKLQKARAEEAAARRLAKKKEEEEAVGKM
SREKQIKYEEKKRKKELNARMRKTVRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012879CCDC47