Gcaud8548.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8548.t1
Unique Name	Gcaud8548.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	588

Homology

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BLAST of Gcaud8548.t1 vs. uniprot
Match: A0A2V3IHE7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHE7_9FLOR)

HSP 1 Score: 549 bits (1415), Expect = 1.210e-187
Identity = 300/578 (51.90%), Postives = 402/578 (69.55%), Query Frame = 0

Query:   19 SEDKRRRNVLSHQREVLKIYVRLALQKAAVKWLKPQARSRTPIERG---DEDIAQEWLKEIYREEKQKQRTIRKESEERMITRALESLELNREKLCEETLSLFARRLLKIVPELPKLFNMVRLSNKLSIKQVKYGEMETARAMAWCAYGNKTPSPEILSRAYDLVEFESGRRVQSKPRKQERKDKRILRKRNVTVDSMDEILAMSLVELADRAMYCVEGTMLYSDQSTAVCQLDAFVAEITRCAIHLNPDLREIVRRCIDEKMDKGKLIFKLERDEKLISIIWGDKERLKEWYQTVILLRRQGVTNLLLCIMHCDYGQFEVLGLRYTFGRGKLKEQHSQPVPWYRSEAMELDKEFQN----FRTSVYMKDGTLMKKEPRVQVMVRILLLVVYAVTAIVATVVVSVKGVTDGLVGYLEVISLVILGLIGTLVSMWQCMSSQTRPIRNAFHGCKEVHCIEDLLDVSY--RRVFRKNTDDEKRLERFRMWLAGNGYGENLPGIEVFFSGKDRYPLYDPKGIRVDYLSKVTLCDGYFLVRRPDEKAWLLRRHGDNLRVEDVCDGHAVIACLSMRSTMRVGGD 587
            +E   ++ V+ HQ++ L  YV LAL+KA V   +  +R   P +     DE++A+ WL+ IYR E+ K R  R+ESEER I  AL  L+       + TL   A+ ++K+VPELP L++M+  ++ L ++ VKYG+ ETARA+AW AYG   PSPEILSRAYDLV ++SG  +QSKP K    D RILRK    + SMD+ILA+SLVEL DR ++C++ T LYSD+ T +C L  FVAEI RCA  L P+LRE V       +D+ KL+ K+ER+E LI ++WGD++R+ +WY+  IL  R G+TN L  +MH DYGQFE+ GLRY FGR K  ++H Q +P+YR  A++++K        FR SVYMKDG L+++EP +Q   R+LL+++Y +  I  T+VV+V        GY+EV+SLV++G+IG  V++W+C+SSQ+RPIR AFHG KE H IEDL+ VSY  R   RK+  +   +ERFR WLAG G+G NLPGI+VFF+GKD+YPLYDPKGIRVD LS+VTLCDGY+LVRRPDEKA  L RHGDNL V++  DGHA+I  +S R  MRVGGD
Sbjct:   19 AESVSKQRVIEHQKDGLTRYVLLALEKAVVN--ETGSRRIEPDDANNETDEEVAKLWLESIYRTERMKSRIGREESEERRIIEALGRLDR------DTTLRKRAKTVIKVVPELPSLYSMLNKASDLFVEHVKYGDYETARALAWYAYGPTMPSPEILSRAYDLVAYDSGLILQSKPMKG-CPDLRILRK-PTELRSMDDILALSLVELTDRTIHCLKNTQLYSDRKTLICSLGEFVAEIARCAFSLVPELRERVIESFVNYLDRDKLLLKMERNETLIKLLWGDEKRMSKWYENHILKTRSGLTNFLFGMMHSDYGQFEINGLRYLFGRWKYADEHEQAIPYYRRNALKIEKWLMKKDPYFRESVYMKDGVLVRREPPLQRACRLLLIILYVMIGIALTLVVTVNSTLRDAAGYIEVVSLVLVGMIGVGVTLWECLSSQSRPIRYAFHGFKEAHTIEDLMSVSYVDRIRRRKSKFEGPEIERFRKWLAGIGFGNNLPGIDVFFTGKDKYPLYDPKGIRVDDLSEVTLCDGYYLVRRPDEKARELLRHGDNLHVDNFVDGHAIIVSMSNRCEMRVGGD 586

The following BLAST results are available for this feature:

BLAST of Gcaud8548.t1 vs. uniprot

BLAST of Gcaud8548.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IHE7_9FLOR	1.210e-187	51.90	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 415..425
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 448..587
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 393..414
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..392
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 426..447
None	No IPR available	TMHMM	TMhelix		coord: 394..416
None	No IPR available	TMHMM	TMhelix		coord: 423..445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:7913..9676 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1	Gcaud8548.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_162_length_42220_cov_4.454604 7913..9676 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=588bp
MTHPKRTKRPRKAAARETSEDKRRRNVLSHQREVLKIYVRLALQKAAVKW
LKPQARSRTPIERGDEDIAQEWLKEIYREEKQKQRTIRKESEERMITRAL
ESLELNREKLCEETLSLFARRLLKIVPELPKLFNMVRLSNKLSIKQVKYG
EMETARAMAWCAYGNKTPSPEILSRAYDLVEFESGRRVQSKPRKQERKDK
RILRKRNVTVDSMDEILAMSLVELADRAMYCVEGTMLYSDQSTAVCQLDA
FVAEITRCAIHLNPDLREIVRRCIDEKMDKGKLIFKLERDEKLISIIWGD
KERLKEWYQTVILLRRQGVTNLLLCIMHCDYGQFEVLGLRYTFGRGKLKE
QHSQPVPWYRSEAMELDKEFQNFRTSVYMKDGTLMKKEPRVQVMVRILLL
VVYAVTAIVATVVVSVKGVTDGLVGYLEVISLVILGLIGTLVSMWQCMSS
QTRPIRNAFHGCKEVHCIEDLLDVSYRRVFRKNTDDEKRLERFRMWLAGN
GYGENLPGIEVFFSGKDRYPLYDPKGIRVDYLSKVTLCDGYFLVRRPDEK
AWLLRRHGDNLRVEDVCDGHAVIACLSMRSTMRVGGD*