Gcaud9164.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9164.t1
Unique Name	Gcaud9164.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1047_length_14702_cov_4.831086	contig	NODE_1047_length_14702_cov_4.831086:11443..12576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3659.XP_004166428.1
PFAMs	DUF1682
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872
Evalue	7.11e-12
EggNOG OGs	KOG2357@1\|root,KOG2357@2759\|Eukaryota,37HXB@33090\|Viridiplantae,3GCK9@35493\|Streptophyta,4JMC9@91835\|fabids
Description	At5g49945-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9164	Gcaud9164	Gracilaria caudata M_176_S67 male	gene	NODE_1047_length_14702_cov_4.831086 11443..12576 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9164.t1.stop1	Gcaud9164.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1047_length_14702_cov_4.831086 11443..11445 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9164.t1.CDS1	Gcaud9164.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 11443..12576 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9164.t1.exon1	Gcaud9164.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 11443..12576 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9164.t1.start1	Gcaud9164.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1047_length_14702_cov_4.831086 12574..12576 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9164.t1	Gcaud9164.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1047_length_14702_cov_4.831086 11443..12576 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576-
coding sequence from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576-

mRNA sequence

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp
MKIFNHDARHCWQVTTAVSCLLFSSVAAETSETEKSDVQKFVSALVADSQ
TVFFFELFVASLVVAYVIGFVYGSYVNLNLARKVAGILREILDHQFVEFG
TKEGKTLLKDGPSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTT
PQRDRIVFYMPITTDVSMDPLTLFIVKRKELSRLRDVQEGEALKSVERFA
GEVMDVNGLPGDFITMTEHSDIITTLLPERIRTVITRQSKNLLSVHVTEN
GAKWDSQSNASKQLVRVEFVLPWQQKHLPQVLEDMSQIAIHLVDTVSETK
MSAAARKKAVELRRRAQQEEDKKLQKARAEEAAARRLAKKKEEEEAVGKM
SREKQIKYEEKKRKKELNARMRKTVRK*

spliced messenger RNA

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATCTTCAATCATGACGCTCGCCATTGCTGGCAAGTAACGACTGC
TGTTAGTTGCTTGCTGTTTTCCTCCGTCGCCGCAGAAACATCTGAGACTG
AAAAGTCCGATGTTCAGAAGTTCGTATCTGCACTAGTTGCAGACTCTCAA
ACTGTCTTTTTCTTTGAGCTCTTCGTGGCGTCTCTTGTCGTCGCTTATGT
CATTGGTTTCGTGTATGGAAGTTACGTGAATCTGAACCTTGCGCGCAAGG
TAGCTGGCATTTTGCGAGAGATTCTGGATCACCAATTTGTTGAGTTTGGA
ACAAAGGAAGGCAAGACGCTTCTCAAAGACGGGCCGTCATTTTACTGGTA
CCACGCAACCGGTCGGCGATATACATCTGGTCTAACCGTATTTATGGATT
TGGCCAAGCGCATGGATTTATTCTCTTACACTTCCAGCTTCATGACAACT
CCGCAGCGAGACCGCATTGTGTTTTACATGCCGATCACGACAGACGTGTC
TATGGATCCGCTAACATTGTTCATCGTGAAGCGGAAAGAGCTGTCTCGAT
TGAGAGACGTTCAAGAAGGAGAAGCTCTAAAATCAGTAGAGCGATTTGCC
GGAGAGGTGATGGATGTGAACGGTCTTCCAGGTGATTTCATCACAATGAC
TGAGCACAGTGACATCATAACAACGTTGCTGCCAGAAAGAATTCGAACAG
TCATCACTCGTCAATCAAAGAATTTGCTCTCTGTTCACGTGACGGAGAAT
GGCGCAAAATGGGATTCACAGAGCAACGCTTCTAAGCAACTTGTCCGTGT
TGAGTTCGTTCTGCCTTGGCAGCAGAAGCATCTGCCTCAAGTACTTGAAG
ATATGTCTCAGATCGCAATTCATTTGGTAGATACAGTATCAGAAACCAAA
ATGTCAGCAGCAGCACGCAAGAAAGCTGTAGAACTGCGCAGAAGGGCACA
ACAAGAAGAAGATAAGAAGCTTCAGAAGGCTAGAGCTGAAGAAGCGGCTG
CTCGTAGACTAGCGAAGAAAAAAGAAGAGGAAGAGGCGGTCGGGAAAATG
TCGCGTGAAAAGCAGATCAAGTATGAAGAGAAGAAGCGAAAGAAGGAACT
CAATGCCCGTATGAGAAAGACCGTGAGAAAATAA

protein sequence of Gcaud9164.t1

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MKIFNHDARHCWQVTTAVSCLLFSSVAAETSETEKSDVQKFVSALVADSQ
TVFFFELFVASLVVAYVIGFVYGSYVNLNLARKVAGILREILDHQFVEFG
TKEGKTLLKDGPSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTT
PQRDRIVFYMPITTDVSMDPLTLFIVKRKELSRLRDVQEGEALKSVERFA
GEVMDVNGLPGDFITMTEHSDIITTLLPERIRTVITRQSKNLLSVHVTEN
GAKWDSQSNASKQLVRVEFVLPWQQKHLPQVLEDMSQIAIHLVDTVSETK
MSAAARKKAVELRRRAQQEEDKKLQKARAEEAAARRLAKKKEEEEAVGKM
SREKQIKYEEKKRKKELNARMRKTVRK*

mRNA from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576- (Gracilaria caudata M_176_S67 male)
ATGAAAATCTTCAATCATGACGCTCGCCATTGCTGGCAAGTAACGACTGC
TGTTAGTTGCTTGCTGTTTTCCTCCGTCGCCGCAGAAACATCTGAGACTG
AAAAGTCCGATGTTCAGAAGTTCGTATCTGCACTAGTTGCAGACTCTCAA
ACTGTCTTTTTCTTTGAGCTCTTCGTGGCGTCTCTTGTCGTCGCTTATGT
CATTGGTTTCGTGTATGGAAGTTACGTGAATCTGAACCTTGCGCGCAAGG
TAGCTGGCATTTTGCGAGAGATTCTGGATCACCAATTTGTTGAGTTTGGA
ACAAAGGAAGGCAAGACGCTTCTCAAAGACGGGCCGTCATTTTACTGGTA
CCACGCAACCGGTCGGCGATATACATCTGGTCTAACCGTATTTATGGATT
TGGCCAAGCGCATGGATTTATTCTCTTACACTTCCAGCTTCATGACAACT
CCGCAGCGAGACCGCATTGTGTTTTACATGCCGATCACGACAGACGTGTC
TATGGATCCGCTAACATTGTTCATCGTGAAGCGGAAAGAGCTGTCTCGAT
TGAGAGACGTTCAAGAAGGAGAAGCTCTAAAATCAGTAGAGCGATTTGCC
GGAGAGGTGATGGATGTGAACGGTCTTCCAGGTGATTTCATCACAATGAC
TGAGCACAGTGACATCATAACAACGTTGCTGCCAGAAAGAATTCGAACAG
TCATCACTCGTCAATCAAAGAATTTGCTCTCTGTTCACGTGACGGAGAAT
GGCGCAAAATGGGATTCACAGAGCAACGCTTCTAAGCAACTTGTCCGTGT
TGAGTTCGTTCTGCCTTGGCAGCAGAAGCATCTGCCTCAAGTACTTGAAG
ATATGTCTCAGATCGCAATTCATTTGGTAGATACAGTATCAGAAACCAAA
ATGTCAGCAGCAGCACGCAAGAAAGCTGTAGAACTGCGCAGAAGGGCACA
ACAAGAAGAAGATAAGAAGCTTCAGAAGGCTAGAGCTGAAGAAGCGGCTG
CTCGTAGACTAGCGAAGAAAAAAGAAGAGGAAGAGGCGGTCGGGAAAATG
TCGCGTGAAAAGCAGATCAAGTATGAAGAGAAGAAGCGAAAGAAGGAACT
CAATGCCCGTATGAGAAAGACCGTGAGAAAATAA

Coding sequence (CDS) from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576-

>Gcaud9164.t1 ID=Gcaud9164.t1|Name=Gcaud9164.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1134bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:11443..12576- (Gracilaria caudata M_176_S67 male)
ATGAAAATCTTCAATCATGACGCTCGCCATTGCTGGCAAGTAACGACTGC
TGTTAGTTGCTTGCTGTTTTCCTCCGTCGCCGCAGAAACATCTGAGACTG
AAAAGTCCGATGTTCAGAAGTTCGTATCTGCACTAGTTGCAGACTCTCAA
ACTGTCTTTTTCTTTGAGCTCTTCGTGGCGTCTCTTGTCGTCGCTTATGT
CATTGGTTTCGTGTATGGAAGTTACGTGAATCTGAACCTTGCGCGCAAGG
TAGCTGGCATTTTGCGAGAGATTCTGGATCACCAATTTGTTGAGTTTGGA
ACAAAGGAAGGCAAGACGCTTCTCAAAGACGGGCCGTCATTTTACTGGTA
CCACGCAACCGGTCGGCGATATACATCTGGTCTAACCGTATTTATGGATT
TGGCCAAGCGCATGGATTTATTCTCTTACACTTCCAGCTTCATGACAACT
CCGCAGCGAGACCGCATTGTGTTTTACATGCCGATCACGACAGACGTGTC
TATGGATCCGCTAACATTGTTCATCGTGAAGCGGAAAGAGCTGTCTCGAT
TGAGAGACGTTCAAGAAGGAGAAGCTCTAAAATCAGTAGAGCGATTTGCC
GGAGAGGTGATGGATGTGAACGGTCTTCCAGGTGATTTCATCACAATGAC
TGAGCACAGTGACATCATAACAACGTTGCTGCCAGAAAGAATTCGAACAG
TCATCACTCGTCAATCAAAGAATTTGCTCTCTGTTCACGTGACGGAGAAT
GGCGCAAAATGGGATTCACAGAGCAACGCTTCTAAGCAACTTGTCCGTGT
TGAGTTCGTTCTGCCTTGGCAGCAGAAGCATCTGCCTCAAGTACTTGAAG
ATATGTCTCAGATCGCAATTCATTTGGTAGATACAGTATCAGAAACCAAA
ATGTCAGCAGCAGCACGCAAGAAAGCTGTAGAACTGCGCAGAAGGGCACA
ACAAGAAGAAGATAAGAAGCTTCAGAAGGCTAGAGCTGAAGAAGCGGCTG
CTCGTAGACTAGCGAAGAAAAAAGAAGAGGAAGAGGCGGTCGGGAAAATG
TCGCGTGAAAAGCAGATCAAGTATGAAGAGAAGAAGCGAAAGAAGGAACT
CAATGCCCGTATGAGAAAGACCGTGAGAAAATAA