Gcaud9161.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9161.t1
Unique NameGcaud9161.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length209
Homology
BLAST of Gcaud9161.t1 vs. uniprot
Match: A0A2V3IWD6_9FLOR (RING-type E3 ubiquitin transferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWD6_9FLOR)

HSP 1 Score: 352 bits (902), Expect = 1.110e-121
Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 0
Query:    1 MGEKEPISEHLARAQQRTQAASQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGVHHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVFIAVIITTF 208
            M     + EHL +A+Q + A S + +EKK+EN FECHVCL+APREPVVTPCGHLYCWPCL+RWLRM G+NAQCPVCK+AI+RSSVIPIYGRGGS+SRA+ EEG   VPPRPSGHREQP RGM GVPHFGVHH TFGR NPYGAGYEN+GLSAFGFFP+LFG+QIAYPHMNEPPREEP  N+QEDG PDIVAKIFLLLTVFIAVIITTF
Sbjct:    1 MATNNSVPEHLTQARQTSTATSSEVTEKKEENLFECHVCLEAPREPVVTPCGHLYCWPCLFRWLRMQGQNAQCPVCKAAISRSSVIPIYGRGGSSSRARNEEG---VPPRPSGHREQPPRGMPGVPHFGVHHPTFGRFNPYGAGYENVGLSAFGFFPNLFGMQIAYPHMNEPPREEPQQNEQEDGLPDIVAKIFLLLTVFIAVIITTF 205          
BLAST of Gcaud9161.t1 vs. uniprot
Match: R7QGZ6_CHOCR (RING-type E3 ubiquitin transferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGZ6_CHOCR)

HSP 1 Score: 225 bits (573), Expect = 3.520e-71
Identity = 110/196 (56.12%), Postives = 136/196 (69.39%), Query Frame = 0
Query:   18 TQAASQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEG--DNPVPPRPSGHREQPARGMQGVPH---FGVHHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVFIAVIITTF 208
            T A    +S    E+ FEC+VC D P  PVVTPCGHLYCW CLY+W+R   ++ QCPVCK+ +++ SVIPIYGRG +      E    +  VPPRPSGHR  PA   QG+     FG+ H  FGR+NPYGA Y+N+ LS FG FPSLFGLQIAYP +NEPPREE   N  +DG  ++VA++FLLL+VFI +IITTF
Sbjct:   42 TPAEPTGSSSPSPESAFECNVCFDVPTGPVVTPCGHLYCWLCLYKWMRQRADSPQCPVCKAGVDKRSVIPIYGRGRAEDSDPREHAAPEEDVPPRPSGHRATPAGQTQGMHPGNPFGMQHTPFGRINPYGANYDNVSLSTFGLFPSLFGLQIAYPQVNEPPREELPANP-DDGMSELVARVFLLLSVFIVIIITTF 236          
BLAST of Gcaud9161.t1 vs. uniprot
Match: A0A5J4YRT6_PORPP (RING-type E3 ubiquitin transferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRT6_PORPP)

HSP 1 Score: 134 bits (337), Expect = 7.470e-35
Identity = 66/164 (40.24%), Postives = 93/164 (56.71%), Query Frame = 0
Query:   19 QAASQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQ---------CPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPAR------GMQGVPHFGVHHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYP 167
            +A S   +  +  +PFEC++C D PR+PVVT CGHLYCWPCL+RW+ +   +           CPVCKS + +S+VIPIYGR  S ++   E     VPPRP G R +  +      G+   P+FGV +   GR + +   Y +   +AFG FP +FG  + YP
Sbjct:   77 EAGSAGDAPAETASPFECNICFDLPRDPVVTQCGHLYCWPCLFRWMNVGPSSGAARHPTAPTLCPVCKSVVQKSTVIPIYGRNSSENKDPRESPVEDVPPRPLGQRSEAPQVEARPAGINFPPYFGVPN---GRFSAHENAYGSFSFTAFGLFPQIFGFYMNYP 237          
BLAST of Gcaud9161.t1 vs. uniprot
Match: M2XYA1_GALSU (RING-type E3 ubiquitin transferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYA1_GALSU)

HSP 1 Score: 129 bits (324), Expect = 1.340e-33
Identity = 72/200 (36.00%), Postives = 100/200 (50.00%), Query Frame = 0
Query:   26 SEKKDENP-FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQ------------------PARGMQGVPHFG------VHHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREE---PHHNQQEDGFPDIVAKIFLLL 197
            SEK+  +  F+CH+C D+P +PVVTPCGHLYCW C+Y+W+  H +   CP+CKS+I +  +IPIYGR G        +    +P RPSG R +                  P     G P +       VHH+ FG  +          +SAFG FPSLFGLQ  YP    PP+     P    +E      V+++ L++
Sbjct:   43 SEKETHSSLFDCHICFDSPNDPVVTPCGHLYCWSCIYKWMAAHPDCPSCPLCKSSIEKDKIIPIYGRNGQDQVDPRTKVIPDIPARPSGQRTELPRSSSTSQSSGGGAFHSPHSPFYGSPFYPGPFSSPVHHSNFGPFS----------VSAFGPFPSLFGLQFTYP----PPQSTGSVPETMTEEQANQAFVSRLLLVM 228          
BLAST of Gcaud9161.t1 vs. uniprot
Match: A0A1Y1KVF0_PHOPY (RING-type E3 ubiquitin transferase n=3 Tax=Lampyridae TaxID=7049 RepID=A0A1Y1KVF0_PHOPY)

HSP 1 Score: 127 bits (319), Expect = 2.030e-33
Identity = 70/180 (38.89%), Postives = 96/180 (53.33%), Query Frame = 0
Query:   24 DASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGV----HHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            D  EKK++  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+AI++  V+P+YGRG +      E+    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S F    A P     P   P H +++      ++K+FL L V
Sbjct:   25 DKEEKKEDRTFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISKEKVVPLYGRGSTKQEDPREK----VPPRPAGQRTEPEGGST-FPGFGFGDTGFHMSFG-----------IGAFPFGFFTSTFNFGDARP--GAAPHGTPQHLEEQ-----YLSKLFLWLAV 181          
BLAST of Gcaud9161.t1 vs. uniprot
Match: R4WD90_RIPPE (RING-type E3 ubiquitin transferase n=2 Tax=Pentatomomorpha TaxID=33357 RepID=R4WD90_RIPPE)

HSP 1 Score: 127 bits (318), Expect = 2.100e-33
Identity = 72/174 (41.38%), Postives = 94/174 (54.02%), Query Frame = 0
Query:   27 EKKDENP-FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGV----HHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFL 195
            E+K+ENP FEC++CLD  ++ VV+ CGHL+CWPCL++WL        CPVCK+AI +  VIP+YGRG +    Q E+  N VPPRP+G R +P     G P FG      H +FG           +G   FGF  S F      PH   P    P     ED F   ++K+FL
Sbjct:   17 EEKEENPMFECNICLDTAKDAVVSMCGHLFCWPCLHQWLETRPTRQLCPVCKAAIGKDKVIPLYGRGSN----QHEDPRNKVPPRPAGQRTEPENNT-GFPGFGFGDGGFHMSFG-----------IGAFPFGFITSTFN-----PHDQRPSSHAPRGLPNEDEF---ISKMFL 166          
BLAST of Gcaud9161.t1 vs. uniprot
Match: D6X296_TRICA (RING-type E3 ubiquitin transferase n=2 Tax=Tribolium TaxID=7069 RepID=D6X296_TRICA)

HSP 1 Score: 126 bits (317), Expect = 4.050e-33
Identity = 70/173 (40.46%), Postives = 97/173 (56.07%), Query Frame = 0
Query:   27 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGVHHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            +KKD+  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+AI++  VIP+YGRG +      E+    VPPRP+G R +P  G    P FG     FG  N +   +  +G   FGFF S F    A P  +  PR    H +++      ++K+FL L V
Sbjct:   27 DKKDDRMFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVIPLYGRGSTKQEDPREK----VPPRPAGQRTEPEPGST-FPGFG-----FGGDNGFHMSF-GIGAFPFGFFTSTFNFGDARP--SPAPRGTQQHMEEQ-----FLSKLFLWLAV 181          
BLAST of Gcaud9161.t1 vs. uniprot
Match: A0A2J7PD34_9NEOP (RING-type E3 ubiquitin transferase n=2 Tax=Polyneoptera TaxID=33341 RepID=A0A2J7PD34_9NEOP)

HSP 1 Score: 126 bits (316), Expect = 4.320e-33
Identity = 73/194 (37.63%), Postives = 102/194 (52.58%), Query Frame = 0
Query:   11 LARAQQRTQAASQDASEK-KDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGV----HHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            +A A +   + S +  EK KDE   EC++CLDA R+ VV+ CGHL+CWPCL++WL        CPVCK+AI++  V+P+YGRG +      E+  N VPPRP G R +P     G P FG      H +FG           +G   FGFF S F      P  +  PR  P   +++      ++K+FL + V
Sbjct:    1 MAAANEPGSSKSSNGEEKEKDETMLECNICLDAARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVVPLYGRGSTKQ----EDPRNKVPPRPPGQRSEPENNS-GFPGFGFGDGGFHMSFG-----------IGAFPFGFFTSTFNF--GEPRPSAAPRGTPQFEEEQ-----FLSKVFLWVAV 171          
BLAST of Gcaud9161.t1 vs. uniprot
Match: UPI000626E6DB (E3 ubiquitin-protein ligase RNF185 isoform X1 n=3 Tax=Orussus abietinus TaxID=222816 RepID=UPI000626E6DB)

HSP 1 Score: 125 bits (315), Expect = 6.640e-33
Identity = 74/184 (40.22%), Postives = 101/184 (54.89%), Query Frame = 0
Query:   22 SQDASEKK--DENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGVH----HATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            S  AS++K  D+  FECH+CLD  ++ VV+ CGHL+CWPCL++WL        CPVCK+AI++  VIP+YGRG +      E+  N VPPRP+G R +P   + G P FG +    H +FG           +G   FGFF S F      P  +  PR  P +  + D F   ++KIF  L V
Sbjct:   14 SGSASDEKEGDDRMFECHICLDTAKDAVVSMCGHLFCWPCLHQWLETRPVRQVCPVCKAAISKEKVIPLYGRGATKQ----EDPRNNVPPRPAGQRSEPESNV-GFPGFGFNDGGFHMSFG-----------IGAFPFGFFTSTFNFGETRP--SAAPRGTPQY--ESDQF---LSKIFFFLAV 174          
BLAST of Gcaud9161.t1 vs. uniprot
Match: A0A1W4X226_AGRPL (RING-type E3 ubiquitin transferase n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4X226_AGRPL)

HSP 1 Score: 125 bits (315), Expect = 7.030e-33
Identity = 69/180 (38.33%), Postives = 97/180 (53.89%), Query Frame = 0
Query:   22 SQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQIEEGDNPVPPRPSGHREQPARGMQGVPHFGV----HHATFGRLNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLL 197
            S +  +KK++  FEC++CLD  ++ VV+ CGHL+CWPCL++WL        CPVCK+AI++  VIP+YGRG +  +   E+    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S F      P  N  P   P H +++      ++KIFL L
Sbjct:   18 SGEGDDKKEDRTFECNICLDTAKDAVVSMCGHLFCWPCLHQWLETRLSRQVCPVCKAAISKDKVIPLYGRGSTNQQDPREK----VPPRPAGQRTEPESGSN-FPGFGFGDNGFHMSFG-----------IGAFPFGFFTSTFNFGDVRP--NAAPLGTPQHMEEQ-----FLSKIFLWL 174          
The following BLAST results are available for this feature:
BLAST of Gcaud9161.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWD6_9FLOR1.110e-12179.33RING-type E3 ubiquitin transferase n=1 Tax=Gracila... [more]
R7QGZ6_CHOCR3.520e-7156.12RING-type E3 ubiquitin transferase n=1 Tax=Chondru... [more]
A0A5J4YRT6_PORPP7.470e-3540.24RING-type E3 ubiquitin transferase n=1 Tax=Porphyr... [more]
M2XYA1_GALSU1.340e-3336.00RING-type E3 ubiquitin transferase n=1 Tax=Galdier... [more]
A0A1Y1KVF0_PHOPY2.030e-3338.89RING-type E3 ubiquitin transferase n=3 Tax=Lampyri... [more]
R4WD90_RIPPE2.100e-3341.38RING-type E3 ubiquitin transferase n=2 Tax=Pentato... [more]
D6X296_TRICA4.050e-3340.46RING-type E3 ubiquitin transferase n=2 Tax=Triboli... [more]
A0A2J7PD34_9NEOP4.320e-3337.63RING-type E3 ubiquitin transferase n=2 Tax=Polyneo... [more]
UPI000626E6DB6.640e-3340.22E3 ubiquitin-protein ligase RNF185 isoform X1 n=3 ... [more]
A0A1W4X226_AGRPL7.030e-3338.33RING-type E3 ubiquitin transferase n=1 Tax=Agrilus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..31
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 35..82
e-value: 4.8E-12
score: 45.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..119
NoneNo IPR availablePANTHERPTHR12313:SF0FI06431P-RELATEDcoord: 16..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 170..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..207
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 208..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..146
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 34..78
e-value: 5.02303E-28
score: 98.1451
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 31..89
NoneNo IPR availableTMHMMTMhelixcoord: 185..207
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 36..76
e-value: 1.4E-9
score: 47.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 36..77
score: 13.640012
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 2..89
e-value: 9.5E-20
score: 72.4
IPR045103E3 ubiquitin-protein ligase RNF5/RNF185-likePANTHERPTHR12313E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATEDcoord: 16..182
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 51..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1047_length_14702_cov_4.831086contigNODE_1047_length_14702_cov_4.831086:3131..3839 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9161.t1Gcaud9161.t1Gracilaria caudata M_176_S67 malemRNANODE_1047_length_14702_cov_4.831086 3131..3839 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=209bp
MGEKEPISEHLARAQQRTQAASQDASEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQI
EEGDNPVPPRPSGHREQPARGMQGVPHFGVHHATFGRLNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045103RNF5/RNF185-like
IPR017907Znf_RING_CS