Gcaud1440.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1440.t1
Unique Name	Gcaud1440.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1627_length_9391_cov_4.808495	contig	NODE_1627_length_9391_cov_4.808495:3183..4154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1395571.TMS3_0115070
Preferred name	ghrA
PFAMs	2-Hacid_dh_C
Max annot lvl	1236\|Gammaproteobacteria
KEGG rclass	RC00031,RC00042,RC00670
KEGG ko	ko:K12972
KEGG Reaction	R00465,R01388,R01392,R02527
KEGG Pathway	ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0030267,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Evalue	1.77e-77
EggNOG OGs	COG0111@1\|root,COG0111@2\|Bacteria,1MW1U@1224\|Proteobacteria,1RRQE@1236\|Gammaproteobacteria
EC	1.1.1.79,1.1.1.81
Description	D-isomer specific 2-hydroxyacid dehydrogenase
COG category	EH
BiGG Reaction	iECOK1_1307.ECOK1_1138,iECS88_1305.ECS88_1044,iUMN146_1321.UM146_12160
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1440	Gcaud1440	Gracilaria caudata M_176_S67 male	gene	NODE_1627_length_9391_cov_4.808495 3183..4154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1440.t1.start1	Gcaud1440.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1627_length_9391_cov_4.808495 3183..3185 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1440.t1.CDS1	Gcaud1440.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1627_length_9391_cov_4.808495 3183..4154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1440.t1.exon1	Gcaud1440.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1627_length_9391_cov_4.808495 3183..4154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1440.t1.stop1	Gcaud1440.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1627_length_9391_cov_4.808495 4152..4154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1440.t1	Gcaud1440.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1627_length_9391_cov_4.808495 3183..4154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+
coding sequence from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+

mRNA sequence

>Gcaud1440.t1 ID=Gcaud1440.t1|Name=Gcaud1440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MGGPILLELYHHLDRERTAWVHRLGDLLPNHKILSFSSHHNEFSKLDARA
LSQVEYAVIWRTPFHALAEMPNLRAVLLCSAGADHLRPFEALPSHIPIVR
LVDQDVAEGMATYALHWIVHFHLSFDKYLQNQTTQNWERYPPPLSRREFC
VGVLGFGNIGVAVCRAMRSIGYRVIGCGRSSRQTEEIQCYSVDELDSFLS
ECNALVNVLPLTSRTENFINLNCFRKLRKGAIFVSLGRGATFVENDLCDA
LDSGHLKAAVMDTFRQEPLPASSRLWTHERIVVTPHISGQALARSSAKYI
AENIKRIERGEPPFPVIDRNLQY*

spliced messenger RNA

>Gcaud1440.t1 ID=Gcaud1440.t1|Name=Gcaud1440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGTCCTATCTTGCTCGAGCTCTACCATCACCTTGACAGAGAGAG
AACAGCTTGGGTGCATAGACTTGGTGACCTACTGCCCAACCACAAAATCC
TCTCATTCAGCAGTCACCACAACGAGTTTTCTAAACTTGACGCGCGCGCT
CTTTCGCAAGTCGAATACGCAGTAATATGGCGTACGCCCTTCCATGCGCT
CGCGGAAATGCCAAATCTCAGAGCTGTTTTGCTATGCAGCGCTGGCGCAG
ACCATTTGAGGCCCTTTGAAGCGCTACCGTCACATATTCCGATTGTACGT
CTCGTTGATCAGGATGTTGCGGAAGGTATGGCGACTTATGCACTGCATTG
GATTGTACACTTTCATCTTTCTTTTGACAAGTACTTGCAGAACCAGACCA
CCCAAAACTGGGAGCGATATCCTCCACCGCTTTCCAGACGAGAGTTTTGT
GTTGGAGTGCTCGGGTTTGGAAACATTGGTGTGGCGGTTTGTCGTGCGAT
GCGTTCGATTGGATATCGAGTGATTGGCTGTGGTCGATCAAGTCGTCAAA
CAGAAGAGATTCAGTGCTATTCTGTTGATGAATTGGATAGCTTTCTTTCA
GAATGCAATGCGCTTGTTAACGTTCTGCCGTTGACATCACGCACGGAAAA
CTTCATCAATCTGAACTGTTTTCGGAAGCTACGAAAGGGTGCTATTTTTG
TTAGCTTAGGTCGGGGTGCAACGTTTGTGGAAAACGATTTGTGCGACGCG
TTGGACAGCGGTCATTTGAAAGCGGCAGTTATGGACACCTTTCGACAAGA
GCCACTACCTGCATCATCTCGGTTGTGGACTCATGAGCGAATCGTTGTGA
CTCCTCATATTTCGGGCCAAGCTTTGGCACGCTCGTCGGCCAAGTATATA
GCAGAGAACATCAAACGTATCGAGCGTGGAGAGCCGCCATTTCCAGTTAT
CGATCGGAACTTGCAATATTGA

protein sequence of Gcaud1440.t1

>Gcaud1440.t1 ID=Gcaud1440.t1|Name=Gcaud1440.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MGGPILLELYHHLDRERTAWVHRLGDLLPNHKILSFSSHHNEFSKLDARA
LSQVEYAVIWRTPFHALAEMPNLRAVLLCSAGADHLRPFEALPSHIPIVR
LVDQDVAEGMATYALHWIVHFHLSFDKYLQNQTTQNWERYPPPLSRREFC
VGVLGFGNIGVAVCRAMRSIGYRVIGCGRSSRQTEEIQCYSVDELDSFLS
ECNALVNVLPLTSRTENFINLNCFRKLRKGAIFVSLGRGATFVENDLCDA
LDSGHLKAAVMDTFRQEPLPASSRLWTHERIVVTPHISGQALARSSAKYI
AENIKRIERGEPPFPVIDRNLQY*

mRNA from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1440.t1 ID=Gcaud1440.t1|Name=Gcaud1440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+ (Gracilaria caudata M_176_S67 male)
ATGGGCGGTCCTATCTTGCTCGAGCTCTACCATCACCTTGACAGAGAGAG
AACAGCTTGGGTGCATAGACTTGGTGACCTACTGCCCAACCACAAAATCC
TCTCATTCAGCAGTCACCACAACGAGTTTTCTAAACTTGACGCGCGCGCT
CTTTCGCAAGTCGAATACGCAGTAATATGGCGTACGCCCTTCCATGCGCT
CGCGGAAATGCCAAATCTCAGAGCTGTTTTGCTATGCAGCGCTGGCGCAG
ACCATTTGAGGCCCTTTGAAGCGCTACCGTCACATATTCCGATTGTACGT
CTCGTTGATCAGGATGTTGCGGAAGGTATGGCGACTTATGCACTGCATTG
GATTGTACACTTTCATCTTTCTTTTGACAAGTACTTGCAGAACCAGACCA
CCCAAAACTGGGAGCGATATCCTCCACCGCTTTCCAGACGAGAGTTTTGT
GTTGGAGTGCTCGGGTTTGGAAACATTGGTGTGGCGGTTTGTCGTGCGAT
GCGTTCGATTGGATATCGAGTGATTGGCTGTGGTCGATCAAGTCGTCAAA
CAGAAGAGATTCAGTGCTATTCTGTTGATGAATTGGATAGCTTTCTTTCA
GAATGCAATGCGCTTGTTAACGTTCTGCCGTTGACATCACGCACGGAAAA
CTTCATCAATCTGAACTGTTTTCGGAAGCTACGAAAGGGTGCTATTTTTG
TTAGCTTAGGTCGGGGTGCAACGTTTGTGGAAAACGATTTGTGCGACGCG
TTGGACAGCGGTCATTTGAAAGCGGCAGTTATGGACACCTTTCGACAAGA
GCCACTACCTGCATCATCTCGGTTGTGGACTCATGAGCGAATCGTTGTGA
CTCCTCATATTTCGGGCCAAGCTTTGGCACGCTCGTCGGCCAAGTATATA
GCAGAGAACATCAAACGTATCGAGCGTGGAGAGCCGCCATTTCCAGTTAT
CGATCGGAACTTGCAATATTGA

Coding sequence (CDS) from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+

>Gcaud1440.t1 ID=Gcaud1440.t1|Name=Gcaud1440.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:3183..4154+ (Gracilaria caudata M_176_S67 male)
ATGGGCGGTCCTATCTTGCTCGAGCTCTACCATCACCTTGACAGAGAGAG
AACAGCTTGGGTGCATAGACTTGGTGACCTACTGCCCAACCACAAAATCC
TCTCATTCAGCAGTCACCACAACGAGTTTTCTAAACTTGACGCGCGCGCT
CTTTCGCAAGTCGAATACGCAGTAATATGGCGTACGCCCTTCCATGCGCT
CGCGGAAATGCCAAATCTCAGAGCTGTTTTGCTATGCAGCGCTGGCGCAG
ACCATTTGAGGCCCTTTGAAGCGCTACCGTCACATATTCCGATTGTACGT
CTCGTTGATCAGGATGTTGCGGAAGGTATGGCGACTTATGCACTGCATTG
GATTGTACACTTTCATCTTTCTTTTGACAAGTACTTGCAGAACCAGACCA
CCCAAAACTGGGAGCGATATCCTCCACCGCTTTCCAGACGAGAGTTTTGT
GTTGGAGTGCTCGGGTTTGGAAACATTGGTGTGGCGGTTTGTCGTGCGAT
GCGTTCGATTGGATATCGAGTGATTGGCTGTGGTCGATCAAGTCGTCAAA
CAGAAGAGATTCAGTGCTATTCTGTTGATGAATTGGATAGCTTTCTTTCA
GAATGCAATGCGCTTGTTAACGTTCTGCCGTTGACATCACGCACGGAAAA
CTTCATCAATCTGAACTGTTTTCGGAAGCTACGAAAGGGTGCTATTTTTG
TTAGCTTAGGTCGGGGTGCAACGTTTGTGGAAAACGATTTGTGCGACGCG
TTGGACAGCGGTCATTTGAAAGCGGCAGTTATGGACACCTTTCGACAAGA
GCCACTACCTGCATCATCTCGGTTGTGGACTCATGAGCGAATCGTTGTGA
CTCCTCATATTTCGGGCCAAGCTTTGGCACGCTCGTCGGCCAAGTATATA
GCAGAGAACATCAAACGTATCGAGCGTGGAGAGCCGCCATTTCCAGTTAT
CGATCGGAACTTGCAATATTGA