Gcaud8420.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8420.t1
Unique NameGcaud8420.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Homology
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BLAST of Gcaud8420.t1 vs. uniprot
Match: A0A2V3IZ44_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ44_9FLOR)

HSP 1 Score: 92.4 bits (228), Expect = 3.670e-21
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0 
Query:   83 PVLLHLHDTDEPREASAILAIKTDPPALLVKELQTPLGCLKSAIIRGSDVYRVDV 137
            PV LHLHDT+EPREAS ILAIK DP A LVK+LQTPLGCLKSAIIRG DV RVDV
Sbjct:   27 PVHLHLHDTEEPREASEILAIKPDPLAFLVKDLQTPLGCLKSAIIRGEDVRRVDV 81
The following BLAST results are available for this feature:
BLAST of Gcaud8420.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZ44_9FLOR3.670e-2183.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 78..138
e-value: 8.2E-8
score: 33.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availableTMHMMTMhelixcoord: 4..23
IPR020338SMN complex, gem-associated protein 7PFAMPF11095Gemin7coord: 86..134
e-value: 1.4E-6
score: 28.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1620_length_9450_cov_4.776258contigNODE_1620_length_9450_cov_4.776258:4952..7215 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1Gcaud8420.t1Gracilaria caudata M_176_S67 malemRNANODE_1620_length_9450_cov_4.776258 4952..7215 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MKGYIFFVLCAGLLCSVLGSVVIEKKDLGSSSAKVNELKKGDADLLTNIR
AKNWHGPAKYVPVPVPVGYGYGSYFPFGFGKGPVLLHLHDTDEPREASAI
LAIKTDPPALLVKELQTPLGCLKSAIIRGSDVYRVDVNCSDISPARIDTD
LICGCALSDEDPPFLLVFIPYDPMLRFQRLLTNTCFPSTFFYRLST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020338SMN_gemin7