Gcaud8420.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8420.t1
Unique NameGcaud8420.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1620_length_9450_cov_4.776258contigNODE_1620_length_9450_cov_4.776258:4952..7215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8420Gcaud8420Gracilaria caudata M_176_S67 malegeneNODE_1620_length_9450_cov_4.776258 4952..7215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1Gcaud8420.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1620_length_9450_cov_4.776258 4952..7215 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1.stop1Gcaud8420.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1620_length_9450_cov_4.776258 4952..4954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1.CDS1Gcaud8420.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 4952..5050 -
Gcaud8420.t1.CDS2Gcaud8420.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 5143..5220 -
Gcaud8420.t1.CDS3Gcaud8420.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 5320..5495 -
Gcaud8420.t1.CDS4Gcaud8420.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 6978..7215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1.exon1Gcaud8420.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 4952..5050 -
Gcaud8420.t1.exon2Gcaud8420.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 5143..5220 -
Gcaud8420.t1.exon3Gcaud8420.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 5320..5495 -
Gcaud8420.t1.exon4Gcaud8420.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 6978..7215 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1.intron1Gcaud8420.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1620_length_9450_cov_4.776258 5051..5142 -
Gcaud8420.t1.intron2Gcaud8420.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1620_length_9450_cov_4.776258 5221..5319 -
Gcaud8420.t1.intron3Gcaud8420.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1620_length_9450_cov_4.776258 5496..6977 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8420.t1.start1Gcaud8420.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1620_length_9450_cov_4.776258 7213..7215 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp
MKGYIFFVLCAGLLCSVLGSVVIEKKDLGSSSAKVNELKKGDADLLTNIR
AKNWHGPAKYVPVPVPVGYGYGSYFPFGFGKGPVLLHLHDTDEPREASAI
LAIKTDPPALLVKELQTPLGCLKSAIIRGSDVYRVDVNCSDISPARIDTD
LICGCALSDEDPPFLLVFIPYDPMLRFQRLLTNTCFPSTFFYRLST*
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spliced messenger RNA

>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:4952..7215- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTTACATCTTTTTCGTGCTTTGCGCAGGTTTGCTTTGCTCCGT
TCTTGGAAGCGTTGTCATCGAGAAGAAGGACTTGGGTTCATCTTCCGCCA
AAGTGAACGAATTGAAGAAGGGTGATGCTGATCTTCTAACCAACATTCGC
GCGAAGAACTGGCACGGACCTGCCAAGTATGTCCCTGTTCCGGTGCCGGT
TGGATATGGATACGGTTCTTACTTCCCGTTCGGCTTTGGGAAGGGGCCTG
TTCTTCTTCATCTTCACGATACTGATGAACCTCGAGAAGCCTCAGCCATC
TTGGCCATCAAGACAGATCCCCCAGCACTCTTAGTGAAAGAACTCCAAAC
TCCTCTGGGTTGTCTGAAGTCTGCTATCATCCGAGGCAGTGATGTCTACC
GAGTTGATGTGAACTGCTCCGATATCTCCCCAGCGAGAATTGACACGGAC
TTGATTTGTGGTTGTGCATTGTCTGATGAAGATCCACCCTTCCTTTTGGT
TTTCATTCCGTATGATCCTATGCTGCGCTTCCAGCGCCTTCTGACTAACA
CCTGCTTTCCCTCGACATTTTTCTACCGCTTGTCGACCTAG
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protein sequence of Gcaud8420.t1

>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MKGYIFFVLCAGLLCSVLGSVVIEKKDLGSSSAKVNELKKGDADLLTNIR
AKNWHGPAKYVPVPVPVGYGYGSYFPFGFGKGPVLLHLHDTDEPREASAI
LAIKTDPPALLVKELQTPLGCLKSAIIRGSDVYRVDVNCSDISPARIDTD
LICGCALSDEDPPFLLVFIPYDPMLRFQRLLTNTCFPSTFFYRLST*
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mRNA from alignment at NODE_1620_length_9450_cov_4.776258:4952..7215-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2264bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:4952..7215- (Gracilaria caudata M_176_S67 male)
ATGAAGGGTTACATCTTTTTCGTGCTTTGCGCAGGTTTGCTTTGCTCCGT
TCTTGGAAGCGTTGTCATCGAGAAGAAGGACTTGGGTTCATCTTCCGCCA
AAGTGAACGAATTGAAGAAGGGTGATGCTGATCTTCTAACCAACATTCGC
GCGAAGAACTGGCACGGACCTGCCAAGTATGTCCCTGTTCCGGTGCCGGT
TGGATATGGATACGGTTCTTACTTCCCGTTCGGCTTTGGTCAGTTCCAGC
GCCCTGGACCATTTGGCTTTTTCCCGAGGCCGTTCCGTCCGCGCCCCGCT
CCACCGGCCCCGCGTCCCCCAGCTCCGCGCCCTGCGCGTCCGGCACCGCG
CCCTGCTCGTCCGGCACCACGTCCAGCTCGCCCGGCGCCTCGTCCTGCCC
CCCCGGCTCCGCGTCCAGCACCCCCACTTCCGCCGAGACCGTTCTTTCCG
CCGCCGAGGTTCTTCCCCCGTCCGAACCCCATCCCTGTGTTCGTGCCGCA
GCGTCCGCAAGTCGTTCCGCGCAGGAGGCGAAGGAGATGCCCTAAGGGTT
CTGATGACGACGACGACGACGGCGGCGACGACGACAGCAGTTGCTCCGAT
TCCGATTAAGGTGATGCTTGAAACACTCGTGAGGGACAGCATTTTGCTCT
GTTTGAGCGTTGGGGCAATCTACAGCGGTCTTTAGTCCATTTACGAGTTT
GAGTAAACGGCGATGTGATCAAGTTCGTGTGTCACAAAGCTAAATGATGT
TTTGCTTTCGTTAAGCTTGTGTTTTAAGAAAGAAGATGCAGTAAAGAAGG
ATGTATTTCATTGTTTTGATTGAATGAAGTCTAGAAGACGGCTCTGGTTG
CCCGTAGTCCTATTGACTTGGCCCTCCCGTTAAGCAGAAATAGATATGTG
AAGTCGAATCGCGTGTGACTGTACCGGTATATATCTAGCAGCGTTGATAC
GCCCTCTGAGCTGATTCTTATACGCCACTTCTGACAAGATCATGCTGCGC
ATGGCTATTGGGAGTCTTTGTTCCAAGCCTGCACATCGATGATCGTCTGG
AGCAGCCGTTCATTATCTGCCTGATATACTCTTTATAGACAATCCAGAAA
GCTATTTATCTGCCTTATACGGATCTACATCTTTCCAGTGCTACGTAAAC
GTCTTGACTACACAGTATAGAAAGGAAAGAGAATGTCAAACTTCAGACCA
AAACATATTTCCAAAAAAGTAGGTCCCTTCTCTTCTACTTGCCCGGGATA
TGTGCTTTATACAAGGTGATGCTAGCTGCGAGATCACATGTGAATGCGGT
TGTTTGCACTTTGGGCCTTCCTGAATTAAGCCCTTTCCCCTGAAGAATAT
GTGAAGGTTATCCTTATATCCCGGAACCAAGTCAAAAGGTAAGGGTCCTT
GAATACAAAGGCGCAAATGTTGCAGGTTGCGAGGTTGCTCTCGAGCAGGC
CAGCAAAGCACGCTTAATTGAATTTTTTTGACATGTTTTTGTCAAAAGTT
AAACGAATCTGCCGAACCGCATCAATCTTCGCATCGTCAACTCTTGTAGA
TACCGAGTCCTCCAAGGAGAGGGCAACCAAGACAGCAATATAGCTCGAAT
GCGAGCGGGTTTTGTCAATTACATCATTAGCCTCCGCGAAACCCCTCAGC
ATGCAGAATTTCGATGAACGTGCATCCGCCTCAAGGTTACGTTACCTTTC
AATTCTGAGGTCCATAACAGGGAAGGGGCCTGTTCTTCTTCATCTTCACG
ATACTGATGAACCTCGAGAAGCCTCAGCCATCTTGGCCATCAAGACAGAT
CCCCCAGCACTCTTAGTGAAAGAACTCCAAACTCCTCTGGGTTGTCTGAA
GTCTGCTATCATCCGAGGCAGTGATGTCTACCGAGTTGATGTGAACGTGA
GCCAAGATAACAAGAGTTGACTCCATCTTGTTGGTGTCCGCGCTGGTCAC
ATGGTGTTCGCCGAATGTTCCATGCTTACCTTTATCTCGTTACAGTGCTC
CGATATCTCCCCAGCGAGAATTGACACGGACTTGATTTGTGGTTGTGCAT
TGTCTGATGAAGATCCACCCTTCGTGCGTTCTGTGCCCATGACGATTCTG
TAGTGCAGAAGCTCCTCAGCAGAGACCGCGCCAGATTTGAGAAGCTGCAC
TAACACTCTCTTAAGCTTTTGGTTTTCATTCCGTATGATCCTATGCTGCG
CTTCCAGCGCCTTCTGACTAACACCTGCTTTCCCTCGACATTTTTCTACC
GCTTGTCGACCTAG
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Coding sequence (CDS) from alignment at NODE_1620_length_9450_cov_4.776258:4952..7215-

>Gcaud8420.t1 ID=Gcaud8420.t1|Name=Gcaud8420.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=591bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:4952..7215- (Gracilaria caudata M_176_S67 male)
ATGAAGGGTTACATCTTTTTCGTGCTTTGCGCAGGTTTGCTTTGCTCCGT
TCTTGGAAGCGTTGTCATCGAGAAGAAGGACTTGGGTTCATCTTCCGCCA
AAGTGAACGAATTGAAGAAGGGTGATGCTGATCTTCTAACCAACATTCGC
GCGAAGAACTGGCACGGACCTGCCAAGTATGTCCCTGTTCCGGTGCCGGT
TGGATATGGATACGGTTCTTACTTCCCGTTCGGCTTTGGGAAGGGGCCTG
TTCTTCTTCATCTTCACGATACTGATGAACCTCGAGAAGCCTCAGCCATC
TTGGCCATCAAGACAGATCCCCCAGCACTCTTAGTGAAAGAACTCCAAAC
TCCTCTGGGTTGTCTGAAGTCTGCTATCATCCGAGGCAGTGATGTCTACC
GAGTTGATGTGAACTGCTCCGATATCTCCCCAGCGAGAATTGACACGGAC
TTGATTTGTGGTTGTGCATTGTCTGATGAAGATCCACCCTTCCTTTTGGT
TTTCATTCCGTATGATCCTATGCTGCGCTTCCAGCGCCTTCTGACTAACA
CCTGCTTTCCCTCGACATTTTTCTACCGCTTGTCGACCTAG
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