Gcaud8417.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8417.t1
Unique NameGcaud8417.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1620_length_9450_cov_4.776258contigNODE_1620_length_9450_cov_4.776258:399..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9668.ENSMPUP00000015664
Preferred namePAFAH2
PFAMsPAF-AH_p_II
Max annot lvl33208|Metazoa
KEGG rclassRC00037,RC00094
KEGG koko:K01062
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko01110,ko01130,map00565,map01100,map01110,map01130
GOsGO:0002009,GO:0003674,GO:0003824,GO:0003847,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006629,GO:0006950,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0010941,GO:0012505,GO:0016020,GO:0016042,GO:0016331,GO:0016787,GO:0016788,GO:0031984,GO:0032501,GO:0032502,GO:0042060,GO:0042175,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048598,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0052689,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0071704,GO:0098827,GO:1901575
Evalue3.2e-32
EggNOG OGsCOG4188@1|root,KOG3847@2759|Eukaryota,38D7T@33154|Opisthokonta,3BE36@33208|Metazoa,3D3K0@33213|Bilateria,487PE@7711|Chordata,490Y2@7742|Vertebrata,3J8NK@40674|Mammalia,3ENMK@33554|Carnivora
EC3.1.1.47
DescriptionPlatelet-activating factor acetylhydrolase 2
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8417Gcaud8417Gracilaria caudata M_176_S67 malegeneNODE_1620_length_9450_cov_4.776258 399..2943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1Gcaud8417.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1620_length_9450_cov_4.776258 399..2943 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1.stop1Gcaud8417.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1620_length_9450_cov_4.776258 399..401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1.CDS1Gcaud8417.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 399..1605 -
Gcaud8417.t1.CDS2Gcaud8417.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 2807..2839 -
Gcaud8417.t1.CDS3Gcaud8417.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1620_length_9450_cov_4.776258 2912..2943 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1.exon1Gcaud8417.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 399..1605 -
Gcaud8417.t1.exon2Gcaud8417.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 2807..2839 -
Gcaud8417.t1.exon3Gcaud8417.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1620_length_9450_cov_4.776258 2912..2943 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1.intron1Gcaud8417.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1620_length_9450_cov_4.776258 1606..2806 -
Gcaud8417.t1.intron2Gcaud8417.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1620_length_9450_cov_4.776258 2840..2911 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8417.t1.start1Gcaud8417.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1620_length_9450_cov_4.776258 2941..2943 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8417.t1 ID=Gcaud8417.t1|Name=Gcaud8417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp
MPRLAQDSRFLHVGRMEQVRNLGVPRDNFEMSERPGGRYDVSVADVHLPP
LRARVYYPTTNSSASALQAPWLAPSNEFPHEIVTNALRYVRIPFAQVVGL
PLHGVASRTLPASYGAPLLSSQTLSKLPIHIFSHGLGGATGGYNHVCMEI
ASHGGIVFAPEHSDGSAFLAKVDGERVEYVRYSPLSHGPSELDFRRNQLQ
TRVTDLEQTLRNIQSVDRGDTVLQALEGAPKAPKLTGRLDVSNVHVCGHS
FGGATALAFARSTKVTSVICLDAWMRSLSREVGDVDVGRAKLLFVDQGLS
NMRESISARERLPRMSGGGTCDAVVIEGASHNNSSDFALRLPRWVALATG
MTTRGSDPLELLERQALVVKEFLNGDWRSFRERVRDGQVDGVGIAPMGRA
RCLSFSRQSVQPKAEMGEVQAAE*
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spliced messenger RNA

>Gcaud8417.t1 ID=Gcaud8417.t1|Name=Gcaud8417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:399..2943- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGGCTTGCCCAAGATTCACGGTTCTTACATGTTGGTAGAATGGA
ACAAGTCCGAAACTTGGGCGTGCCGCGTGACAATTTTGAGATGAGCGAAC
GACCAGGTGGTCGGTACGATGTGTCTGTTGCGGACGTACATCTGCCTCCT
CTACGGGCACGAGTGTACTATCCAACGACCAATTCATCAGCTAGCGCTCT
ACAAGCGCCGTGGCTAGCGCCTTCCAACGAATTTCCGCACGAGATTGTAA
CGAATGCGTTGCGATACGTTCGAATTCCGTTTGCACAGGTAGTGGGCTTA
CCTCTCCATGGCGTCGCAAGTAGAACGCTTCCTGCTTCATATGGAGCGCC
GCTGCTTTCCTCGCAAACACTGTCAAAGTTGCCCATACACATTTTCTCGC
ATGGACTAGGAGGGGCTACAGGGGGGTACAATCACGTTTGTATGGAGATT
GCCTCTCACGGAGGAATCGTTTTTGCTCCAGAGCACTCGGATGGTAGTGC
GTTTTTGGCCAAGGTTGACGGCGAACGAGTGGAGTATGTAAGATACAGCC
CATTGTCTCACGGTCCTTCCGAGCTAGACTTTAGGCGCAATCAGCTGCAA
ACTAGAGTAACGGACCTCGAACAAACGTTGCGGAACATTCAAAGCGTGGA
TCGTGGAGATACTGTTTTGCAAGCTTTGGAAGGAGCACCAAAAGCTCCGA
AACTGACTGGAAGATTAGATGTGAGCAATGTTCACGTTTGTGGGCACTCT
TTCGGAGGAGCAACTGCATTGGCGTTTGCAAGAAGCACAAAGGTGACTTC
GGTGATTTGTCTCGATGCATGGATGCGTTCACTGAGTCGCGAAGTTGGGG
ACGTAGATGTGGGACGCGCCAAGCTTCTTTTTGTGGATCAAGGACTGTCG
AACATGCGAGAAAGCATCTCTGCAAGAGAAAGGTTGCCTAGAATGTCTGG
CGGAGGAACATGCGATGCGGTGGTGATTGAGGGGGCTTCTCACAACAACT
CGTCCGACTTCGCGCTGAGACTGCCTAGATGGGTCGCGCTTGCTACAGGG
ATGACTACGAGAGGAAGTGATCCTTTGGAACTGCTAGAACGACAGGCGCT
GGTCGTTAAGGAGTTCCTAAACGGGGATTGGAGGTCGTTTAGAGAGCGTG
TGAGAGATGGGCAGGTGGATGGCGTAGGTATTGCTCCGATGGGAAGAGCG
AGGTGCTTGAGCTTCAGTAGACAATCTGTACAGCCCAAGGCGGAAATGGG
TGAAGTTCAGGCTGCTGAGTGA
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protein sequence of Gcaud8417.t1

>Gcaud8417.t1 ID=Gcaud8417.t1|Name=Gcaud8417.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
MPRLAQDSRFLHVGRMEQVRNLGVPRDNFEMSERPGGRYDVSVADVHLPP
LRARVYYPTTNSSASALQAPWLAPSNEFPHEIVTNALRYVRIPFAQVVGL
PLHGVASRTLPASYGAPLLSSQTLSKLPIHIFSHGLGGATGGYNHVCMEI
ASHGGIVFAPEHSDGSAFLAKVDGERVEYVRYSPLSHGPSELDFRRNQLQ
TRVTDLEQTLRNIQSVDRGDTVLQALEGAPKAPKLTGRLDVSNVHVCGHS
FGGATALAFARSTKVTSVICLDAWMRSLSREVGDVDVGRAKLLFVDQGLS
NMRESISARERLPRMSGGGTCDAVVIEGASHNNSSDFALRLPRWVALATG
MTTRGSDPLELLERQALVVKEFLNGDWRSFRERVRDGQVDGVGIAPMGRA
RCLSFSRQSVQPKAEMGEVQAAE*
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mRNA from alignment at NODE_1620_length_9450_cov_4.776258:399..2943-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8417.t1 ID=Gcaud8417.t1|Name=Gcaud8417.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2545bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:399..2943- (Gracilaria caudata M_176_S67 male)
ATGCCGCGGCTTGCCCAAGATTCACGGTTCTTGTTCGTTTCCCAAACTCC
TGACATACCTGAATACAGAGCGAAGTTAACTGATTTTCCATCCACTCCCG
ATAGACATGTTGGTAGAATGGAACAAGTCCGAAACTTGTACAAACCTGAC
AAGAAAGTGGGATTAGCCTCCACACACAAACCCGACCAGCCTAAACAAGC
ATCGAAGAAATAGGAGTTGCTCAAGCTTATTGGTTCGTTCGCAGCAACAT
CTAGATAGATGCCTCGACGAGTCAAACGAGAGAAGTGATTGACATAGAGG
TAATAATCCTGTTTCATTTGTGAAAAGAAGGTGGGCTTTCCATCAGCACA
GAGCTTTGTGACAGGGTCCATGTCGCAGTCCGCAGGTATAGGACGAGGGT
TCTTTAGAAGAGCACGGCAGAAAGATGGTGTCTTGGAAAAGTGCCATGGT
GTCTGCACTGGGAGGGCTGAAGGAGGAGGAGTGTTTGCTGAAGGAATCGC
ATACACAAGTTGGACACATGCGACAGAAAGCAAGGACAAAACACGAACAA
ACGATTTGGCATTCATTGCGATGTTCTCGGATTAGACTATATGAAAAGGA
TTGACTGACTACGGGTTTCCAGGGGGTCGTTTTAAAGAAAAGACGATTAT
GCCGAGCTCTACCACCTGAAATTGGTCGCGTGGAAGATAGAGAGATCAGC
CTCTAATTCTATCTCCAAAGGTTGGATGTATTGGAAGTGTAGGGTCCCTT
CGCCGTATTACAAAGTTCTTCATTGGACAATCTGTAATGGTCGACACTAC
AGACGTAAACGTAGTGGTGCAAGTTTCCCGCAGAATGGCCAAATAGACCT
TGACGATCGTCGGTTGGTCGAAACATATCAAAACAAAGCAGCTCTCGACT
TTTTGGCTTCTGGGCACGGCGAATGATGTGTGAGGAGGCTGTGAGCCTGA
ATCTCAAGAATAAAACTGTGTGAAGCTCGACGTCGAAAGCCGTGGCCCTG
TAGTGATCGGTCGACAACATGCAAGTCTGGTCAGAGCTTAAACTTTTCGA
ATTCCCCCGAACCATGAATATAACATTGGTCAACGTCTGAGAGCCGTAGG
TTTGCAAGAACAATTCGAAGAACAAAAATCATGGACCCATCAATGACAAA
GCGCTGAAATGATGTGACCTTCCAGCTCAACACGTCTCTCCATTTCGAGC
CGCTGCTACAGCAAAGCCCGCGTACGTGATGCCTCGGCTTCAATTCATAG
GGCCCGGACTCGCGCGTCGTCGAAAATCGCCAGCCGAGCTTTTGTATCAG
CGCCAAATCAAAACTGCGCGTTCATCCTCTCTTCAAAGGGGCGTGCCGCG
TGACAATTTTGAGATGAGCGAACGACCAGGTGGTCGGTACGATGTGTCTG
TTGCGGACGTACATCTGCCTCCTCTACGGGCACGAGTGTACTATCCAACG
ACCAATTCATCAGCTAGCGCTCTACAAGCGCCGTGGCTAGCGCCTTCCAA
CGAATTTCCGCACGAGATTGTAACGAATGCGTTGCGATACGTTCGAATTC
CGTTTGCACAGGTAGTGGGCTTACCTCTCCATGGCGTCGCAAGTAGAACG
CTTCCTGCTTCATATGGAGCGCCGCTGCTTTCCTCGCAAACACTGTCAAA
GTTGCCCATACACATTTTCTCGCATGGACTAGGAGGGGCTACAGGGGGGT
ACAATCACGTTTGTATGGAGATTGCCTCTCACGGAGGAATCGTTTTTGCT
CCAGAGCACTCGGATGGTAGTGCGTTTTTGGCCAAGGTTGACGGCGAACG
AGTGGAGTATGTAAGATACAGCCCATTGTCTCACGGTCCTTCCGAGCTAG
ACTTTAGGCGCAATCAGCTGCAAACTAGAGTAACGGACCTCGAACAAACG
TTGCGGAACATTCAAAGCGTGGATCGTGGAGATACTGTTTTGCAAGCTTT
GGAAGGAGCACCAAAAGCTCCGAAACTGACTGGAAGATTAGATGTGAGCA
ATGTTCACGTTTGTGGGCACTCTTTCGGAGGAGCAACTGCATTGGCGTTT
GCAAGAAGCACAAAGGTGACTTCGGTGATTTGTCTCGATGCATGGATGCG
TTCACTGAGTCGCGAAGTTGGGGACGTAGATGTGGGACGCGCCAAGCTTC
TTTTTGTGGATCAAGGACTGTCGAACATGCGAGAAAGCATCTCTGCAAGA
GAAAGGTTGCCTAGAATGTCTGGCGGAGGAACATGCGATGCGGTGGTGAT
TGAGGGGGCTTCTCACAACAACTCGTCCGACTTCGCGCTGAGACTGCCTA
GATGGGTCGCGCTTGCTACAGGGATGACTACGAGAGGAAGTGATCCTTTG
GAACTGCTAGAACGACAGGCGCTGGTCGTTAAGGAGTTCCTAAACGGGGA
TTGGAGGTCGTTTAGAGAGCGTGTGAGAGATGGGCAGGTGGATGGCGTAG
GTATTGCTCCGATGGGAAGAGCGAGGTGCTTGAGCTTCAGTAGACAATCT
GTACAGCCCAAGGCGGAAATGGGTGAAGTTCAGGCTGCTGAGTGA
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Coding sequence (CDS) from alignment at NODE_1620_length_9450_cov_4.776258:399..2943-

>Gcaud8417.t1 ID=Gcaud8417.t1|Name=Gcaud8417.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1272bp|location=Sequence derived from alignment at NODE_1620_length_9450_cov_4.776258:399..2943- (Gracilaria caudata M_176_S67 male)
ATGCCGCGGCTTGCCCAAGATTCACGGTTCTTACATGTTGGTAGAATGGA
ACAAGTCCGAAACTTGGGCGTGCCGCGTGACAATTTTGAGATGAGCGAAC
GACCAGGTGGTCGGTACGATGTGTCTGTTGCGGACGTACATCTGCCTCCT
CTACGGGCACGAGTGTACTATCCAACGACCAATTCATCAGCTAGCGCTCT
ACAAGCGCCGTGGCTAGCGCCTTCCAACGAATTTCCGCACGAGATTGTAA
CGAATGCGTTGCGATACGTTCGAATTCCGTTTGCACAGGTAGTGGGCTTA
CCTCTCCATGGCGTCGCAAGTAGAACGCTTCCTGCTTCATATGGAGCGCC
GCTGCTTTCCTCGCAAACACTGTCAAAGTTGCCCATACACATTTTCTCGC
ATGGACTAGGAGGGGCTACAGGGGGGTACAATCACGTTTGTATGGAGATT
GCCTCTCACGGAGGAATCGTTTTTGCTCCAGAGCACTCGGATGGTAGTGC
GTTTTTGGCCAAGGTTGACGGCGAACGAGTGGAGTATGTAAGATACAGCC
CATTGTCTCACGGTCCTTCCGAGCTAGACTTTAGGCGCAATCAGCTGCAA
ACTAGAGTAACGGACCTCGAACAAACGTTGCGGAACATTCAAAGCGTGGA
TCGTGGAGATACTGTTTTGCAAGCTTTGGAAGGAGCACCAAAAGCTCCGA
AACTGACTGGAAGATTAGATGTGAGCAATGTTCACGTTTGTGGGCACTCT
TTCGGAGGAGCAACTGCATTGGCGTTTGCAAGAAGCACAAAGGTGACTTC
GGTGATTTGTCTCGATGCATGGATGCGTTCACTGAGTCGCGAAGTTGGGG
ACGTAGATGTGGGACGCGCCAAGCTTCTTTTTGTGGATCAAGGACTGTCG
AACATGCGAGAAAGCATCTCTGCAAGAGAAAGGTTGCCTAGAATGTCTGG
CGGAGGAACATGCGATGCGGTGGTGATTGAGGGGGCTTCTCACAACAACT
CGTCCGACTTCGCGCTGAGACTGCCTAGATGGGTCGCGCTTGCTACAGGG
ATGACTACGAGAGGAAGTGATCCTTTGGAACTGCTAGAACGACAGGCGCT
GGTCGTTAAGGAGTTCCTAAACGGGGATTGGAGGTCGTTTAGAGAGCGTG
TGAGAGATGGGCAGGTGGATGGCGTAGGTATTGCTCCGATGGGAAGAGCG
AGGTGCTTGAGCTTCAGTAGACAATCTGTACAGCCCAAGGCGGAAATGGG
TGAAGTTCAGGCTGCTGAGTGA
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