Gcaud8300.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8300.t1
Unique Name	Gcaud8300.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1612_length_9489_cov_4.304852	contig	NODE_1612_length_9489_cov_4.304852:3930..5273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12433T0
Max annot lvl	2759\|Eukaryota
Evalue	1.53e-06
EggNOG OGs	2E93I@1\|root,2SFHA@2759\|Eukaryota,3AV0X@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8300	Gcaud8300	Gracilaria caudata M_176_S67 male	gene	NODE_1612_length_9489_cov_4.304852 3930..5273 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8300.t1.start1	Gcaud8300.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1612_length_9489_cov_4.304852 3930..3932 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8300.t1.CDS1	Gcaud8300.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1612_length_9489_cov_4.304852 3930..5273 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8300.t1.exon1	Gcaud8300.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1612_length_9489_cov_4.304852 3930..5273 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8300.t1.stop1	Gcaud8300.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1612_length_9489_cov_4.304852 5271..5273 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8300.t1	Gcaud8300.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1612_length_9489_cov_4.304852 3930..5273 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+
coding sequence from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+

mRNA sequence

>Gcaud8300.t1 ID=Gcaud8300.t1|Name=Gcaud8300.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MKIRPRGTSILSAFICVTIALLTASIIPLSTRRGFTFNSLLSRSLIPPPP
TTLPFETFSISKAASTHPHDAKFAQNLRIFLDIIITQYTAWHRQQRLLCD
SDPSHARSLPILVLRNKGKAGVGDRVRSILYTYLVAVASNRLFLIDWQKP
LPVASVLPIPPTYNFTYDASLFTVSSDDEHVIYGPDNYRDLDVYFSSERV
IVNQKPNAFAFNNFISLYDRYPELNISRKIADAGLNNFRVQREEIAPFIL
NALFETSPSLRSSLEQLLPFRGQPYISLHARLGHGVGEKSGRFNFTQRGV
TLEDMSQCIGSLAATMAQQHGCERVFVVTDTKSAREFMEAGIHSVLPGAE
VAHSPIDATHFFALHGSTFFPDESERQQKFEEVFVDLGLLAMGESMVFFE
SGYGAVASWLGAITDSVIVEFDNCTRIQQGKANASDLLQQRLLSAIG*

spliced messenger RNA

>Gcaud8300.t1 ID=Gcaud8300.t1|Name=Gcaud8300.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTCGTCCAAGAGGCACTTCCATCTTGTCGGCCTTCATCTGCGT
CACCATAGCACTTTTGACCGCCTCCATCATCCCCCTCTCCACCCGCCGCG
GCTTCACCTTCAACTCTCTTCTCTCGCGTTCCCTCATCCCGCCCCCACCC
ACAACACTGCCGTTCGAAACCTTCTCAATCTCCAAAGCAGCCTCAACGCA
TCCGCACGACGCGAAATTCGCGCAAAACTTACGCATCTTCCTCGATATCA
TCATCACGCAGTACACCGCATGGCACCGTCAACAACGTCTTCTCTGCGAC
TCCGATCCCTCGCACGCACGCTCGCTTCCGATCTTGGTGCTCCGTAACAA
AGGCAAAGCGGGCGTGGGCGATCGCGTCCGCTCCATCTTGTACACCTATC
TCGTCGCCGTTGCATCCAATCGCTTGTTTCTCATCGACTGGCAGAAACCA
CTTCCTGTTGCCAGTGTTCTTCCCATTCCGCCCACGTACAACTTCACGTA
TGATGCGTCGTTGTTCACGGTCAGCAGCGACGATGAACACGTTATCTACG
GGCCTGATAACTACCGCGATCTTGACGTGTACTTCTCGTCCGAGCGCGTG
ATCGTCAACCAGAAACCCAATGCTTTTGCCTTCAACAACTTCATCTCGCT
GTATGACCGATATCCCGAGCTCAACATATCGCGCAAGATCGCCGACGCCG
GTCTGAACAACTTTCGCGTGCAGCGTGAAGAGATTGCTCCCTTCATTCTC
AATGCGCTGTTCGAAACGTCACCGTCGCTACGCAGCTCGCTTGAACAACT
ACTCCCGTTTCGTGGGCAACCTTACATCTCTCTGCACGCGCGTCTAGGCC
ACGGTGTAGGAGAGAAGAGTGGTCGATTCAATTTCACGCAGCGAGGCGTC
ACGCTGGAAGACATGTCGCAGTGCATCGGATCGTTGGCTGCAACCATGGC
CCAGCAACACGGGTGCGAGCGCGTGTTCGTTGTGACGGACACGAAGAGCG
CCCGCGAGTTCATGGAGGCTGGAATTCATAGTGTATTGCCCGGTGCTGAG
GTCGCACATAGTCCGATTGATGCCACTCACTTCTTTGCGTTGCACGGAAG
TACATTTTTCCCCGACGAAAGCGAGAGACAGCAAAAGTTTGAGGAGGTGT
TTGTGGATCTTGGTTTGTTGGCGATGGGGGAATCAATGGTGTTTTTCGAG
TCGGGTTATGGCGCTGTTGCGTCCTGGCTCGGTGCGATAACGGACTCTGT
GATCGTGGAATTTGATAACTGCACTCGAATTCAACAAGGGAAAGCAAACG
CGAGTGATCTCTTGCAGCAACGGCTATTGAGTGCGATTGGTTGA

protein sequence of Gcaud8300.t1

>Gcaud8300.t1 ID=Gcaud8300.t1|Name=Gcaud8300.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MKIRPRGTSILSAFICVTIALLTASIIPLSTRRGFTFNSLLSRSLIPPPP
TTLPFETFSISKAASTHPHDAKFAQNLRIFLDIIITQYTAWHRQQRLLCD
SDPSHARSLPILVLRNKGKAGVGDRVRSILYTYLVAVASNRLFLIDWQKP
LPVASVLPIPPTYNFTYDASLFTVSSDDEHVIYGPDNYRDLDVYFSSERV
IVNQKPNAFAFNNFISLYDRYPELNISRKIADAGLNNFRVQREEIAPFIL
NALFETSPSLRSSLEQLLPFRGQPYISLHARLGHGVGEKSGRFNFTQRGV
TLEDMSQCIGSLAATMAQQHGCERVFVVTDTKSAREFMEAGIHSVLPGAE
VAHSPIDATHFFALHGSTFFPDESERQQKFEEVFVDLGLLAMGESMVFFE
SGYGAVASWLGAITDSVIVEFDNCTRIQQGKANASDLLQQRLLSAIG*

mRNA from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8300.t1 ID=Gcaud8300.t1|Name=Gcaud8300.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+ (Gracilaria caudata M_176_S67 male)
ATGAAGATTCGTCCAAGAGGCACTTCCATCTTGTCGGCCTTCATCTGCGT
CACCATAGCACTTTTGACCGCCTCCATCATCCCCCTCTCCACCCGCCGCG
GCTTCACCTTCAACTCTCTTCTCTCGCGTTCCCTCATCCCGCCCCCACCC
ACAACACTGCCGTTCGAAACCTTCTCAATCTCCAAAGCAGCCTCAACGCA
TCCGCACGACGCGAAATTCGCGCAAAACTTACGCATCTTCCTCGATATCA
TCATCACGCAGTACACCGCATGGCACCGTCAACAACGTCTTCTCTGCGAC
TCCGATCCCTCGCACGCACGCTCGCTTCCGATCTTGGTGCTCCGTAACAA
AGGCAAAGCGGGCGTGGGCGATCGCGTCCGCTCCATCTTGTACACCTATC
TCGTCGCCGTTGCATCCAATCGCTTGTTTCTCATCGACTGGCAGAAACCA
CTTCCTGTTGCCAGTGTTCTTCCCATTCCGCCCACGTACAACTTCACGTA
TGATGCGTCGTTGTTCACGGTCAGCAGCGACGATGAACACGTTATCTACG
GGCCTGATAACTACCGCGATCTTGACGTGTACTTCTCGTCCGAGCGCGTG
ATCGTCAACCAGAAACCCAATGCTTTTGCCTTCAACAACTTCATCTCGCT
GTATGACCGATATCCCGAGCTCAACATATCGCGCAAGATCGCCGACGCCG
GTCTGAACAACTTTCGCGTGCAGCGTGAAGAGATTGCTCCCTTCATTCTC
AATGCGCTGTTCGAAACGTCACCGTCGCTACGCAGCTCGCTTGAACAACT
ACTCCCGTTTCGTGGGCAACCTTACATCTCTCTGCACGCGCGTCTAGGCC
ACGGTGTAGGAGAGAAGAGTGGTCGATTCAATTTCACGCAGCGAGGCGTC
ACGCTGGAAGACATGTCGCAGTGCATCGGATCGTTGGCTGCAACCATGGC
CCAGCAACACGGGTGCGAGCGCGTGTTCGTTGTGACGGACACGAAGAGCG
CCCGCGAGTTCATGGAGGCTGGAATTCATAGTGTATTGCCCGGTGCTGAG
GTCGCACATAGTCCGATTGATGCCACTCACTTCTTTGCGTTGCACGGAAG
TACATTTTTCCCCGACGAAAGCGAGAGACAGCAAAAGTTTGAGGAGGTGT
TTGTGGATCTTGGTTTGTTGGCGATGGGGGAATCAATGGTGTTTTTCGAG
TCGGGTTATGGCGCTGTTGCGTCCTGGCTCGGTGCGATAACGGACTCTGT
GATCGTGGAATTTGATAACTGCACTCGAATTCAACAAGGGAAAGCAAACG
CGAGTGATCTCTTGCAGCAACGGCTATTGAGTGCGATTGGTTGA

Coding sequence (CDS) from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+

>Gcaud8300.t1 ID=Gcaud8300.t1|Name=Gcaud8300.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:3930..5273+ (Gracilaria caudata M_176_S67 male)
ATGAAGATTCGTCCAAGAGGCACTTCCATCTTGTCGGCCTTCATCTGCGT
CACCATAGCACTTTTGACCGCCTCCATCATCCCCCTCTCCACCCGCCGCG
GCTTCACCTTCAACTCTCTTCTCTCGCGTTCCCTCATCCCGCCCCCACCC
ACAACACTGCCGTTCGAAACCTTCTCAATCTCCAAAGCAGCCTCAACGCA
TCCGCACGACGCGAAATTCGCGCAAAACTTACGCATCTTCCTCGATATCA
TCATCACGCAGTACACCGCATGGCACCGTCAACAACGTCTTCTCTGCGAC
TCCGATCCCTCGCACGCACGCTCGCTTCCGATCTTGGTGCTCCGTAACAA
AGGCAAAGCGGGCGTGGGCGATCGCGTCCGCTCCATCTTGTACACCTATC
TCGTCGCCGTTGCATCCAATCGCTTGTTTCTCATCGACTGGCAGAAACCA
CTTCCTGTTGCCAGTGTTCTTCCCATTCCGCCCACGTACAACTTCACGTA
TGATGCGTCGTTGTTCACGGTCAGCAGCGACGATGAACACGTTATCTACG
GGCCTGATAACTACCGCGATCTTGACGTGTACTTCTCGTCCGAGCGCGTG
ATCGTCAACCAGAAACCCAATGCTTTTGCCTTCAACAACTTCATCTCGCT
GTATGACCGATATCCCGAGCTCAACATATCGCGCAAGATCGCCGACGCCG
GTCTGAACAACTTTCGCGTGCAGCGTGAAGAGATTGCTCCCTTCATTCTC
AATGCGCTGTTCGAAACGTCACCGTCGCTACGCAGCTCGCTTGAACAACT
ACTCCCGTTTCGTGGGCAACCTTACATCTCTCTGCACGCGCGTCTAGGCC
ACGGTGTAGGAGAGAAGAGTGGTCGATTCAATTTCACGCAGCGAGGCGTC
ACGCTGGAAGACATGTCGCAGTGCATCGGATCGTTGGCTGCAACCATGGC
CCAGCAACACGGGTGCGAGCGCGTGTTCGTTGTGACGGACACGAAGAGCG
CCCGCGAGTTCATGGAGGCTGGAATTCATAGTGTATTGCCCGGTGCTGAG
GTCGCACATAGTCCGATTGATGCCACTCACTTCTTTGCGTTGCACGGAAG
TACATTTTTCCCCGACGAAAGCGAGAGACAGCAAAAGTTTGAGGAGGTGT
TTGTGGATCTTGGTTTGTTGGCGATGGGGGAATCAATGGTGTTTTTCGAG
TCGGGTTATGGCGCTGTTGCGTCCTGGCTCGGTGCGATAACGGACTCTGT
GATCGTGGAATTTGATAACTGCACTCGAATTCAACAAGGGAAAGCAAACG
CGAGTGATCTCTTGCAGCAACGGCTATTGAGTGCGATTGGTTGA