Gcaud9162.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9162.t1
Unique Name	Gcaud9162.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1047_length_14702_cov_4.831086	contig	NODE_1047_length_14702_cov_4.831086:8157..9674 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX54435
Preferred name	PYROXD1
PFAMs	Pyr_redox_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16174
KEGG Pathway	ko05203,map05203
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030016,GO:0030017,GO:0033554,GO:0034599,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0099080,GO:0099081,GO:0099512
Evalue	1.44e-80
EggNOG OGs	COG0446@1\|root,KOG2755@2759\|Eukaryota
Description	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein
COG category	L
BRITE	ko00000,ko00001,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9162	Gcaud9162	Gracilaria caudata M_176_S67 male	gene	NODE_1047_length_14702_cov_4.831086 8157..9674 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9162.t1.stop1	Gcaud9162.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1047_length_14702_cov_4.831086 8157..8159 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9162.t1.CDS1	Gcaud9162.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 8157..9674 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9162.t1.exon1	Gcaud9162.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 8157..9674 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9162.t1.start1	Gcaud9162.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1047_length_14702_cov_4.831086 9672..9674 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9162.t1	Gcaud9162.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1047_length_14702_cov_4.831086 8157..9674 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674-
coding sequence from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674-

mRNA sequence

>Gcaud9162.t1 ID=Gcaud9162.t1|Name=Gcaud9162.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=506bp
MRGMKPVVIVGGGIAGTTCASHLSSLAPKLPIVLIDPQSNLRMSSNPVAV
THLATDVGVQTEKSRVWCAQRNITFLQARALKLEPSHLITEDGLCQPYSI
CCITTGASPFVPSALQSFEFRDAVLTLRDTHSVQQLAQGLSRSRAILVIG
AGGIAMELVHEISSCHVVWLTRNHIGGSFFDERAATALTNIFEIDECSRV
NHAQESGSLKSSYENHESSGTNAEGTYMKTNSKASPKAAAVGPQWLRVRQ
SPILYDRTGVVLKDHKQIPFLHGRNKKKVQILEGCEVVRLHKDVKEEWPV
IAQLSNGEFVRCDLIVVATGITANVEWLTDGPIELAAREEGRNGGVMVKA
GVMESSMRGVFAAGDCASVHSPDDSDWFQLRLWSQALTAGRVAAQNMADR
LGFSEAYVGLEFDVFAHATKFFGKRVVLLGRYNAQGLASGYKEYERLGED
YLRVVIKDGRVRGAVLVGDVDSAEVFENLILTQLNIDWLGERIVDKETDL
EEYFD*

spliced messenger RNA

>Gcaud9162.t1 ID=Gcaud9162.t1|Name=Gcaud9162.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGCATGAAGCCAGTGGTTATAGTCGGCGGTGGAATAGCAGGGAC
TACATGCGCTTCGCACTTGTCTTCTTTAGCACCAAAGCTCCCCATAGTTC
TGATTGACCCTCAGTCCAACTTGAGGATGTCATCTAATCCTGTTGCAGTC
ACCCATCTAGCCACGGATGTCGGCGTGCAGACTGAAAAATCCCGTGTCTG
GTGTGCGCAAAGAAACATTACTTTTCTTCAGGCACGAGCTCTGAAGTTAG
AACCAAGCCATTTGATCACAGAGGACGGGCTTTGTCAACCCTATTCTATA
TGTTGCATTACAACCGGTGCCTCTCCTTTTGTCCCATCTGCGCTTCAGTC
TTTCGAATTCCGGGACGCCGTTCTCACATTGCGAGATACTCATTCAGTTC
AACAACTTGCTCAAGGTCTATCGCGATCTCGTGCGATTTTAGTTATCGGC
GCCGGGGGTATTGCTATGGAACTTGTTCATGAAATATCAAGCTGTCATGT
GGTTTGGTTGACTCGAAATCACATCGGTGGTTCCTTCTTTGACGAACGCG
CAGCTACCGCTCTTACGAACATTTTTGAAATAGATGAGTGCTCTCGCGTA
AACCACGCTCAGGAATCAGGTTCATTGAAGTCTTCATATGAAAATCATGA
GAGCTCGGGAACCAACGCCGAAGGTACGTACATGAAAACCAATTCGAAAG
CTTCCCCGAAAGCAGCAGCTGTTGGTCCGCAATGGCTGCGAGTACGGCAA
AGTCCGATTCTGTACGACAGGACAGGCGTAGTGCTCAAGGATCATAAACA
AATTCCCTTTCTCCATGGTAGGAACAAGAAGAAAGTCCAAATTCTTGAAG
GCTGTGAAGTTGTACGTTTGCATAAAGATGTCAAGGAAGAATGGCCAGTC
ATTGCACAACTGTCCAATGGAGAGTTTGTTCGTTGTGATCTTATCGTTGT
TGCAACAGGAATCACTGCCAACGTCGAATGGTTAACAGATGGCCCTATTG
AGTTGGCTGCTCGTGAAGAAGGCCGAAACGGAGGGGTGATGGTCAAAGCA
GGAGTAATGGAAAGCAGCATGCGTGGTGTTTTTGCTGCTGGGGATTGTGC
TTCTGTGCATTCCCCAGACGACTCAGACTGGTTTCAGTTGCGTCTATGGA
GCCAAGCCTTGACTGCAGGGCGTGTTGCAGCACAGAATATGGCAGATAGA
CTTGGTTTTAGTGAAGCATACGTGGGTCTCGAATTTGACGTCTTTGCACA
TGCAACGAAGTTCTTTGGAAAACGAGTTGTATTGCTTGGACGATATAATG
CCCAGGGATTGGCAAGTGGGTACAAAGAGTATGAGAGATTGGGAGAGGAT
TATCTACGAGTTGTAATTAAAGACGGTCGGGTTAGAGGAGCAGTTCTTGT
TGGCGATGTCGATAGTGCTGAAGTATTTGAAAACTTGATTCTGACACAGC
TTAACATTGACTGGCTCGGTGAACGTATAGTAGACAAAGAAACGGACTTG
GAAGAGTACTTTGACTGA

protein sequence of Gcaud9162.t1

>Gcaud9162.t1 ID=Gcaud9162.t1|Name=Gcaud9162.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=506bp
MRGMKPVVIVGGGIAGTTCASHLSSLAPKLPIVLIDPQSNLRMSSNPVAV
THLATDVGVQTEKSRVWCAQRNITFLQARALKLEPSHLITEDGLCQPYSI
CCITTGASPFVPSALQSFEFRDAVLTLRDTHSVQQLAQGLSRSRAILVIG
AGGIAMELVHEISSCHVVWLTRNHIGGSFFDERAATALTNIFEIDECSRV
NHAQESGSLKSSYENHESSGTNAEGTYMKTNSKASPKAAAVGPQWLRVRQ
SPILYDRTGVVLKDHKQIPFLHGRNKKKVQILEGCEVVRLHKDVKEEWPV
IAQLSNGEFVRCDLIVVATGITANVEWLTDGPIELAAREEGRNGGVMVKA
GVMESSMRGVFAAGDCASVHSPDDSDWFQLRLWSQALTAGRVAAQNMADR
LGFSEAYVGLEFDVFAHATKFFGKRVVLLGRYNAQGLASGYKEYERLGED
YLRVVIKDGRVRGAVLVGDVDSAEVFENLILTQLNIDWLGERIVDKETDL
EEYFD*

mRNA from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9162.t1 ID=Gcaud9162.t1|Name=Gcaud9162.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674- (Gracilaria caudata M_176_S67 male)
ATGCGAGGCATGAAGCCAGTGGTTATAGTCGGCGGTGGAATAGCAGGGAC
TACATGCGCTTCGCACTTGTCTTCTTTAGCACCAAAGCTCCCCATAGTTC
TGATTGACCCTCAGTCCAACTTGAGGATGTCATCTAATCCTGTTGCAGTC
ACCCATCTAGCCACGGATGTCGGCGTGCAGACTGAAAAATCCCGTGTCTG
GTGTGCGCAAAGAAACATTACTTTTCTTCAGGCACGAGCTCTGAAGTTAG
AACCAAGCCATTTGATCACAGAGGACGGGCTTTGTCAACCCTATTCTATA
TGTTGCATTACAACCGGTGCCTCTCCTTTTGTCCCATCTGCGCTTCAGTC
TTTCGAATTCCGGGACGCCGTTCTCACATTGCGAGATACTCATTCAGTTC
AACAACTTGCTCAAGGTCTATCGCGATCTCGTGCGATTTTAGTTATCGGC
GCCGGGGGTATTGCTATGGAACTTGTTCATGAAATATCAAGCTGTCATGT
GGTTTGGTTGACTCGAAATCACATCGGTGGTTCCTTCTTTGACGAACGCG
CAGCTACCGCTCTTACGAACATTTTTGAAATAGATGAGTGCTCTCGCGTA
AACCACGCTCAGGAATCAGGTTCATTGAAGTCTTCATATGAAAATCATGA
GAGCTCGGGAACCAACGCCGAAGGTACGTACATGAAAACCAATTCGAAAG
CTTCCCCGAAAGCAGCAGCTGTTGGTCCGCAATGGCTGCGAGTACGGCAA
AGTCCGATTCTGTACGACAGGACAGGCGTAGTGCTCAAGGATCATAAACA
AATTCCCTTTCTCCATGGTAGGAACAAGAAGAAAGTCCAAATTCTTGAAG
GCTGTGAAGTTGTACGTTTGCATAAAGATGTCAAGGAAGAATGGCCAGTC
ATTGCACAACTGTCCAATGGAGAGTTTGTTCGTTGTGATCTTATCGTTGT
TGCAACAGGAATCACTGCCAACGTCGAATGGTTAACAGATGGCCCTATTG
AGTTGGCTGCTCGTGAAGAAGGCCGAAACGGAGGGGTGATGGTCAAAGCA
GGAGTAATGGAAAGCAGCATGCGTGGTGTTTTTGCTGCTGGGGATTGTGC
TTCTGTGCATTCCCCAGACGACTCAGACTGGTTTCAGTTGCGTCTATGGA
GCCAAGCCTTGACTGCAGGGCGTGTTGCAGCACAGAATATGGCAGATAGA
CTTGGTTTTAGTGAAGCATACGTGGGTCTCGAATTTGACGTCTTTGCACA
TGCAACGAAGTTCTTTGGAAAACGAGTTGTATTGCTTGGACGATATAATG
CCCAGGGATTGGCAAGTGGGTACAAAGAGTATGAGAGATTGGGAGAGGAT
TATCTACGAGTTGTAATTAAAGACGGTCGGGTTAGAGGAGCAGTTCTTGT
TGGCGATGTCGATAGTGCTGAAGTATTTGAAAACTTGATTCTGACACAGC
TTAACATTGACTGGCTCGGTGAACGTATAGTAGACAAAGAAACGGACTTG
GAAGAGTACTTTGACTGA

Coding sequence (CDS) from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674-

>Gcaud9162.t1 ID=Gcaud9162.t1|Name=Gcaud9162.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1518bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:8157..9674- (Gracilaria caudata M_176_S67 male)
ATGCGAGGCATGAAGCCAGTGGTTATAGTCGGCGGTGGAATAGCAGGGAC
TACATGCGCTTCGCACTTGTCTTCTTTAGCACCAAAGCTCCCCATAGTTC
TGATTGACCCTCAGTCCAACTTGAGGATGTCATCTAATCCTGTTGCAGTC
ACCCATCTAGCCACGGATGTCGGCGTGCAGACTGAAAAATCCCGTGTCTG
GTGTGCGCAAAGAAACATTACTTTTCTTCAGGCACGAGCTCTGAAGTTAG
AACCAAGCCATTTGATCACAGAGGACGGGCTTTGTCAACCCTATTCTATA
TGTTGCATTACAACCGGTGCCTCTCCTTTTGTCCCATCTGCGCTTCAGTC
TTTCGAATTCCGGGACGCCGTTCTCACATTGCGAGATACTCATTCAGTTC
AACAACTTGCTCAAGGTCTATCGCGATCTCGTGCGATTTTAGTTATCGGC
GCCGGGGGTATTGCTATGGAACTTGTTCATGAAATATCAAGCTGTCATGT
GGTTTGGTTGACTCGAAATCACATCGGTGGTTCCTTCTTTGACGAACGCG
CAGCTACCGCTCTTACGAACATTTTTGAAATAGATGAGTGCTCTCGCGTA
AACCACGCTCAGGAATCAGGTTCATTGAAGTCTTCATATGAAAATCATGA
GAGCTCGGGAACCAACGCCGAAGGTACGTACATGAAAACCAATTCGAAAG
CTTCCCCGAAAGCAGCAGCTGTTGGTCCGCAATGGCTGCGAGTACGGCAA
AGTCCGATTCTGTACGACAGGACAGGCGTAGTGCTCAAGGATCATAAACA
AATTCCCTTTCTCCATGGTAGGAACAAGAAGAAAGTCCAAATTCTTGAAG
GCTGTGAAGTTGTACGTTTGCATAAAGATGTCAAGGAAGAATGGCCAGTC
ATTGCACAACTGTCCAATGGAGAGTTTGTTCGTTGTGATCTTATCGTTGT
TGCAACAGGAATCACTGCCAACGTCGAATGGTTAACAGATGGCCCTATTG
AGTTGGCTGCTCGTGAAGAAGGCCGAAACGGAGGGGTGATGGTCAAAGCA
GGAGTAATGGAAAGCAGCATGCGTGGTGTTTTTGCTGCTGGGGATTGTGC
TTCTGTGCATTCCCCAGACGACTCAGACTGGTTTCAGTTGCGTCTATGGA
GCCAAGCCTTGACTGCAGGGCGTGTTGCAGCACAGAATATGGCAGATAGA
CTTGGTTTTAGTGAAGCATACGTGGGTCTCGAATTTGACGTCTTTGCACA
TGCAACGAAGTTCTTTGGAAAACGAGTTGTATTGCTTGGACGATATAATG
CCCAGGGATTGGCAAGTGGGTACAAAGAGTATGAGAGATTGGGAGAGGAT
TATCTACGAGTTGTAATTAAAGACGGTCGGGTTAGAGGAGCAGTTCTTGT
TGGCGATGTCGATAGTGCTGAAGTATTTGAAAACTTGATTCTGACACAGC
TTAACATTGACTGGCTCGGTGAACGTATAGTAGACAAAGAAACGGACTTG
GAAGAGTACTTTGACTGA