Gcaud8401.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8401.t1
Unique Name	Gcaud8401.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1606_length_9532_cov_4.710306	contig	NODE_1606_length_9532_cov_4.710306:2666..3715 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7918.ENSLOCP00000022219
PFAMs	Aerolysin,ETX_MTX2,Jacalin
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005537,GO:0005575,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0030246,GO:0031224,GO:0032991,GO:0036094,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044425,GO:0046930,GO:0046983,GO:0048029,GO:0048030,GO:0051259,GO:0051260,GO:0065003,GO:0070492,GO:0071840,GO:0098796
Evalue	3.52e-17
EggNOG OGs	2CN27@1\|root,2QTF7@2759\|Eukaryota,39ZD9@33154\|Opisthokonta,3BVEV@33208\|Metazoa,3D5XB@33213\|Bilateria,489EN@7711\|Chordata,49420@7742\|Vertebrata,4A2K0@7898\|Actinopterygii
Description	Natterin-like protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8401	Gcaud8401	Gracilaria caudata M_176_S67 male	gene	NODE_1606_length_9532_cov_4.710306 2666..3715 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8401.t1.stop1	Gcaud8401.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1606_length_9532_cov_4.710306 2666..2668 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8401.t1.CDS1	Gcaud8401.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1606_length_9532_cov_4.710306 2666..3715 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8401.t1.exon1	Gcaud8401.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1606_length_9532_cov_4.710306 2666..3715 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8401.t1.start1	Gcaud8401.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1606_length_9532_cov_4.710306 3713..3715 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8401.t1	Gcaud8401.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1606_length_9532_cov_4.710306 2666..3715 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715-
coding sequence from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715-

mRNA sequence

>Gcaud8401.t1 ID=Gcaud8401.t1|Name=Gcaud8401.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
MHFVLTEEDKMGQKLSVATEKVDFVNLDLFTDNTMVGDDPKINFQSIDQN
GRTIRMLQFYQDQQGGKSIVGLYFQWSDGKYEVLGAQYGEVFTLSLDVDE
RITECVANTLDHPGQQWFTAISMKTSKGQTLDITGETKHEGYSTPVGSGI
LCGMYGHAADLTLGEAPGMPSVGFVFLRDITEVTLSNVSYPGLANQPVPE
TPDFVFVNVIDNLKGLCSEKVSVQVSKTISRQQSWGMSSTINFGSSLKVN
AGIPEIIDVDESFEWKTSETVEQELVGTDTETFSLESDLEADACTKKISS
VMMYHGSIECTYKGDVSAVLDNGKNFKFSVSGPYRGNSSTQVSTKTVDG*

spliced messenger RNA

>Gcaud8401.t1 ID=Gcaud8401.t1|Name=Gcaud8401.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCGTTCTGACTGAAGAAGACAAAATGGGGCAAAAGTTATCCGT
TGCTACTGAAAAGGTAGATTTCGTGAATCTGGATCTTTTCACGGACAATA
CAATGGTCGGAGATGATCCGAAAATCAACTTTCAAAGCATTGACCAGAAC
GGACGTACAATTCGTATGCTGCAGTTCTACCAAGATCAACAAGGAGGAAA
AAGTATCGTCGGTCTATATTTCCAATGGTCTGACGGTAAATATGAGGTTT
TGGGTGCACAATATGGTGAGGTTTTTACTCTTTCTCTCGATGTCGACGAG
CGAATCACCGAATGTGTTGCGAACACTTTGGACCACCCTGGCCAACAATG
GTTTACAGCTATTAGCATGAAGACCTCAAAGGGACAAACCTTAGACATTA
CCGGGGAGACGAAACACGAGGGATATTCTACGCCGGTTGGTTCTGGTATA
TTATGCGGGATGTACGGGCACGCTGCTGACCTTACACTAGGCGAAGCACC
AGGTATGCCTTCTGTCGGATTTGTGTTTCTTCGCGATATCACGGAGGTCA
CCCTTTCGAATGTGTCGTACCCAGGTCTTGCTAATCAGCCTGTGCCTGAG
ACGCCGGACTTCGTTTTCGTGAACGTCATTGATAATTTGAAAGGCCTTTG
TTCGGAGAAAGTATCTGTCCAAGTATCCAAAACAATCTCTAGACAGCAGT
CTTGGGGTATGAGTAGCACTATTAACTTTGGCTCCAGCCTGAAAGTGAAC
GCTGGAATTCCCGAAATAATCGACGTTGACGAAAGTTTTGAGTGGAAAAC
ATCTGAAACTGTGGAGCAAGAGCTAGTTGGCACTGATACGGAGACGTTTA
GCTTAGAAAGCGATTTGGAAGCAGACGCGTGCACGAAGAAGATTTCATCT
GTCATGATGTACCACGGTTCCATAGAGTGCACGTACAAAGGAGATGTTTC
TGCCGTTCTGGATAACGGTAAAAACTTCAAATTTTCCGTAAGTGGACCGT
ACAGAGGAAACTCTAGCACTCAAGTCTCCACGAAAACTGTGGATGGTTGA

protein sequence of Gcaud8401.t1

>Gcaud8401.t1 ID=Gcaud8401.t1|Name=Gcaud8401.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MHFVLTEEDKMGQKLSVATEKVDFVNLDLFTDNTMVGDDPKINFQSIDQN
GRTIRMLQFYQDQQGGKSIVGLYFQWSDGKYEVLGAQYGEVFTLSLDVDE
RITECVANTLDHPGQQWFTAISMKTSKGQTLDITGETKHEGYSTPVGSGI
LCGMYGHAADLTLGEAPGMPSVGFVFLRDITEVTLSNVSYPGLANQPVPE
TPDFVFVNVIDNLKGLCSEKVSVQVSKTISRQQSWGMSSTINFGSSLKVN
AGIPEIIDVDESFEWKTSETVEQELVGTDTETFSLESDLEADACTKKISS
VMMYHGSIECTYKGDVSAVLDNGKNFKFSVSGPYRGNSSTQVSTKTVDG*

mRNA from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8401.t1 ID=Gcaud8401.t1|Name=Gcaud8401.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715- (Gracilaria caudata M_176_S67 male)
ATGCATTTCGTTCTGACTGAAGAAGACAAAATGGGGCAAAAGTTATCCGT
TGCTACTGAAAAGGTAGATTTCGTGAATCTGGATCTTTTCACGGACAATA
CAATGGTCGGAGATGATCCGAAAATCAACTTTCAAAGCATTGACCAGAAC
GGACGTACAATTCGTATGCTGCAGTTCTACCAAGATCAACAAGGAGGAAA
AAGTATCGTCGGTCTATATTTCCAATGGTCTGACGGTAAATATGAGGTTT
TGGGTGCACAATATGGTGAGGTTTTTACTCTTTCTCTCGATGTCGACGAG
CGAATCACCGAATGTGTTGCGAACACTTTGGACCACCCTGGCCAACAATG
GTTTACAGCTATTAGCATGAAGACCTCAAAGGGACAAACCTTAGACATTA
CCGGGGAGACGAAACACGAGGGATATTCTACGCCGGTTGGTTCTGGTATA
TTATGCGGGATGTACGGGCACGCTGCTGACCTTACACTAGGCGAAGCACC
AGGTATGCCTTCTGTCGGATTTGTGTTTCTTCGCGATATCACGGAGGTCA
CCCTTTCGAATGTGTCGTACCCAGGTCTTGCTAATCAGCCTGTGCCTGAG
ACGCCGGACTTCGTTTTCGTGAACGTCATTGATAATTTGAAAGGCCTTTG
TTCGGAGAAAGTATCTGTCCAAGTATCCAAAACAATCTCTAGACAGCAGT
CTTGGGGTATGAGTAGCACTATTAACTTTGGCTCCAGCCTGAAAGTGAAC
GCTGGAATTCCCGAAATAATCGACGTTGACGAAAGTTTTGAGTGGAAAAC
ATCTGAAACTGTGGAGCAAGAGCTAGTTGGCACTGATACGGAGACGTTTA
GCTTAGAAAGCGATTTGGAAGCAGACGCGTGCACGAAGAAGATTTCATCT
GTCATGATGTACCACGGTTCCATAGAGTGCACGTACAAAGGAGATGTTTC
TGCCGTTCTGGATAACGGTAAAAACTTCAAATTTTCCGTAAGTGGACCGT
ACAGAGGAAACTCTAGCACTCAAGTCTCCACGAAAACTGTGGATGGTTGA

Coding sequence (CDS) from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715-

>Gcaud8401.t1 ID=Gcaud8401.t1|Name=Gcaud8401.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1050bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:2666..3715- (Gracilaria caudata M_176_S67 male)
ATGCATTTCGTTCTGACTGAAGAAGACAAAATGGGGCAAAAGTTATCCGT
TGCTACTGAAAAGGTAGATTTCGTGAATCTGGATCTTTTCACGGACAATA
CAATGGTCGGAGATGATCCGAAAATCAACTTTCAAAGCATTGACCAGAAC
GGACGTACAATTCGTATGCTGCAGTTCTACCAAGATCAACAAGGAGGAAA
AAGTATCGTCGGTCTATATTTCCAATGGTCTGACGGTAAATATGAGGTTT
TGGGTGCACAATATGGTGAGGTTTTTACTCTTTCTCTCGATGTCGACGAG
CGAATCACCGAATGTGTTGCGAACACTTTGGACCACCCTGGCCAACAATG
GTTTACAGCTATTAGCATGAAGACCTCAAAGGGACAAACCTTAGACATTA
CCGGGGAGACGAAACACGAGGGATATTCTACGCCGGTTGGTTCTGGTATA
TTATGCGGGATGTACGGGCACGCTGCTGACCTTACACTAGGCGAAGCACC
AGGTATGCCTTCTGTCGGATTTGTGTTTCTTCGCGATATCACGGAGGTCA
CCCTTTCGAATGTGTCGTACCCAGGTCTTGCTAATCAGCCTGTGCCTGAG
ACGCCGGACTTCGTTTTCGTGAACGTCATTGATAATTTGAAAGGCCTTTG
TTCGGAGAAAGTATCTGTCCAAGTATCCAAAACAATCTCTAGACAGCAGT
CTTGGGGTATGAGTAGCACTATTAACTTTGGCTCCAGCCTGAAAGTGAAC
GCTGGAATTCCCGAAATAATCGACGTTGACGAAAGTTTTGAGTGGAAAAC
ATCTGAAACTGTGGAGCAAGAGCTAGTTGGCACTGATACGGAGACGTTTA
GCTTAGAAAGCGATTTGGAAGCAGACGCGTGCACGAAGAAGATTTCATCT
GTCATGATGTACCACGGTTCCATAGAGTGCACGTACAAAGGAGATGTTTC
TGCCGTTCTGGATAACGGTAAAAACTTCAAATTTTCCGTAAGTGGACCGT
ACAGAGGAAACTCTAGCACTCAAGTCTCCACGAAAACTGTGGATGGTTGA