Gcaud8399.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8399.t1
Unique NameGcaud8399.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1606_length_9532_cov_4.710306contigNODE_1606_length_9532_cov_4.710306:185..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8399Gcaud8399Gracilaria caudata M_176_S67 malegeneNODE_1606_length_9532_cov_4.710306 185..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8399.t1Gcaud8399.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1606_length_9532_cov_4.710306 185..701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8399.t1.CDS1Gcaud8399.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1606_length_9532_cov_4.710306 185..543 -
Gcaud8399.t1.CDS2Gcaud8399.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1606_length_9532_cov_4.710306 641..701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8399.t1.exon1Gcaud8399.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1606_length_9532_cov_4.710306 185..543 -
Gcaud8399.t1.exon2Gcaud8399.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1606_length_9532_cov_4.710306 641..701 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8399.t1.intron1Gcaud8399.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1606_length_9532_cov_4.710306 544..640 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8399.t1.start1Gcaud8399.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1606_length_9532_cov_4.710306 699..701 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8399.t1 ID=Gcaud8399.t1|Name=Gcaud8399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=140bp
MSVWGATRRSAVTPSPSETGHDIKEQTVHNVLQNREFSLKDEADRLLLRA
VMGNFKRGPLDVSVWDTVTSKHIYPLNRNDDLDDIMTTVVVEEGRSESML
YALTQSTIPEVIVENDLDIFERTKGHDVLHKALIETRALS
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spliced messenger RNA

>Gcaud8399.t1 ID=Gcaud8399.t1|Name=Gcaud8399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=420bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:185..701- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCTGGGGCGCTACTCGACGCTCTGCTGTGACGCCTTCACCCTC
TGAAACAGGACATGATATCAAGGAGCAAACTGTGCACAATGTGTTGCAGA
ACCGAGAATTCTCGCTCAAGGATGAAGCGGACAGACTCCTTCTTCGAGCT
GTGATGGGAAATTTCAAACGAGGACCGCTTGACGTTTCGGTGTGGGATAC
GGTTACATCAAAGCACATATATCCCCTCAACAGAAATGATGATCTTGACG
ACATCATGACAACGGTTGTGGTTGAGGAAGGAAGAAGTGAAAGCATGCTT
TATGCTTTAACGCAATCTACCATTCCAGAGGTCATTGTTGAAAACGATTT
AGACATATTTGAACGAACAAAGGGGCACGATGTCCTTCACAAGGCATTGA
TAGAAACTAGGGCTCTCTCA
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protein sequence of Gcaud8399.t1

>Gcaud8399.t1 ID=Gcaud8399.t1|Name=Gcaud8399.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=140bp
MSVWGATRRSAVTPSPSETGHDIKEQTVHNVLQNREFSLKDEADRLLLRA
VMGNFKRGPLDVSVWDTVTSKHIYPLNRNDDLDDIMTTVVVEEGRSESML
YALTQSTIPEVIVENDLDIFERTKGHDVLHKALIETRALS
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mRNA from alignment at NODE_1606_length_9532_cov_4.710306:185..701-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8399.t1 ID=Gcaud8399.t1|Name=Gcaud8399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=517bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:185..701- (Gracilaria caudata M_176_S67 male)
ATGTCTGTCTGGGGCGCTACTCGACGCTCTGCTGTGACGCCTTCACCCTC
TGAAACAGGACGTCACGAATGACTCGAAAGGAGTGCCTGCGCACGAGTGA
CAAATCCTGAGGCTGATTTCACATGTTTGCTTCCAACACGGCCTTTGCTT
TACGACAGATGATATCAAGGAGCAAACTGTGCACAATGTGTTGCAGAACC
GAGAATTCTCGCTCAAGGATGAAGCGGACAGACTCCTTCTTCGAGCTGTG
ATGGGAAATTTCAAACGAGGACCGCTTGACGTTTCGGTGTGGGATACGGT
TACATCAAAGCACATATATCCCCTCAACAGAAATGATGATCTTGACGACA
TCATGACAACGGTTGTGGTTGAGGAAGGAAGAAGTGAAAGCATGCTTTAT
GCTTTAACGCAATCTACCATTCCAGAGGTCATTGTTGAAAACGATTTAGA
CATATTTGAACGAACAAAGGGGCACGATGTCCTTCACAAGGCATTGATAG
AAACTAGGGCTCTCTCA
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Coding sequence (CDS) from alignment at NODE_1606_length_9532_cov_4.710306:185..701-

>Gcaud8399.t1 ID=Gcaud8399.t1|Name=Gcaud8399.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=420bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:185..701- (Gracilaria caudata M_176_S67 male)
ATGTCTGTCTGGGGCGCTACTCGACGCTCTGCTGTGACGCCTTCACCCTC
TGAAACAGGACATGATATCAAGGAGCAAACTGTGCACAATGTGTTGCAGA
ACCGAGAATTCTCGCTCAAGGATGAAGCGGACAGACTCCTTCTTCGAGCT
GTGATGGGAAATTTCAAACGAGGACCGCTTGACGTTTCGGTGTGGGATAC
GGTTACATCAAAGCACATATATCCCCTCAACAGAAATGATGATCTTGACG
ACATCATGACAACGGTTGTGGTTGAGGAAGGAAGAAGTGAAAGCATGCTT
TATGCTTTAACGCAATCTACCATTCCAGAGGTCATTGTTGAAAACGATTT
AGACATATTTGAACGAACAAAGGGGCACGATGTCCTTCACAAGGCATTGA
TAGAAACTAGGGCTCTCTCA
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