Gcaud8400.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8400.t1
Unique NameGcaud8400.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1606_length_9532_cov_4.710306contigNODE_1606_length_9532_cov_4.710306:938..1345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8400Gcaud8400Gracilaria caudata M_176_S67 malegeneNODE_1606_length_9532_cov_4.710306 938..1345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8400.t1.stop1Gcaud8400.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1606_length_9532_cov_4.710306 938..940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8400.t1.CDS1Gcaud8400.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1606_length_9532_cov_4.710306 938..1345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8400.t1.exon1Gcaud8400.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1606_length_9532_cov_4.710306 938..1345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8400.t1.start1Gcaud8400.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1606_length_9532_cov_4.710306 1343..1345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8400.t1Gcaud8400.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1606_length_9532_cov_4.710306 938..1345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8400.t1 ID=Gcaud8400.t1|Name=Gcaud8400.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=136bp
MRLMCDENLPCAAESLQILLKRYRTNVQELQRILGFIECIVEKNIRIAFP
IVQAAVSQFKRLVERLVEKGHHDELQPLGRRLLIIIFDRCATQLEDFQCS
EHDIADIIMMFSEGLDDAFVLTGACSDEDRLGIQR*
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spliced messenger RNA

>Gcaud8400.t1 ID=Gcaud8400.t1|Name=Gcaud8400.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:938..1345- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTATGTGCGACGAAAATCTCCCCTGTGCAGCTGAAAGTCTGCA
AATTCTGTTGAAGAGATACAGGACCAACGTGCAAGAACTACAAAGAATTC
TTGGATTTATTGAATGTATAGTGGAGAAAAACATTCGCATCGCTTTTCCA
ATCGTACAGGCCGCCGTTTCCCAGTTCAAGAGACTGGTGGAAAGACTAGT
GGAAAAAGGGCATCACGATGAGCTGCAGCCTCTGGGTCGTCGGCTTCTCA
TTATTATTTTTGACAGATGTGCTACTCAGTTGGAGGATTTCCAATGCTCT
GAACACGACATCGCAGATATAATCATGATGTTCTCAGAAGGTTTAGATGA
TGCATTTGTTCTGACAGGAGCATGTTCTGACGAAGATCGGCTCGGCATTC
AAAGATGA
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protein sequence of Gcaud8400.t1

>Gcaud8400.t1 ID=Gcaud8400.t1|Name=Gcaud8400.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=136bp
MRLMCDENLPCAAESLQILLKRYRTNVQELQRILGFIECIVEKNIRIAFP
IVQAAVSQFKRLVERLVEKGHHDELQPLGRRLLIIIFDRCATQLEDFQCS
EHDIADIIMMFSEGLDDAFVLTGACSDEDRLGIQR*
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mRNA from alignment at NODE_1606_length_9532_cov_4.710306:938..1345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8400.t1 ID=Gcaud8400.t1|Name=Gcaud8400.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:938..1345- (Gracilaria caudata M_176_S67 male)
ATGCGTCTTATGTGCGACGAAAATCTCCCCTGTGCAGCTGAAAGTCTGCA
AATTCTGTTGAAGAGATACAGGACCAACGTGCAAGAACTACAAAGAATTC
TTGGATTTATTGAATGTATAGTGGAGAAAAACATTCGCATCGCTTTTCCA
ATCGTACAGGCCGCCGTTTCCCAGTTCAAGAGACTGGTGGAAAGACTAGT
GGAAAAAGGGCATCACGATGAGCTGCAGCCTCTGGGTCGTCGGCTTCTCA
TTATTATTTTTGACAGATGTGCTACTCAGTTGGAGGATTTCCAATGCTCT
GAACACGACATCGCAGATATAATCATGATGTTCTCAGAAGGTTTAGATGA
TGCATTTGTTCTGACAGGAGCATGTTCTGACGAAGATCGGCTCGGCATTC
AAAGATGA
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Coding sequence (CDS) from alignment at NODE_1606_length_9532_cov_4.710306:938..1345-

>Gcaud8400.t1 ID=Gcaud8400.t1|Name=Gcaud8400.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=408bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:938..1345- (Gracilaria caudata M_176_S67 male)
ATGCGTCTTATGTGCGACGAAAATCTCCCCTGTGCAGCTGAAAGTCTGCA
AATTCTGTTGAAGAGATACAGGACCAACGTGCAAGAACTACAAAGAATTC
TTGGATTTATTGAATGTATAGTGGAGAAAAACATTCGCATCGCTTTTCCA
ATCGTACAGGCCGCCGTTTCCCAGTTCAAGAGACTGGTGGAAAGACTAGT
GGAAAAAGGGCATCACGATGAGCTGCAGCCTCTGGGTCGTCGGCTTCTCA
TTATTATTTTTGACAGATGTGCTACTCAGTTGGAGGATTTCCAATGCTCT
GAACACGACATCGCAGATATAATCATGATGTTCTCAGAAGGTTTAGATGA
TGCATTTGTTCTGACAGGAGCATGTTCTGACGAAGATCGGCTCGGCATTC
AAAGATGA
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