Gcaud8402.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8402.t1
Unique Name	Gcaud8402.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1606_length_9532_cov_4.710306	contig	NODE_1606_length_9532_cov_4.710306:5139..6206 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7918.ENSLOCP00000012059
PFAMs	Aerolysin,ETX_MTX2,Jacalin
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005537,GO:0005575,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0030246,GO:0031224,GO:0032991,GO:0036094,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044425,GO:0046930,GO:0046983,GO:0048029,GO:0048030,GO:0051259,GO:0051260,GO:0065003,GO:0070492,GO:0071840,GO:0098796
Evalue	4.97e-14
EggNOG OGs	2CN27@1\|root,2QTF7@2759\|Eukaryota,39ZD9@33154\|Opisthokonta,3BVEV@33208\|Metazoa,3D5XB@33213\|Bilateria,489EN@7711\|Chordata,49A1H@7742\|Vertebrata,4A9FZ@7898\|Actinopterygii
Description	Natterin-like protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8402	Gcaud8402	Gracilaria caudata M_176_S67 male	gene	NODE_1606_length_9532_cov_4.710306 5139..6206 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8402.t1.start1	Gcaud8402.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1606_length_9532_cov_4.710306 5139..5141 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8402.t1.CDS1	Gcaud8402.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1606_length_9532_cov_4.710306 5139..6206 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8402.t1.exon1	Gcaud8402.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1606_length_9532_cov_4.710306 5139..6206 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8402.t1.stop1	Gcaud8402.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1606_length_9532_cov_4.710306 6204..6206 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8402.t1	Gcaud8402.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1606_length_9532_cov_4.710306 5139..6206 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+
coding sequence from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+

mRNA sequence

>Gcaud8402.t1 ID=Gcaud8402.t1|Name=Gcaud8402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MISYFSDDDVPSDTFMSVIAFGGQQLVGEKSCDLALDGSTVKTIQFWASD
GYVTGVFWELTSGVQKQMGYFPDGSIMQPKKQPYLSNVQSGPALEINLED
DEQMQVIKTTCSEDKLGVGMVTIRTNKNRTFSTPDLGITDPTFSYFSVPG
SGFCAGLFGYYGVQKNEGILTNLGFAMLLPIASARLVIDSYTLPDLDKLK
SQPLYAPSQKYDNTDDSQEQGEDISYTRTLSAETTWSVESTTYLGLEISI
SAGIPFIEKYEAGGSFDVSRASYHSQKASVEFKIEFDWPLSVPSGKALIA
SSKVWCTQLTCPYQGKLYLELVNGKQLQSKYSGTYKGVCFTMQESIFENS
NPTIT*

spliced messenger RNA

>Gcaud8402.t1 ID=Gcaud8402.t1|Name=Gcaud8402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCTTACTTCTCTGACGACGATGTTCCTAGCGATACATTCATGAG
CGTTATTGCATTTGGAGGACAACAGCTGGTTGGAGAGAAATCATGTGACC
TCGCGCTCGATGGCAGCACTGTCAAAACAATTCAATTCTGGGCCTCAGAT
GGCTACGTAACAGGTGTTTTCTGGGAATTGACGAGTGGAGTACAGAAGCA
GATGGGATACTTTCCCGACGGAAGCATTATGCAACCAAAGAAACAACCCT
ACCTCAGCAATGTTCAATCAGGCCCGGCCTTGGAGATTAACCTGGAAGAC
GATGAACAAATGCAAGTGATTAAGACCACTTGTTCCGAAGATAAGTTAGG
CGTAGGAATGGTCACTATCCGGACAAACAAGAATAGGACCTTCTCCACCC
CGGACTTGGGTATCACTGATCCTACATTCAGTTATTTTTCAGTACCAGGC
TCAGGTTTTTGTGCCGGCCTCTTTGGATACTATGGTGTGCAGAAGAACGA
GGGAATTCTCACCAATCTTGGCTTTGCAATGCTCCTACCGATTGCCTCCG
CGCGACTGGTCATTGATTCTTATACCCTCCCAGATTTGGACAAGTTGAAA
TCGCAACCTTTGTATGCCCCTTCACAGAAATACGATAATACCGATGATTC
TCAAGAGCAGGGAGAGGATATTAGTTACACAAGAACGCTTTCCGCAGAGA
CCACGTGGTCAGTGGAGTCAACTACATATCTTGGCCTGGAAATATCTATC
TCTGCAGGTATTCCCTTCATTGAAAAGTATGAGGCAGGCGGCAGTTTCGA
TGTGTCTCGTGCATCCTATCACTCACAGAAAGCCTCAGTTGAATTTAAAA
TAGAATTTGATTGGCCATTGTCAGTTCCCTCCGGGAAGGCACTCATCGCT
AGCTCGAAGGTGTGGTGCACCCAGCTCACTTGTCCGTATCAAGGAAAGCT
TTATTTAGAGTTGGTCAACGGAAAACAACTCCAGAGCAAGTACTCGGGAA
CATACAAGGGGGTGTGCTTCACTATGCAGGAATCTATTTTCGAAAATTCC
AACCCGACTATCACATAA

protein sequence of Gcaud8402.t1

>Gcaud8402.t1 ID=Gcaud8402.t1|Name=Gcaud8402.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MISYFSDDDVPSDTFMSVIAFGGQQLVGEKSCDLALDGSTVKTIQFWASD
GYVTGVFWELTSGVQKQMGYFPDGSIMQPKKQPYLSNVQSGPALEINLED
DEQMQVIKTTCSEDKLGVGMVTIRTNKNRTFSTPDLGITDPTFSYFSVPG
SGFCAGLFGYYGVQKNEGILTNLGFAMLLPIASARLVIDSYTLPDLDKLK
SQPLYAPSQKYDNTDDSQEQGEDISYTRTLSAETTWSVESTTYLGLEISI
SAGIPFIEKYEAGGSFDVSRASYHSQKASVEFKIEFDWPLSVPSGKALIA
SSKVWCTQLTCPYQGKLYLELVNGKQLQSKYSGTYKGVCFTMQESIFENS
NPTIT*

mRNA from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8402.t1 ID=Gcaud8402.t1|Name=Gcaud8402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+ (Gracilaria caudata M_176_S67 male)
ATGATCTCTTACTTCTCTGACGACGATGTTCCTAGCGATACATTCATGAG
CGTTATTGCATTTGGAGGACAACAGCTGGTTGGAGAGAAATCATGTGACC
TCGCGCTCGATGGCAGCACTGTCAAAACAATTCAATTCTGGGCCTCAGAT
GGCTACGTAACAGGTGTTTTCTGGGAATTGACGAGTGGAGTACAGAAGCA
GATGGGATACTTTCCCGACGGAAGCATTATGCAACCAAAGAAACAACCCT
ACCTCAGCAATGTTCAATCAGGCCCGGCCTTGGAGATTAACCTGGAAGAC
GATGAACAAATGCAAGTGATTAAGACCACTTGTTCCGAAGATAAGTTAGG
CGTAGGAATGGTCACTATCCGGACAAACAAGAATAGGACCTTCTCCACCC
CGGACTTGGGTATCACTGATCCTACATTCAGTTATTTTTCAGTACCAGGC
TCAGGTTTTTGTGCCGGCCTCTTTGGATACTATGGTGTGCAGAAGAACGA
GGGAATTCTCACCAATCTTGGCTTTGCAATGCTCCTACCGATTGCCTCCG
CGCGACTGGTCATTGATTCTTATACCCTCCCAGATTTGGACAAGTTGAAA
TCGCAACCTTTGTATGCCCCTTCACAGAAATACGATAATACCGATGATTC
TCAAGAGCAGGGAGAGGATATTAGTTACACAAGAACGCTTTCCGCAGAGA
CCACGTGGTCAGTGGAGTCAACTACATATCTTGGCCTGGAAATATCTATC
TCTGCAGGTATTCCCTTCATTGAAAAGTATGAGGCAGGCGGCAGTTTCGA
TGTGTCTCGTGCATCCTATCACTCACAGAAAGCCTCAGTTGAATTTAAAA
TAGAATTTGATTGGCCATTGTCAGTTCCCTCCGGGAAGGCACTCATCGCT
AGCTCGAAGGTGTGGTGCACCCAGCTCACTTGTCCGTATCAAGGAAAGCT
TTATTTAGAGTTGGTCAACGGAAAACAACTCCAGAGCAAGTACTCGGGAA
CATACAAGGGGGTGTGCTTCACTATGCAGGAATCTATTTTCGAAAATTCC
AACCCGACTATCACATAA

Coding sequence (CDS) from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+

>Gcaud8402.t1 ID=Gcaud8402.t1|Name=Gcaud8402.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_1606_length_9532_cov_4.710306:5139..6206+ (Gracilaria caudata M_176_S67 male)
ATGATCTCTTACTTCTCTGACGACGATGTTCCTAGCGATACATTCATGAG
CGTTATTGCATTTGGAGGACAACAGCTGGTTGGAGAGAAATCATGTGACC
TCGCGCTCGATGGCAGCACTGTCAAAACAATTCAATTCTGGGCCTCAGAT
GGCTACGTAACAGGTGTTTTCTGGGAATTGACGAGTGGAGTACAGAAGCA
GATGGGATACTTTCCCGACGGAAGCATTATGCAACCAAAGAAACAACCCT
ACCTCAGCAATGTTCAATCAGGCCCGGCCTTGGAGATTAACCTGGAAGAC
GATGAACAAATGCAAGTGATTAAGACCACTTGTTCCGAAGATAAGTTAGG
CGTAGGAATGGTCACTATCCGGACAAACAAGAATAGGACCTTCTCCACCC
CGGACTTGGGTATCACTGATCCTACATTCAGTTATTTTTCAGTACCAGGC
TCAGGTTTTTGTGCCGGCCTCTTTGGATACTATGGTGTGCAGAAGAACGA
GGGAATTCTCACCAATCTTGGCTTTGCAATGCTCCTACCGATTGCCTCCG
CGCGACTGGTCATTGATTCTTATACCCTCCCAGATTTGGACAAGTTGAAA
TCGCAACCTTTGTATGCCCCTTCACAGAAATACGATAATACCGATGATTC
TCAAGAGCAGGGAGAGGATATTAGTTACACAAGAACGCTTTCCGCAGAGA
CCACGTGGTCAGTGGAGTCAACTACATATCTTGGCCTGGAAATATCTATC
TCTGCAGGTATTCCCTTCATTGAAAAGTATGAGGCAGGCGGCAGTTTCGA
TGTGTCTCGTGCATCCTATCACTCACAGAAAGCCTCAGTTGAATTTAAAA
TAGAATTTGATTGGCCATTGTCAGTTCCCTCCGGGAAGGCACTCATCGCT
AGCTCGAAGGTGTGGTGCACCCAGCTCACTTGTCCGTATCAAGGAAAGCT
TTATTTAGAGTTGGTCAACGGAAAACAACTCCAGAGCAAGTACTCGGGAA
CATACAAGGGGGTGTGCTTCACTATGCAGGAATCTATTTTCGAAAATTCC
AACCCGACTATCACATAA