Gcaud2494.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2494.t1
Unique NameGcaud2494.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length204
Homology
[Close]
BLAST of Gcaud2494.t1 vs. uniprot
Match: A0A2V3ITK0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK0_9FLOR)

HSP 1 Score: 220 bits (561), Expect = 5.640e-70
Identity = 122/189 (64.55%), Postives = 137/189 (72.49%), Query Frame = 0 
Query:    1 MLRVAVLVAMASLAAANCLPSCRFHFCEHYTTMALYNRTGQIDVPLTPSICHERKSVGVANSGEAYVSMRDSFVRISSIALNGGRAYIAPHFFKTYTQRRSDTSGVGHQKLQFEEDVALAGRCVALPITHVQIVEEARGNVVENAELSHR-MRDCVSFRVRGMGRTGSVAFGVPEAALTESVEPEMSAE 188
            M R  V +A+ +LA+ANCL SCRFHFCE Y  M LYNRT QID  +TP+ICH+R  VGVANSGEA V MRD + RI  I LNGGRA IA HFFKT+T RR+  SGVGHQ LQFEED  L GRCVALPITHVQ +  A GNV +N  LS R MRDCVSFRVR MGR      GVP+  + E +EPEMS E
Sbjct:    1 MFRTVVFLALVALASANCLDSCRFHFCEPYDVMPLYNRTDQIDRAITPAICHKRMRVGVANSGEALVRMRDGYTRIGKIPLNGGRARIARHFFKTFTIRRTRYSGVGHQTLQFEEDAVLGGRCVALPITHVQKL--ANGNVKDNVALSGRPMRDCVSFRVRRMGR-----HGVPQM-IGEELEPEMSEE 181
The following BLAST results are available for this feature:
BLAST of Gcaud2494.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ITK0_9FLOR5.640e-7064.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..203
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1603_length_9539_cov_4.465390contigNODE_1603_length_9539_cov_4.465390:469..1080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2494.t1Gcaud2494.t1Gracilaria caudata M_176_S67 malemRNANODE_1603_length_9539_cov_4.465390 469..1080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2494.t1 ID=Gcaud2494.t1|Name=Gcaud2494.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=204bp
MLRVAVLVAMASLAAANCLPSCRFHFCEHYTTMALYNRTGQIDVPLTPSI
CHERKSVGVANSGEAYVSMRDSFVRISSIALNGGRAYIAPHFFKTYTQRR
SDTSGVGHQKLQFEEDVALAGRCVALPITHVQIVEEARGNVVENAELSHR
MRDCVSFRVRGMGRTGSVAFGVPEAALTESVEPEMSAEPAASAEEQLEGA
VMF*
back to top