Gcaud8559.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8559.t1
Unique NameGcaud8559.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length195
Homology
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A2V3IRW2_9FLOR (40S ribosomal protein S5 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A2V3IRW2_9FLOR)

HSP 1 Score: 370 bits (950), Expect = 2.060e-129
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0
Query:    1 MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            MA VSEVKLFNRWSFE V VEDICL+DYIAV QRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLV+AVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    1 MAAVSEVKLFNRWSFEGVEVEDICLSDYIAVKQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVQAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194          
BLAST of Gcaud8559.t1 vs. uniprot
Match: R7Q4U9_CHOCR (Ribosomal_S7 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4U9_CHOCR)

HSP 1 Score: 369 bits (946), Expect = 7.280e-128
Identity = 185/194 (95.36%), Postives = 190/194 (97.94%), Query Frame = 0
Query:    1 MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            M  V+E+KLFNRWSFEDVRVED+CL DYIAVNQ+ AVYLPHTAGRYN+KRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:   62 MTTVNEIKLFNRWSFEDVRVEDMCLADYIAVNQKHAVYLPHTAGRYNSKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 255          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A5J4Z3W9_PORPP (40S ribosomal protein S5 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W9_PORPP)

HSP 1 Score: 327 bits (838), Expect = 2.440e-112
Identity = 164/194 (84.54%), Postives = 176/194 (90.72%), Query Frame = 0
Query:    1 MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            MA  +EVKLFN+WSFEDV V DI L DYIAV Q  AVYLPHTAGRYN KRF KA CPIVERLVC++MMHGRNNGKK+MA RIVKH FEIIHLLTD+NP+QVLV+AVVNSGPREDSTRIGSAGTVRRQAVDVSP+RR+NVA+ LL TGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK  R
Sbjct:    1 MAAATEVKLFNKWSFEDVDVSDIALADYIAVKQNKAVYLPHTAGRYNKKRFHKAGCPIVERLVCAMMMHGRNNGKKVMATRIVKHTFEIIHLLTDENPVQVLVQAVVNSGPREDSTRIGSAGTVRRQAVDVSPLRRVNVAVALLTTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKGCR 194          
BLAST of Gcaud8559.t1 vs. uniprot
Match: M2VXU3_GALSU (40S ribosomal protein S5e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXU3_GALSU)

HSP 1 Score: 322 bits (825), Expect = 2.100e-110
Identity = 160/191 (83.77%), Postives = 178/191 (93.19%), Query Frame = 0
Query:    4 VSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            ++EVKLFNRWSFEDV V D+ L+DYIAV Q+ AVYLPHTAGRY  KRFRKAQCPIVERLV SLMMHGRNNGKK+MAVRIVK  FEIIHLLTD NP+QV V+AV+N+GPREDSTRIGSAGTVRRQAVDVSP+RR+NVALYL+ TGAREA+FRS+KTI+ECLADE+INA+KGSSNSYAIKKKDEVERVAKANR
Sbjct:    1 MTEVKLFNRWSFEDVEVNDMSLHDYIAVKQKYAVYLPHTAGRYAVKRFRKAQCPIVERLVNSLMMHGRNNGKKLMAVRIVKQAFEIIHLLTDANPVQVFVQAVMNAGPREDSTRIGSAGTVRRQAVDVSPLRRVNVALYLITTGAREASFRSMKTISECLADEIINASKGSSNSYAIKKKDEVERVAKANR 191          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A1X6P5K0_PORUM (Ribosomal_S7 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5K0_PORUM)

HSP 1 Score: 321 bits (822), Expect = 6.460e-110
Identity = 161/188 (85.64%), Postives = 176/188 (93.62%), Query Frame = 0
Query:    7 VKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            V LFNRW FE+V V+DI L DYIAV Q+ AV+LPHTAGRYNAKRFRK+QCPIVERLVCSLMM GRNNGKK+MA RIVKH FEIIHLLTD+NP+QVLV+AV+N+GPREDSTRIGSAGTVRRQAVDVSPMRR+N+AL LL TGARE+AFRSIKTIAECLADELINA+KGSSNSYAIKKKDEVERVAKANR
Sbjct:    6 VALFNRWDFENVDVKDIALIDYIAVKQKYAVFLPHTAGRYNAKRFRKSQCPIVERLVCSLMMKGRNNGKKLMATRIVKHTFEIIHLLTDENPVQVLVDAVINAGPREDSTRIGSAGTVRRQAVDVSPMRRVNMALCLLTTGARESAFRSIKTIAECLADELINASKGSSNSYAIKKKDEVERVAKANR 193          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A7J7IKQ8_9RHOD (Ribosomal protein S5 n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IKQ8_9RHOD)

HSP 1 Score: 319 bits (817), Expect = 4.290e-109
Identity = 156/189 (82.54%), Postives = 176/189 (93.12%), Query Frame = 0
Query:    6 EVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            E+KLFN+WS EDV V DI L DYIAV Q+ AVYLPHTAGRY  +RF+KAQCPIVERLV +LM HGRNNGKK+MA+RIVKH FEIIH+LTDQNP+QVLV+AV+NSGPREDSTRIGSAGTVRRQAVDVSP+RR+NVAL+LL TGARE+AFR++KTIAECLADELINAAKGSSNS+AIKKKDE+ERVAKANR
Sbjct:    9 EIKLFNKWSLEDVEVSDIALADYIAVKQKYAVYLPHTAGRYQTRRFKKAQCPIVERLVNALMKHGRNNGKKLMAIRIVKHSFEIIHVLTDQNPVQVLVDAVINSGPREDSTRIGSAGTVRRQAVDVSPLRRVNVALWLLTTGARESAFRNVKTIAECLADELINAAKGSSNSFAIKKKDEIERVAKANR 197          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A250WR81_9CHLO (Ribosomal_S7 domain-containing protein n=6 Tax=Eukaryota TaxID=2759 RepID=A0A250WR81_9CHLO)

HSP 1 Score: 318 bits (816), Expect = 5.490e-109
Identity = 156/194 (80.41%), Postives = 174/194 (89.69%), Query Frame = 0
Query:    1 MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            MA   ++KLF +WSFEDV+V DI L DYIAV    AVY PHTAGRY  KRFRKAQCPIVERLV SLMMHGRNNGKK++AVRIVKH FEIIHLLTDQNPIQV V+A++NSGPRED+TRIGSAG VRRQAVD+SP+RR+N A+YLL TGAREAAFR+IKT+AECLADEL+NAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    1 MAAQPDIKLFGKWSFEDVQVNDISLEDYIAVKANFAVYAPHTAGRYQKKRFRKAQCPIVERLVASLMMHGRNNGKKLLAVRIVKHAFEIIHLLTDQNPIQVTVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTVAECLADELVNAAKGSSNSYAIKKKDELERVAKANR 194          
BLAST of Gcaud8559.t1 vs. uniprot
Match: G3MHT8_AMBMU (Ribosomal_S7 domain-containing protein (Fragment) n=1 Tax=Amblyomma maculatum TaxID=34609 RepID=G3MHT8_AMBMU)

HSP 1 Score: 319 bits (817), Expect = 8.310e-109
Identity = 158/190 (83.16%), Postives = 175/190 (92.11%), Query Frame = 0
Query:    5 SEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            S+VKLFNRWSFEDV V DI L+DYI V  + A YLPHTAGRY+AKRFRKAQCPIVERL  SLMMHGRNNGKK+MAVRIVKH  E+IHLLTDQNPIQV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RR+N ALYLL TGARE++FR+IKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:   27 SDVKLFNRWSFEDVSVTDISLSDYIGVAGKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMELIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESSFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 216          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A7S2ZL40_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZL40_9RHOD)

HSP 1 Score: 318 bits (814), Expect = 1.030e-108
Identity = 163/192 (84.90%), Postives = 174/192 (90.62%), Query Frame = 0
Query:    4 VSEVKLFNRWSFEDVRVEDICLNDYIAVNQR-SAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            ++EV LFNRWSF+DV V D  L  YIAV Q  + V++PHT+GRY  KRFRKA CPIVERLVCSLMMHGRNNGKK+MA RIVKH FEIIHLLTD+NPIQVLV AVVNSGPREDSTRIGSAGTVRRQAVDVSP+RR+NVALYLL TGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    1 MTEVMLFNRWSFDDVEVGDFGLAQYIAVKQYGNKVFIPHTSGRYQKKRFRKASCPIVERLVCSLMMHGRNNGKKLMATRIVKHTFEIIHLLTDENPIQVLVNAVVNSGPREDSTRIGSAGTVRRQAVDVSPLRRVNVALYLLTTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 192          
BLAST of Gcaud8559.t1 vs. uniprot
Match: A0A090M8V6_OSTTA (Ribosomal protein S5/S7, eukaryotic/archaeal n=5 Tax=Ostreococcus TaxID=70447 RepID=A0A090M8V6_OSTTA)

HSP 1 Score: 318 bits (814), Expect = 1.110e-108
Identity = 155/194 (79.90%), Postives = 177/194 (91.24%), Query Frame = 0
Query:    1 MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKRFRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQVLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGAREAAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 194
            MA V EVKLF +W+F+DV + DI L DYIAV  + AVY+PHTAGR+ AKRFRKAQCPIVERLV SLMMHGRNNGKK+MAVRIVKH  EIIHLLTDQNP+QV+V+A++NSGPRED+TRIGSAG VRRQAVD+SP+RR+N A+YLL TGAREAAFR++KTI+ECLADELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    1 MATVQEVKLFGKWTFDDVEINDISLEDYIAVKPKYAVYVPHTAGRFAAKRFRKAQCPIVERLVNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPVQVIVDAIINSGPREDATRIGSAGVVRRQAVDLSPLRRVNQAIYLLTTGAREAAFRNVKTISECLADELINAAKGSSNSYAIKKKDELERVAKANR 194          
The following BLAST results are available for this feature:
BLAST of Gcaud8559.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRW2_9FLOR2.060e-12996.9140S ribosomal protein S5 n=2 Tax=Rhodymeniophycida... [more]
R7Q4U9_CHOCR7.280e-12895.36Ribosomal_S7 domain-containing protein n=1 Tax=Cho... [more]
A0A5J4Z3W9_PORPP2.440e-11284.5440S ribosomal protein S5 n=1 Tax=Porphyridium purp... [more]
M2VXU3_GALSU2.100e-11083.7740S ribosomal protein S5e n=1 Tax=Galdieria sulphu... [more]
A0A1X6P5K0_PORUM6.460e-11085.64Ribosomal_S7 domain-containing protein n=1 Tax=Por... [more]
A0A7J7IKQ8_9RHOD4.290e-10982.54Ribosomal protein S5 n=2 Tax=Cyanidiaceae TaxID=26... [more]
A0A250WR81_9CHLO5.490e-10980.41Ribosomal_S7 domain-containing protein n=6 Tax=Euk... [more]
G3MHT8_AMBMU8.310e-10983.16Ribosomal_S7 domain-containing protein (Fragment) ... [more]
A0A7S2ZL40_9RHOD1.030e-10884.90Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A090M8V6_OSTTA1.110e-10879.90Ribosomal protein S5/S7, eukaryotic/archaeal n=5 T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036823Ribosomal protein S7 domain superfamilyGENE3D1.10.455.10Ribosomal protein S7 domaincoord: 1..194
e-value: 7.3E-94
score: 314.9
IPR036823Ribosomal protein S7 domain superfamilySUPERFAMILY47973Ribosomal protein S7coord: 8..194
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 51..194
e-value: 4.8E-38
score: 130.1
IPR000235Ribosomal protein S5/S7PIRSFPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 2..194
e-value: 1.7E-41
score: 138.4
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 5..194
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMTIGR01028TIGR01028coord: 6..194
e-value: 4.0E-91
score: 301.7
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealCDDcd14867uS7_Eukaryotecoord: 8..194
e-value: 1.11488E-135
score: 374.968
NoneNo IPR availablePANTHERPTHR11205:SF3640S RIBOSOMAL PROTEIN S5coord: 5..194
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 60..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:12626..13210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1Gcaud8559.t1Gracilaria caudata M_176_S67 malemRNANODE_15_length_84509_cov_4.337096 12626..13210 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKR
FRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQ
VLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGARE
AAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036823Ribosomal_S7_dom_sf
IPR023798Ribosomal_S7_dom
IPR000235Ribosomal_S5/S7
IPR005716Ribosomal_S5/S7_euk/arc
IPR020606Ribosomal_S7_CS