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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2850.Phatr49215 |
| PFAMs | VWA_2 |
| Max annot lvl | 2836|Bacillariophyta |
| Evalue | 2.95e-11 |
| EggNOG OGs | KOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta |
| Description | von Willebrand factor type A domain |
| COG category | PT |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8734.t1.stop1 | Gcaud8734.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1598_length_9575_cov_4.429249 607..609 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8734.t1.start1 | Gcaud8734.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1598_length_9575_cov_4.429249 3142..3144 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8734.t1 ID=Gcaud8734.t1|Name=Gcaud8734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp MVHDDVIENTNQHLSSFSSSVLYINQMKEVSSSFFYYNLLANTAIRKSHS FFGNNSFLGVFFFREKMGISLMMRLILLLNIGIIVQSVSGSQADFEELYQ NTTNAVTEVANELSRHLTPSALCAAPKKCDHESCISHGSGSDSFNTEYKC SGMLDTPGQEEKCKDSCKPSDRPLSLSEAFIASPPGTVQYGNQTLKNERD MIIADQEIRRHACALKQMKGVLPDRFWKYGLKNWIYSSSTAGVHASFPGS ARSRKSGFDECGFTPMQRPWYVTAATGKKDVVFLFEESLTESSKTSRKAL TDTLRTLDPRDYVSVITFSDGGTNVLNSEDKMMPANEANINKLITRVEGL PASAGNPAVTDAFEKAFSVIADSRGSGLWTKCKTSTIIVLLLARAPDCFR HCRQSCTCTGDIVNKIKDLQERHMENFGTHATIVAFSEGDDPHAERLART LVCERESRGIWQRISAMNPSLSSYGDITSMSLYSENPEPYASAVYLDANG LPDVFTVATAVYEDETRRLVGVVGADITVAQVETLVGKENAMAAIQEKNS KDRRCTKSSTLQGCDLHRVRSRPGSAPCADILPKKPSMCYKFKGRLFRRI EKPMTWEEARRSCQDLGDDSDLANADVKGVRSFLSGFVSYDGSWIGLKAS KADTLKWVNGVELSESIEQELFSGKENEKVAEIHQVEFEDACVSLDRRGI SQNGNVLPCGVRREGVCEISVGSKAEETHCSEIFDNDNTSHKPVNNNKCE SVQSCSEEEDEALTKANPLCKDTTKELKEEDRFCCGGKADESGVCPRAPL PTGAIAGIAVAAVVLIVLCALIVWKVVRRRRDGIYEPEIPNRDEA* back to topspliced messenger RNA >Gcaud8734.t1 ID=Gcaud8734.t1|Name=Gcaud8734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2538bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:607..3144- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTCATGACGATGTGATCGAAAACACCAACCAACATCTTTCATCCTT CTCATCCAGCGTTTTGTACATAAACCAAATGAAAGAAGTTTCTTCTAGTT TCTTCTACTACAATCTTCTCGCTAATACTGCCATCAGAAAGAGTCATTCT TTTTTCGGTAACAATTCTTTTCTCGGGGTTTTCTTTTTCCGAGAGAAGAT GGGTATCTCTTTGATGATGAGGCTCATCCTTCTGCTAAATATCGGCATTA TTGTACAATCTGTTTCCGGTTCACAGGCTGATTTTGAAGAGTTGTACCAG AACACCACTAACGCCGTGACGGAGGTAGCTAATGAACTTTCTAGGCATTT GACACCATCCGCATTATGTGCTGCTCCCAAGAAATGCGATCATGAATCTT GCATATCACATGGTAGTGGCAGCGACTCCTTTAATACTGAGTACAAATGC AGCGGTATGCTAGATACTCCTGGTCAAGAAGAGAAATGCAAAGACAGTTG CAAACCAAGCGACCGGCCGCTCTCACTGTCAGAAGCATTCATTGCTTCTC CTCCAGGAACAGTTCAGTACGGAAACCAAACTTTGAAAAACGAGAGGGAC ATGATAATTGCCGATCAGGAAATCCGTCGACATGCTTGTGCTCTTAAGCA AATGAAGGGGGTTCTACCCGACCGCTTCTGGAAATATGGTCTGAAGAATT GGATATATTCATCATCAACGGCGGGGGTGCATGCCAGTTTTCCAGGGTCC GCGAGGTCAAGAAAATCCGGCTTTGATGAATGCGGGTTCACCCCTATGCA GCGTCCGTGGTACGTCACTGCTGCCACTGGCAAAAAGGATGTCGTCTTTT TGTTTGAGGAGAGCCTCACGGAATCATCGAAAACAAGTCGTAAGGCCTTA ACTGACACACTGCGGACTCTCGATCCACGAGATTATGTTTCCGTGATTAC GTTTTCTGATGGAGGTACGAATGTTCTTAATTCTGAGGACAAAATGATGC CCGCCAATGAAGCCAACATTAACAAGCTCATTACAAGGGTTGAAGGTCTA CCGGCCTCGGCGGGTAATCCCGCGGTCACTGATGCTTTTGAAAAGGCGTT TAGTGTAATTGCAGATTCGAGAGGTTCGGGACTTTGGACAAAATGCAAAA CGTCAACGATTATCGTTCTCCTACTTGCAAGAGCTCCAGACTGCTTCCGT CACTGTCGGCAGAGCTGCACATGTACAGGTGATATTGTGAACAAAATCAA GGATCTCCAAGAGCGGCATATGGAAAACTTCGGGACACATGCGACGATAG TAGCGTTTAGTGAAGGAGATGACCCTCACGCGGAGCGGTTGGCGAGAACG CTGGTGTGTGAGAGGGAAAGCCGCGGGATATGGCAGCGCATCTCAGCCAT GAACCCCTCGCTTTCATCGTATGGTGATATCACATCAATGTCGTTGTATT CAGAAAATCCTGAACCGTACGCTTCCGCCGTTTACCTTGATGCCAATGGC CTTCCAGACGTGTTCACCGTTGCCACCGCTGTTTACGAAGATGAGACTCG TCGCCTAGTTGGCGTCGTTGGTGCTGACATCACTGTCGCCCAGGTTGAAA CCCTGGTTGGCAAAGAAAATGCCATGGCGGCGATTCAAGAAAAGAATTCG AAGGACCGCCGCTGCACTAAGTCTTCTACCCTCCAAGGGTGTGACTTGCA TCGCGTCAGATCTCGTCCCGGATCAGCTCCGTGCGCGGACATCTTACCAA AAAAGCCAAGCATGTGCTACAAGTTCAAGGGCAGGCTGTTCAGGAGAATT GAAAAACCCATGACATGGGAAGAAGCAAGACGATCGTGTCAAGATTTGGG TGATGATAGCGACCTCGCAAACGCTGATGTTAAAGGGGTCCGATCTTTTC TTTCTGGGTTTGTTTCTTATGACGGCAGCTGGATCGGGTTGAAGGCAAGC AAGGCCGACACGCTGAAATGGGTCAATGGTGTTGAGCTCTCTGAATCGAT CGAACAGGAACTATTCTCGGGAAAAGAAAATGAGAAAGTAGCAGAGATCC ATCAAGTCGAATTTGAAGATGCCTGTGTAAGTTTGGACCGCAGAGGAATA AGCCAAAATGGAAACGTGCTGCCTTGCGGAGTACGAAGAGAGGGCGTCTG CGAAATTTCAGTAGGATCGAAAGCTGAAGAAACCCATTGCTCCGAAATTT TTGATAATGATAACACTTCCCACAAGCCAGTGAACAATAACAAATGCGAA AGTGTACAATCATGTTCAGAGGAAGAAGATGAGGCTCTAACAAAAGCAAA CCCGTTGTGCAAAGACACAACAAAGGAGTTGAAAGAAGAAGATAGGTTCT GTTGCGGCGGAAAGGCTGATGAAAGCGGCGTGTGTCCCAGAGCTCCTCTC CCGACGGGCGCAATAGCAGGAATCGCTGTTGCCGCCGTCGTTCTCATTGT TCTTTGTGCGCTCATCGTATGGAAAGTAGTTCGGCGTAGAAGGGATGGTA TCTATGAACCTGAGATCCCAAATAGGGACGAAGCATAA back to topprotein sequence of Gcaud8734.t1 >Gcaud8734.t1 ID=Gcaud8734.t1|Name=Gcaud8734.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=846bp
MVHDDVIENTNQHLSSFSSSVLYINQMKEVSSSFFYYNLLANTAIRKSHS FFGNNSFLGVFFFREKMGISLMMRLILLLNIGIIVQSVSGSQADFEELYQ NTTNAVTEVANELSRHLTPSALCAAPKKCDHESCISHGSGSDSFNTEYKC SGMLDTPGQEEKCKDSCKPSDRPLSLSEAFIASPPGTVQYGNQTLKNERD MIIADQEIRRHACALKQMKGVLPDRFWKYGLKNWIYSSSTAGVHASFPGS ARSRKSGFDECGFTPMQRPWYVTAATGKKDVVFLFEESLTESSKTSRKAL TDTLRTLDPRDYVSVITFSDGGTNVLNSEDKMMPANEANINKLITRVEGL PASAGNPAVTDAFEKAFSVIADSRGSGLWTKCKTSTIIVLLLARAPDCFR HCRQSCTCTGDIVNKIKDLQERHMENFGTHATIVAFSEGDDPHAERLART LVCERESRGIWQRISAMNPSLSSYGDITSMSLYSENPEPYASAVYLDANG LPDVFTVATAVYEDETRRLVGVVGADITVAQVETLVGKENAMAAIQEKNS KDRRCTKSSTLQGCDLHRVRSRPGSAPCADILPKKPSMCYKFKGRLFRRI EKPMTWEEARRSCQDLGDDSDLANADVKGVRSFLSGFVSYDGSWIGLKAS KADTLKWVNGVELSESIEQELFSGKENEKVAEIHQVEFEDACVSLDRRGI SQNGNVLPCGVRREGVCEISVGSKAEETHCSEIFDNDNTSHKPVNNNKCE SVQSCSEEEDEALTKANPLCKDTTKELKEEDRFCCGGKADESGVCPRAPL PTGAIAGIAVAAVVLIVLCALIVWKVVRRRRDGIYEPEIPNRDEA* back to topmRNA from alignment at NODE_1598_length_9575_cov_4.429249:607..3144- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8734.t1 ID=Gcaud8734.t1|Name=Gcaud8734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2538bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:607..3144- (Gracilaria caudata M_176_S67 male) ATGGTTCATGACGATGTGATCGAAAACACCAACCAACATCTTTCATCCTT
CTCATCCAGCGTTTTGTACATAAACCAAATGAAAGAAGTTTCTTCTAGTT
TCTTCTACTACAATCTTCTCGCTAATACTGCCATCAGAAAGAGTCATTCT
TTTTTCGGTAACAATTCTTTTCTCGGGGTTTTCTTTTTCCGAGAGAAGAT
GGGTATCTCTTTGATGATGAGGCTCATCCTTCTGCTAAATATCGGCATTA
TTGTACAATCTGTTTCCGGTTCACAGGCTGATTTTGAAGAGTTGTACCAG
AACACCACTAACGCCGTGACGGAGGTAGCTAATGAACTTTCTAGGCATTT
GACACCATCCGCATTATGTGCTGCTCCCAAGAAATGCGATCATGAATCTT
GCATATCACATGGTAGTGGCAGCGACTCCTTTAATACTGAGTACAAATGC
AGCGGTATGCTAGATACTCCTGGTCAAGAAGAGAAATGCAAAGACAGTTG
CAAACCAAGCGACCGGCCGCTCTCACTGTCAGAAGCATTCATTGCTTCTC
CTCCAGGAACAGTTCAGTACGGAAACCAAACTTTGAAAAACGAGAGGGAC
ATGATAATTGCCGATCAGGAAATCCGTCGACATGCTTGTGCTCTTAAGCA
AATGAAGGGGGTTCTACCCGACCGCTTCTGGAAATATGGTCTGAAGAATT
GGATATATTCATCATCAACGGCGGGGGTGCATGCCAGTTTTCCAGGGTCC
GCGAGGTCAAGAAAATCCGGCTTTGATGAATGCGGGTTCACCCCTATGCA
GCGTCCGTGGTACGTCACTGCTGCCACTGGCAAAAAGGATGTCGTCTTTT
TGTTTGAGGAGAGCCTCACGGAATCATCGAAAACAAGTCGTAAGGCCTTA
ACTGACACACTGCGGACTCTCGATCCACGAGATTATGTTTCCGTGATTAC
GTTTTCTGATGGAGGTACGAATGTTCTTAATTCTGAGGACAAAATGATGC
CCGCCAATGAAGCCAACATTAACAAGCTCATTACAAGGGTTGAAGGTCTA
CCGGCCTCGGCGGGTAATCCCGCGGTCACTGATGCTTTTGAAAAGGCGTT
TAGTGTAATTGCAGATTCGAGAGGTTCGGGACTTTGGACAAAATGCAAAA
CGTCAACGATTATCGTTCTCCTACTTGCAAGAGCTCCAGACTGCTTCCGT
CACTGTCGGCAGAGCTGCACATGTACAGGTGATATTGTGAACAAAATCAA
GGATCTCCAAGAGCGGCATATGGAAAACTTCGGGACACATGCGACGATAG
TAGCGTTTAGTGAAGGAGATGACCCTCACGCGGAGCGGTTGGCGAGAACG
CTGGTGTGTGAGAGGGAAAGCCGCGGGATATGGCAGCGCATCTCAGCCAT
GAACCCCTCGCTTTCATCGTATGGTGATATCACATCAATGTCGTTGTATT
CAGAAAATCCTGAACCGTACGCTTCCGCCGTTTACCTTGATGCCAATGGC
CTTCCAGACGTGTTCACCGTTGCCACCGCTGTTTACGAAGATGAGACTCG
TCGCCTAGTTGGCGTCGTTGGTGCTGACATCACTGTCGCCCAGGTTGAAA
CCCTGGTTGGCAAAGAAAATGCCATGGCGGCGATTCAAGAAAAGAATTCG
AAGGACCGCCGCTGCACTAAGTCTTCTACCCTCCAAGGGTGTGACTTGCA
TCGCGTCAGATCTCGTCCCGGATCAGCTCCGTGCGCGGACATCTTACCAA
AAAAGCCAAGCATGTGCTACAAGTTCAAGGGCAGGCTGTTCAGGAGAATT
GAAAAACCCATGACATGGGAAGAAGCAAGACGATCGTGTCAAGATTTGGG
TGATGATAGCGACCTCGCAAACGCTGATGTTAAAGGGGTCCGATCTTTTC
TTTCTGGGTTTGTTTCTTATGACGGCAGCTGGATCGGGTTGAAGGCAAGC
AAGGCCGACACGCTGAAATGGGTCAATGGTGTTGAGCTCTCTGAATCGAT
CGAACAGGAACTATTCTCGGGAAAAGAAAATGAGAAAGTAGCAGAGATCC
ATCAAGTCGAATTTGAAGATGCCTGTGTAAGTTTGGACCGCAGAGGAATA
AGCCAAAATGGAAACGTGCTGCCTTGCGGAGTACGAAGAGAGGGCGTCTG
CGAAATTTCAGTAGGATCGAAAGCTGAAGAAACCCATTGCTCCGAAATTT
TTGATAATGATAACACTTCCCACAAGCCAGTGAACAATAACAAATGCGAA
AGTGTACAATCATGTTCAGAGGAAGAAGATGAGGCTCTAACAAAAGCAAA
CCCGTTGTGCAAAGACACAACAAAGGAGTTGAAAGAAGAAGATAGGTTCT
GTTGCGGCGGAAAGGCTGATGAAAGCGGCGTGTGTCCCAGAGCTCCTCTC
CCGACGGGCGCAATAGCAGGAATCGCTGTTGCCGCCGTCGTTCTCATTGT
TCTTTGTGCGCTCATCGTATGGAAAGTAGTTCGGCGTAGAAGGGATGGTA
TCTATGAACCTGAGATCCCAAATAGGGACGAAGCATAA back to topCoding sequence (CDS) from alignment at NODE_1598_length_9575_cov_4.429249:607..3144- >Gcaud8734.t1 ID=Gcaud8734.t1|Name=Gcaud8734.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2538bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:607..3144- (Gracilaria caudata M_176_S67 male) ATGGTTCATGACGATGTGATCGAAAACACCAACCAACATCTTTCATCCTT CTCATCCAGCGTTTTGTACATAAACCAAATGAAAGAAGTTTCTTCTAGTT TCTTCTACTACAATCTTCTCGCTAATACTGCCATCAGAAAGAGTCATTCT TTTTTCGGTAACAATTCTTTTCTCGGGGTTTTCTTTTTCCGAGAGAAGAT GGGTATCTCTTTGATGATGAGGCTCATCCTTCTGCTAAATATCGGCATTA TTGTACAATCTGTTTCCGGTTCACAGGCTGATTTTGAAGAGTTGTACCAG AACACCACTAACGCCGTGACGGAGGTAGCTAATGAACTTTCTAGGCATTT GACACCATCCGCATTATGTGCTGCTCCCAAGAAATGCGATCATGAATCTT GCATATCACATGGTAGTGGCAGCGACTCCTTTAATACTGAGTACAAATGC AGCGGTATGCTAGATACTCCTGGTCAAGAAGAGAAATGCAAAGACAGTTG CAAACCAAGCGACCGGCCGCTCTCACTGTCAGAAGCATTCATTGCTTCTC CTCCAGGAACAGTTCAGTACGGAAACCAAACTTTGAAAAACGAGAGGGAC ATGATAATTGCCGATCAGGAAATCCGTCGACATGCTTGTGCTCTTAAGCA AATGAAGGGGGTTCTACCCGACCGCTTCTGGAAATATGGTCTGAAGAATT GGATATATTCATCATCAACGGCGGGGGTGCATGCCAGTTTTCCAGGGTCC GCGAGGTCAAGAAAATCCGGCTTTGATGAATGCGGGTTCACCCCTATGCA GCGTCCGTGGTACGTCACTGCTGCCACTGGCAAAAAGGATGTCGTCTTTT TGTTTGAGGAGAGCCTCACGGAATCATCGAAAACAAGTCGTAAGGCCTTA ACTGACACACTGCGGACTCTCGATCCACGAGATTATGTTTCCGTGATTAC GTTTTCTGATGGAGGTACGAATGTTCTTAATTCTGAGGACAAAATGATGC CCGCCAATGAAGCCAACATTAACAAGCTCATTACAAGGGTTGAAGGTCTA CCGGCCTCGGCGGGTAATCCCGCGGTCACTGATGCTTTTGAAAAGGCGTT TAGTGTAATTGCAGATTCGAGAGGTTCGGGACTTTGGACAAAATGCAAAA CGTCAACGATTATCGTTCTCCTACTTGCAAGAGCTCCAGACTGCTTCCGT CACTGTCGGCAGAGCTGCACATGTACAGGTGATATTGTGAACAAAATCAA GGATCTCCAAGAGCGGCATATGGAAAACTTCGGGACACATGCGACGATAG TAGCGTTTAGTGAAGGAGATGACCCTCACGCGGAGCGGTTGGCGAGAACG CTGGTGTGTGAGAGGGAAAGCCGCGGGATATGGCAGCGCATCTCAGCCAT GAACCCCTCGCTTTCATCGTATGGTGATATCACATCAATGTCGTTGTATT CAGAAAATCCTGAACCGTACGCTTCCGCCGTTTACCTTGATGCCAATGGC CTTCCAGACGTGTTCACCGTTGCCACCGCTGTTTACGAAGATGAGACTCG TCGCCTAGTTGGCGTCGTTGGTGCTGACATCACTGTCGCCCAGGTTGAAA CCCTGGTTGGCAAAGAAAATGCCATGGCGGCGATTCAAGAAAAGAATTCG AAGGACCGCCGCTGCACTAAGTCTTCTACCCTCCAAGGGTGTGACTTGCA TCGCGTCAGATCTCGTCCCGGATCAGCTCCGTGCGCGGACATCTTACCAA AAAAGCCAAGCATGTGCTACAAGTTCAAGGGCAGGCTGTTCAGGAGAATT GAAAAACCCATGACATGGGAAGAAGCAAGACGATCGTGTCAAGATTTGGG TGATGATAGCGACCTCGCAAACGCTGATGTTAAAGGGGTCCGATCTTTTC TTTCTGGGTTTGTTTCTTATGACGGCAGCTGGATCGGGTTGAAGGCAAGC AAGGCCGACACGCTGAAATGGGTCAATGGTGTTGAGCTCTCTGAATCGAT CGAACAGGAACTATTCTCGGGAAAAGAAAATGAGAAAGTAGCAGAGATCC ATCAAGTCGAATTTGAAGATGCCTGTGTAAGTTTGGACCGCAGAGGAATA AGCCAAAATGGAAACGTGCTGCCTTGCGGAGTACGAAGAGAGGGCGTCTG CGAAATTTCAGTAGGATCGAAAGCTGAAGAAACCCATTGCTCCGAAATTT TTGATAATGATAACACTTCCCACAAGCCAGTGAACAATAACAAATGCGAA AGTGTACAATCATGTTCAGAGGAAGAAGATGAGGCTCTAACAAAAGCAAA CCCGTTGTGCAAAGACACAACAAAGGAGTTGAAAGAAGAAGATAGGTTCT GTTGCGGCGGAAAGGCTGATGAAAGCGGCGTGTGTCCCAGAGCTCCTCTC CCGACGGGCGCAATAGCAGGAATCGCTGTTGCCGCCGTCGTTCTCATTGT TCTTTGTGCGCTCATCGTATGGAAAGTAGTTCGGCGTAGAAGGGATGGTA TCTATGAACCTGAGATCCCAAATAGGGACGAAGCATAA back to top
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