Gcaud8376.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8376.t1
Unique Name	Gcaud8376.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1596_length_9578_cov_4.940550	contig	NODE_1596_length_9578_cov_4.940550:6796..8463 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8376	Gcaud8376	Gracilaria caudata M_176_S67 male	gene	NODE_1596_length_9578_cov_4.940550 6796..8463 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8376.t1.start1	Gcaud8376.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1596_length_9578_cov_4.940550 6796..6798 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8376.t1.CDS1	Gcaud8376.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1596_length_9578_cov_4.940550 6796..8463 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8376.t1.exon1	Gcaud8376.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1596_length_9578_cov_4.940550 6796..8463 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8376.t1.stop1	Gcaud8376.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1596_length_9578_cov_4.940550 8461..8463 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8376.t1	Gcaud8376.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1596_length_9578_cov_4.940550 6796..8463 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+
coding sequence from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+

mRNA sequence

>Gcaud8376.t1 ID=Gcaud8376.t1|Name=Gcaud8376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=556bp
MRKTKAAARQRRAIANKAFKLPLVKMFLKFIEGELDYVKTVRAVTFLIYF
WTMLGVFELPDLGCFAVFRCRGVRNVLGPIRKVISLLTEEQLVAMEIIGR
TRLTRDSLTTRIMQSEGVESKRMAAAYILFSRAIACYHTSFFEPFILGKK
VSVEDAIEKTTEEVTRQHDYLYTLAQEVANRGEGINFWFKAARAAKLDPS
ILDITLRGLSEIVHVGRLAEGRDHILWEASWKSRGESQCPYRDYVNPDED
VPFFCLSYKHETANEPLDADELLGALRKAAQMAFSLYGKPCFRIWIDQLV
FGSTQTWVGIGLMPFLLFPTVFASKAERNTSSSWICLEKICSQLIVGGNL
ETHPWESVACSNTLLESISAVAEIVSKQKQGNTTIRPDDLDYLQLWAKGV
LYGKRDASVFEGIREEIGLPWNLSEGKKMHYIALFSLKVDNNSVLRNYYN
QRNQQLNSTSDWDLKHIFFEAQPKVTDIDAVENITRAVVVEGSSSTLVLV
TQFSNANMYTLLKVRHQSNGKIRVESMCAISEEQAEALGVLKDGGVKIVR
LESLC*

spliced messenger RNA

>Gcaud8376.t1 ID=Gcaud8376.t1|Name=Gcaud8376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAAGACCAAAGCGGCCGCCCGGCAACGGAGAGCCATAGCTAACAA
GGCCTTTAAACTTCCTCTTGTAAAGATGTTCCTTAAGTTTATAGAGGGAG
AATTGGACTACGTGAAAACTGTGAGGGCAGTTACATTCCTTATTTACTTT
TGGACGATGCTTGGAGTGTTTGAACTCCCGGATCTCGGATGTTTTGCCGT
TTTCAGATGCAGAGGGGTGCGAAACGTGCTTGGGCCCATACGTAAGGTTA
TATCGCTCCTGACCGAGGAGCAGCTTGTAGCAATGGAAATAATTGGGAGG
ACAAGGTTAACTAGAGATTCCCTTACCACCAGGATTATGCAATCAGAAGG
TGTAGAGTCGAAGCGTATGGCCGCAGCATATATATTATTCTCAAGGGCAA
TAGCTTGTTATCACACTTCCTTTTTTGAGCCATTTATTTTGGGCAAAAAG
GTAAGCGTCGAGGATGCTATAGAGAAAACAACGGAAGAAGTAACTCGTCA
GCATGATTATCTGTACACCTTAGCACAAGAAGTGGCAAACAGGGGAGAGG
GAATCAACTTCTGGTTCAAGGCTGCCAGAGCTGCGAAATTGGATCCAAGC
ATATTGGACATAACGCTGCGTGGCTTGTCGGAAATAGTTCACGTAGGCCG
TCTAGCTGAAGGCCGTGATCATATTCTATGGGAGGCATCTTGGAAATCGA
GAGGTGAATCTCAATGTCCGTATCGAGATTATGTTAACCCTGACGAGGAC
GTTCCCTTTTTCTGTTTGTCATACAAACACGAGACTGCGAATGAGCCTCT
TGATGCAGATGAGTTGTTGGGTGCATTGCGAAAGGCAGCGCAGATGGCTT
TCAGCTTGTATGGGAAACCTTGCTTCAGAATATGGATCGACCAGCTCGTG
TTTGGAAGCACCCAGACATGGGTTGGCATAGGATTGATGCCCTTTTTGCT
GTTCCCAACTGTTTTTGCCTCAAAAGCAGAGCGAAACACGTCCAGTTCAT
GGATTTGTTTGGAGAAGATATGCTCACAGCTTATAGTGGGAGGGAACCTT
GAAACCCATCCTTGGGAGAGTGTCGCCTGTTCCAATACGCTGCTGGAGAG
CATCTCAGCTGTAGCTGAGATTGTTTCTAAACAAAAACAAGGCAATACAA
CGATTAGGCCCGATGACCTTGATTATCTTCAACTATGGGCGAAAGGTGTG
CTTTACGGAAAACGGGACGCTAGTGTTTTCGAAGGAATCAGAGAAGAAAT
TGGCCTACCTTGGAACCTATCTGAAGGGAAAAAGATGCACTATATAGCTC
TTTTCTCACTGAAGGTTGACAACAATTCGGTGTTGAGGAACTACTACAAT
CAACGGAATCAACAACTAAACAGTACAAGTGATTGGGATCTCAAGCATAT
TTTCTTTGAAGCACAGCCCAAGGTGACAGATATCGACGCAGTGGAGAATA
TTACCAGGGCGGTGGTCGTAGAGGGATCGAGCAGCACTTTGGTGCTTGTG
ACACAGTTCTCCAATGCAAACATGTACACTCTTCTGAAGGTACGGCATCA
GAGCAATGGCAAGATACGGGTTGAATCCATGTGCGCAATCAGTGAGGAAC
AGGCAGAAGCATTGGGTGTGTTAAAAGATGGAGGAGTCAAGATCGTGAGG
TTAGAAAGTCTGTGCTAA

protein sequence of Gcaud8376.t1

>Gcaud8376.t1 ID=Gcaud8376.t1|Name=Gcaud8376.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=556bp
MRKTKAAARQRRAIANKAFKLPLVKMFLKFIEGELDYVKTVRAVTFLIYF
WTMLGVFELPDLGCFAVFRCRGVRNVLGPIRKVISLLTEEQLVAMEIIGR
TRLTRDSLTTRIMQSEGVESKRMAAAYILFSRAIACYHTSFFEPFILGKK
VSVEDAIEKTTEEVTRQHDYLYTLAQEVANRGEGINFWFKAARAAKLDPS
ILDITLRGLSEIVHVGRLAEGRDHILWEASWKSRGESQCPYRDYVNPDED
VPFFCLSYKHETANEPLDADELLGALRKAAQMAFSLYGKPCFRIWIDQLV
FGSTQTWVGIGLMPFLLFPTVFASKAERNTSSSWICLEKICSQLIVGGNL
ETHPWESVACSNTLLESISAVAEIVSKQKQGNTTIRPDDLDYLQLWAKGV
LYGKRDASVFEGIREEIGLPWNLSEGKKMHYIALFSLKVDNNSVLRNYYN
QRNQQLNSTSDWDLKHIFFEAQPKVTDIDAVENITRAVVVEGSSSTLVLV
TQFSNANMYTLLKVRHQSNGKIRVESMCAISEEQAEALGVLKDGGVKIVR
LESLC*

mRNA from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8376.t1 ID=Gcaud8376.t1|Name=Gcaud8376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+ (Gracilaria caudata M_176_S67 male)
ATGCGTAAGACCAAAGCGGCCGCCCGGCAACGGAGAGCCATAGCTAACAA
GGCCTTTAAACTTCCTCTTGTAAAGATGTTCCTTAAGTTTATAGAGGGAG
AATTGGACTACGTGAAAACTGTGAGGGCAGTTACATTCCTTATTTACTTT
TGGACGATGCTTGGAGTGTTTGAACTCCCGGATCTCGGATGTTTTGCCGT
TTTCAGATGCAGAGGGGTGCGAAACGTGCTTGGGCCCATACGTAAGGTTA
TATCGCTCCTGACCGAGGAGCAGCTTGTAGCAATGGAAATAATTGGGAGG
ACAAGGTTAACTAGAGATTCCCTTACCACCAGGATTATGCAATCAGAAGG
TGTAGAGTCGAAGCGTATGGCCGCAGCATATATATTATTCTCAAGGGCAA
TAGCTTGTTATCACACTTCCTTTTTTGAGCCATTTATTTTGGGCAAAAAG
GTAAGCGTCGAGGATGCTATAGAGAAAACAACGGAAGAAGTAACTCGTCA
GCATGATTATCTGTACACCTTAGCACAAGAAGTGGCAAACAGGGGAGAGG
GAATCAACTTCTGGTTCAAGGCTGCCAGAGCTGCGAAATTGGATCCAAGC
ATATTGGACATAACGCTGCGTGGCTTGTCGGAAATAGTTCACGTAGGCCG
TCTAGCTGAAGGCCGTGATCATATTCTATGGGAGGCATCTTGGAAATCGA
GAGGTGAATCTCAATGTCCGTATCGAGATTATGTTAACCCTGACGAGGAC
GTTCCCTTTTTCTGTTTGTCATACAAACACGAGACTGCGAATGAGCCTCT
TGATGCAGATGAGTTGTTGGGTGCATTGCGAAAGGCAGCGCAGATGGCTT
TCAGCTTGTATGGGAAACCTTGCTTCAGAATATGGATCGACCAGCTCGTG
TTTGGAAGCACCCAGACATGGGTTGGCATAGGATTGATGCCCTTTTTGCT
GTTCCCAACTGTTTTTGCCTCAAAAGCAGAGCGAAACACGTCCAGTTCAT
GGATTTGTTTGGAGAAGATATGCTCACAGCTTATAGTGGGAGGGAACCTT
GAAACCCATCCTTGGGAGAGTGTCGCCTGTTCCAATACGCTGCTGGAGAG
CATCTCAGCTGTAGCTGAGATTGTTTCTAAACAAAAACAAGGCAATACAA
CGATTAGGCCCGATGACCTTGATTATCTTCAACTATGGGCGAAAGGTGTG
CTTTACGGAAAACGGGACGCTAGTGTTTTCGAAGGAATCAGAGAAGAAAT
TGGCCTACCTTGGAACCTATCTGAAGGGAAAAAGATGCACTATATAGCTC
TTTTCTCACTGAAGGTTGACAACAATTCGGTGTTGAGGAACTACTACAAT
CAACGGAATCAACAACTAAACAGTACAAGTGATTGGGATCTCAAGCATAT
TTTCTTTGAAGCACAGCCCAAGGTGACAGATATCGACGCAGTGGAGAATA
TTACCAGGGCGGTGGTCGTAGAGGGATCGAGCAGCACTTTGGTGCTTGTG
ACACAGTTCTCCAATGCAAACATGTACACTCTTCTGAAGGTACGGCATCA
GAGCAATGGCAAGATACGGGTTGAATCCATGTGCGCAATCAGTGAGGAAC
AGGCAGAAGCATTGGGTGTGTTAAAAGATGGAGGAGTCAAGATCGTGAGG
TTAGAAAGTCTGTGCTAA

Coding sequence (CDS) from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+

>Gcaud8376.t1 ID=Gcaud8376.t1|Name=Gcaud8376.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1668bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:6796..8463+ (Gracilaria caudata M_176_S67 male)
ATGCGTAAGACCAAAGCGGCCGCCCGGCAACGGAGAGCCATAGCTAACAA
GGCCTTTAAACTTCCTCTTGTAAAGATGTTCCTTAAGTTTATAGAGGGAG
AATTGGACTACGTGAAAACTGTGAGGGCAGTTACATTCCTTATTTACTTT
TGGACGATGCTTGGAGTGTTTGAACTCCCGGATCTCGGATGTTTTGCCGT
TTTCAGATGCAGAGGGGTGCGAAACGTGCTTGGGCCCATACGTAAGGTTA
TATCGCTCCTGACCGAGGAGCAGCTTGTAGCAATGGAAATAATTGGGAGG
ACAAGGTTAACTAGAGATTCCCTTACCACCAGGATTATGCAATCAGAAGG
TGTAGAGTCGAAGCGTATGGCCGCAGCATATATATTATTCTCAAGGGCAA
TAGCTTGTTATCACACTTCCTTTTTTGAGCCATTTATTTTGGGCAAAAAG
GTAAGCGTCGAGGATGCTATAGAGAAAACAACGGAAGAAGTAACTCGTCA
GCATGATTATCTGTACACCTTAGCACAAGAAGTGGCAAACAGGGGAGAGG
GAATCAACTTCTGGTTCAAGGCTGCCAGAGCTGCGAAATTGGATCCAAGC
ATATTGGACATAACGCTGCGTGGCTTGTCGGAAATAGTTCACGTAGGCCG
TCTAGCTGAAGGCCGTGATCATATTCTATGGGAGGCATCTTGGAAATCGA
GAGGTGAATCTCAATGTCCGTATCGAGATTATGTTAACCCTGACGAGGAC
GTTCCCTTTTTCTGTTTGTCATACAAACACGAGACTGCGAATGAGCCTCT
TGATGCAGATGAGTTGTTGGGTGCATTGCGAAAGGCAGCGCAGATGGCTT
TCAGCTTGTATGGGAAACCTTGCTTCAGAATATGGATCGACCAGCTCGTG
TTTGGAAGCACCCAGACATGGGTTGGCATAGGATTGATGCCCTTTTTGCT
GTTCCCAACTGTTTTTGCCTCAAAAGCAGAGCGAAACACGTCCAGTTCAT
GGATTTGTTTGGAGAAGATATGCTCACAGCTTATAGTGGGAGGGAACCTT
GAAACCCATCCTTGGGAGAGTGTCGCCTGTTCCAATACGCTGCTGGAGAG
CATCTCAGCTGTAGCTGAGATTGTTTCTAAACAAAAACAAGGCAATACAA
CGATTAGGCCCGATGACCTTGATTATCTTCAACTATGGGCGAAAGGTGTG
CTTTACGGAAAACGGGACGCTAGTGTTTTCGAAGGAATCAGAGAAGAAAT
TGGCCTACCTTGGAACCTATCTGAAGGGAAAAAGATGCACTATATAGCTC
TTTTCTCACTGAAGGTTGACAACAATTCGGTGTTGAGGAACTACTACAAT
CAACGGAATCAACAACTAAACAGTACAAGTGATTGGGATCTCAAGCATAT
TTTCTTTGAAGCACAGCCCAAGGTGACAGATATCGACGCAGTGGAGAATA
TTACCAGGGCGGTGGTCGTAGAGGGATCGAGCAGCACTTTGGTGCTTGTG
ACACAGTTCTCCAATGCAAACATGTACACTCTTCTGAAGGTACGGCATCA
GAGCAATGGCAAGATACGGGTTGAATCCATGTGCGCAATCAGTGAGGAAC
AGGCAGAAGCATTGGGTGTGTTAAAAGATGGAGGAGTCAAGATCGTGAGG
TTAGAAAGTCTGTGCTAA