Gcaud8372.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8372.t1
Unique NameGcaud8372.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length373
Homology
BLAST of Gcaud8372.t1 vs. uniprot
Match: A0A2V3J3Z8_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3Z8_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 8.870e-81
Identity = 152/274 (55.47%), Postives = 195/274 (71.17%), Query Frame = 0
Query:  101 LQLGHIDKSSHWMVP---RAKFVHQEKKSQRTSQREKQRQITAVGENLKMLRLMVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMXXXXXXXXXXXXXDICAFKEWLADRYERDRRIGVYVFNWDIP--TSKAPPVCVPLTESV--VQRETPVEWYKLSEESVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRAALFFILGAMSLALIGASARLFDKGYSPSGATTHSE-QNVSMPPPSGVDAHLYELDGAEALVRRSLQK 366
            LQLGHIDKS  WMVP    A+ + +EK S++ SQ+    QI+ VGENLKMLRLM+G+RSD+D+ TVMKW+D RAK DRQ+YD LQ+R GDDM       XXXXXX            YE+DRRIGVY+FNWDI   +S +  V VP+TE    +++E P+EW  LSE+S  AM   +DQ+Y +D   +YA+ ++FMGQIAEGL DRAAL F+LGAMS+ L  AS  L++ GYSPSG T H+E    +MPPPSGVDAHLY++ GAE+ V++S+QK
Sbjct:  356 LQLGHIDKSHRWMVPPRKNARRMRREKDSRKASQK----QISVVGENLKMLRLMIGQRSDEDVKTVMKWMDGRAKTDRQLYDVLQKRPGDDMRKVSEWVXXXXXXXXXXXXXXXXXXYEQDRRIGVYIFNWDIAPRSSTSVRVPVPVTEQQGGLEKEKPIEWLMLSEDSAKAMLRFDDQMYYSDSPTEYADVIHFMGQIAEGLVDRAALLFVLGAMSVGLAVASVSLYEDGYSPSGNTVHTEVDRANMPPPSGVDAHLYDMGGAESAVQQSVQK 625          
BLAST of Gcaud8372.t1 vs. uniprot
Match: R7QSZ3_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSZ3_CHOCR)

HSP 1 Score: 215 bits (548), Expect = 1.260e-61
Identity = 134/277 (48.38%), Postives = 177/277 (63.90%), Query Frame = 0
Query:  102 QLGHIDKSSHWMVP---RAKFVHQEKK-----SQRTSQREKQRQITAVGENLKMLRLMVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMXXXXXXXXXXXXXDICAFKEWLADRYERDRRIGVYVFNWDIPTSKA---PPVCVPLTESVVQR-ETPVEWYKLSEESVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRAALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNV--SMPPPSGVDAHLYELDGAEALVRRSL 364
            +LGHIDKS  WMVP   R K+    K+      +R   +   +QI+AVG+NL+MLRLM+ RRSD+D+ +VM+WL  RA+ADR++ DA+  RR +D       XXXXXXX             E+D RIGVY+FNWDIP SK+    PV V ++E      E P EW +LSEE  + ++  +DQL+  +   DY EG+YFMGQIAE LADRAAL  +L AM+  LIG S  LFD GYSPSG +T + +N+  +M  PSGVDA LYE  GAE++++  L
Sbjct:  242 ELGHIDKSRDWMVPPSSRNKWKRGTKQRAYAPGKRDRDKSNDKQISAVGKNLQMLRLMIERRSDEDVRSVMQWLSGRARADRRLADAISARRENDSRRVTEWXXXXXXXXXXXXXXXXXXXXEKDSRIGVYIFNWDIPLSKSMSSTPVPVRVSERRGNPVEKPAEWLRLSEEPRMGLQAFDDQLFHRENPTDYGEGIYFMGQIAENLADRAALVLVLSAMTFGLIGVSGYLFDLGYSPSGQSTQTARNIEGAMSKPSGVDAILYEEGGAESVIQSKL 518          
BLAST of Gcaud8372.t1 vs. uniprot
Match: UPI001E1E0105 (psbD mRNA maturation factor Nac2, chloroplastic-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0105)

HSP 1 Score: 150 bits (380), Expect = 1.380e-36
Identity = 112/272 (41.18%), Postives = 162/272 (59.56%), Query Frame = 0
Query:  106 IDKSSHWMVPRA---KFVHQE--KKSQRTSQREKQRQITAVGENLKMLRLMVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMXXXXXXXXXXXXXDICAFKEWLADRYERDRRIGVYVFNWDIPT------SKAPPVCVPLTESV--VQRETPVEWYKLSEESVVAMKDANDQLYCNDEGRDYA-----EGMYFMGQIAEGLADRAALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNVSMPPPSGVDAHL--YELDGAE 357
            ID S+ W VPR+   +  HQ   K +   ++ +++R++  VGENL+MLR ++ RRSD+D+ TVM+W++ RA+ +R + D +        XXXXXXXXXX   D+ AFKE++ DRYE+DR IGVY+FN DIP       SKA P  V  +      Q   P EWY L  ES  ++++ +D LY ++   D +     E + F+G++  GLA R+AL F L +++LA+ G    L  +GY+P    T S + V +PPPSGVDA L  Y L   E
Sbjct:  469 IDASNDWAVPRSSGPQAPHQRVRKPASSLARGKERRKLLQVGENLQMLRRLIERRSDEDLRTVMQWIERRAREERDLKDKVAAXXXXXXXXXXXXXXXXGEADVAAFKEFIEDRYEKDRLIGVYLFNLDIPPLVKKLGSKAMPAQVVASPEAGDEQAPKPQEWYVLEGESGRSLEEFDDLLYRSEGWVDTSRIEILEAIEFLGKVGSGLATRSALAFALCSLTLAITGMFIYLEYEGYTPRSLDTSSAE-VVLPPPSGVDAALAGYPLQSME 739          
BLAST of Gcaud8372.t1 vs. uniprot
Match: A0A1X6PFM5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFM5_PORUM)

HSP 1 Score: 137 bits (344), Expect = 3.540e-32
Identity = 79/217 (36.41%), Postives = 117/217 (53.92%), Query Frame = 0
Query:  137 QITAVGENLKMLRLMVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMXXXXXXXXXXXXXDICAFKEWLADRYERDRRIGVYVFNWDIPTSKAPPVCVPLTESVVQRETPVEWYKLSEE-SVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRAALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNVSMPPPSGVDAHLYE 352
            Q++ +  NL+ML+ +VG+R+D+D  T++ WLD+RA+AD  ++  L RR   D              D+ AF +W+A RYE DRRIGVYVF  DIP S   P   P+       E PVEW +L E  S + + + +++LY  +  R+    M ++G +AE LA+RAAL   L  +SL ++ AS  L      P           ++ P  GVDA L +
Sbjct:  349 QLSNISTNLRMLKKLVGQRTDEDTRTLLAWLDSRAQADASLFTRLSRRGEADSQKLMQWAARRSANDVNAFSDWVARRYEEDRRIGVYVFGLDIPRSARKPATTPVKVGAAVVEKPVEWLRLKEAPSRMTLAEFDERLYTEETTREAVWVMVWLGNLAESLANRAALTSALAGISLLVVAASLHLMAVTEVP-----ERPPQAAVRPAEGVDAKLIQ 560          
The following BLAST results are available for this feature:
BLAST of Gcaud8372.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J3Z8_9FLOR8.870e-8155.47PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QSZ3_CHOCR1.260e-6148.38TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
UPI001E1E01051.380e-3641.18psbD mRNA maturation factor Nac2, chloroplastic-li... [more]
A0A1X6PFM5_PORUM3.540e-3236.41Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 2..34
e-value: 0.87
score: 18.6
coord: 70..102
e-value: 18.0
score: 13.6
coord: 36..68
e-value: 0.15
score: 21.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..137
e-value: 3.6E-19
score: 71.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..109
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 5..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..299
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 300..321
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 322..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1588_length_9614_cov_3.697994contigNODE_1588_length_9614_cov_3.697994:4246..5364 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8372.t1Gcaud8372.t1Gracilaria caudata M_176_S67 malemRNANODE_1588_length_9614_cov_3.697994 4246..5364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MNKFAEARRLFTHALHINPRSVPTYQAYALFAARRGSLQLARELFEKGAQ
IDPLHAPIWHAWAVMEQNERRYDVARELFQKGVDAAPHNTPMLRAWASME
LQLGHIDKSSHWMVPRAKFVHQEKKSQRTSQREKQRQITAVGENLKMLRL
MVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMRKVSEWVARRS
ASDICAFKEWLADRYERDRRIGVYVFNWDIPTSKAPPVCVPLTESVVQRE
TPVEWYKLSEESVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRA
ALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNVSMPPPSGVDAHL
YELDGAEALVRRSLQKMHSSDK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like