Gcaud8372.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8372.t1
Unique Name	Gcaud8372.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1588_length_9614_cov_3.697994	contig	NODE_1588_length_9614_cov_3.697994:4246..5364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ412CT
PFAMs	TPR_1,TPR_14,TPR_16,TPR_19,TPR_2,TPR_6,TPR_8
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12869
KEGG Pathway	ko03040,map03040
KEGG Module	M00355
Evalue	8.97e-12
EggNOG OGs	COG0457@1\|root,KOG1124@2759\|Eukaryota
Description	cellular component assembly
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03036,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8372	Gcaud8372	Gracilaria caudata M_176_S67 male	gene	NODE_1588_length_9614_cov_3.697994 4246..5364 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8372.t1.start1	Gcaud8372.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1588_length_9614_cov_3.697994 4246..4248 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8372.t1.CDS1	Gcaud8372.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1588_length_9614_cov_3.697994 4246..5364 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8372.t1.exon1	Gcaud8372.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1588_length_9614_cov_3.697994 4246..5364 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8372.t1.stop1	Gcaud8372.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1588_length_9614_cov_3.697994 5362..5364 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8372.t1	Gcaud8372.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1588_length_9614_cov_3.697994 4246..5364 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+
coding sequence from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+

mRNA sequence

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MNKFAEARRLFTHALHINPRSVPTYQAYALFAARRGSLQLARELFEKGAQ
IDPLHAPIWHAWAVMEQNERRYDVARELFQKGVDAAPHNTPMLRAWASME
LQLGHIDKSSHWMVPRAKFVHQEKKSQRTSQREKQRQITAVGENLKMLRL
MVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMRKVSEWVARRS
ASDICAFKEWLADRYERDRRIGVYVFNWDIPTSKAPPVCVPLTESVVQRE
TPVEWYKLSEESVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRA
ALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNVSMPPPSGVDAHL
YELDGAEALVRRSLQKMHSSDK*

spliced messenger RNA

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGTTCGCGGAGGCGCGTCGACTGTTCACGCACGCGCTGCACAT
CAACCCGCGCTCCGTGCCCACGTACCAGGCGTACGCGCTGTTTGCGGCGC
GACGCGGCAGCTTGCAGCTGGCGCGCGAGCTGTTTGAGAAGGGCGCGCAG
ATCGACCCGCTGCACGCGCCCATCTGGCACGCGTGGGCGGTCATGGAGCA
GAACGAGCGCCGCTACGACGTGGCGCGGGAGCTGTTTCAGAAGGGCGTGG
ATGCCGCGCCGCACAACACGCCCATGCTCAGGGCGTGGGCGAGCATGGAG
CTGCAATTGGGCCACATCGATAAGAGCTCTCACTGGATGGTTCCGCGCGC
CAAGTTTGTTCACCAGGAAAAAAAGAGCCAGCGCACCTCGCAAAGGGAAA
AGCAGAGACAGATCACTGCGGTGGGGGAGAACTTGAAGATGCTCAGGCTC
ATGGTGGGCAGACGCTCCGACGACGACATGAACACCGTCATGAAATGGCT
GGACGCGCGCGCAAAAGCGGACCGCCAGATATACGACGCGCTGCAGAGGC
GCAGGGGAGATGACATGAGAAAGGTGTCGGAATGGGTGGCCAGACGCTCC
GCGAGCGATATTTGCGCTTTCAAAGAGTGGCTGGCCGATCGTTACGAGCG
AGACCGAAGAATCGGCGTGTATGTGTTCAACTGGGACATTCCCACCTCCA
AAGCGCCGCCGGTGTGCGTGCCGCTCACCGAAAGCGTGGTGCAGCGCGAA
ACACCTGTGGAGTGGTACAAGCTCTCAGAGGAATCTGTGGTGGCGATGAA
GGACGCCAACGATCAGTTGTACTGCAATGATGAGGGGCGCGATTACGCTG
AGGGCATGTACTTTATGGGTCAGATTGCTGAGGGACTTGCTGATCGCGCC
GCGCTGTTTTTCATTCTGGGTGCGATGTCGCTTGCGTTGATTGGCGCATC
AGCGCGCTTGTTTGACAAGGGCTACTCGCCGTCCGGCGCTACCACGCACA
GCGAGCAAAACGTGAGTATGCCACCGCCTTCTGGCGTGGATGCCCATCTT
TATGAGCTGGATGGAGCGGAAGCGCTTGTTCGTCGCTCTCTTCAAAAAAT
GCACTCAAGTGATAAATGA

protein sequence of Gcaud8372.t1

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MNKFAEARRLFTHALHINPRSVPTYQAYALFAARRGSLQLARELFEKGAQ
IDPLHAPIWHAWAVMEQNERRYDVARELFQKGVDAAPHNTPMLRAWASME
LQLGHIDKSSHWMVPRAKFVHQEKKSQRTSQREKQRQITAVGENLKMLRL
MVGRRSDDDMNTVMKWLDARAKADRQIYDALQRRRGDDMRKVSEWVARRS
ASDICAFKEWLADRYERDRRIGVYVFNWDIPTSKAPPVCVPLTESVVQRE
TPVEWYKLSEESVVAMKDANDQLYCNDEGRDYAEGMYFMGQIAEGLADRA
ALFFILGAMSLALIGASARLFDKGYSPSGATTHSEQNVSMPPPSGVDAHL
YELDGAEALVRRSLQKMHSSDK*

mRNA from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+ (Gracilaria caudata M_176_S67 male)
ATGAACAAGTTCGCGGAGGCGCGTCGACTGTTCACGCACGCGCTGCACAT
CAACCCGCGCTCCGTGCCCACGTACCAGGCGTACGCGCTGTTTGCGGCGC
GACGCGGCAGCTTGCAGCTGGCGCGCGAGCTGTTTGAGAAGGGCGCGCAG
ATCGACCCGCTGCACGCGCCCATCTGGCACGCGTGGGCGGTCATGGAGCA
GAACGAGCGCCGCTACGACGTGGCGCGGGAGCTGTTTCAGAAGGGCGTGG
ATGCCGCGCCGCACAACACGCCCATGCTCAGGGCGTGGGCGAGCATGGAG
CTGCAATTGGGCCACATCGATAAGAGCTCTCACTGGATGGTTCCGCGCGC
CAAGTTTGTTCACCAGGAAAAAAAGAGCCAGCGCACCTCGCAAAGGGAAA
AGCAGAGACAGATCACTGCGGTGGGGGAGAACTTGAAGATGCTCAGGCTC
ATGGTGGGCAGACGCTCCGACGACGACATGAACACCGTCATGAAATGGCT
GGACGCGCGCGCAAAAGCGGACCGCCAGATATACGACGCGCTGCAGAGGC
GCAGGGGAGATGACATGAGAAAGGTGTCGGAATGGGTGGCCAGACGCTCC
GCGAGCGATATTTGCGCTTTCAAAGAGTGGCTGGCCGATCGTTACGAGCG
AGACCGAAGAATCGGCGTGTATGTGTTCAACTGGGACATTCCCACCTCCA
AAGCGCCGCCGGTGTGCGTGCCGCTCACCGAAAGCGTGGTGCAGCGCGAA
ACACCTGTGGAGTGGTACAAGCTCTCAGAGGAATCTGTGGTGGCGATGAA
GGACGCCAACGATCAGTTGTACTGCAATGATGAGGGGCGCGATTACGCTG
AGGGCATGTACTTTATGGGTCAGATTGCTGAGGGACTTGCTGATCGCGCC
GCGCTGTTTTTCATTCTGGGTGCGATGTCGCTTGCGTTGATTGGCGCATC
AGCGCGCTTGTTTGACAAGGGCTACTCGCCGTCCGGCGCTACCACGCACA
GCGAGCAAAACGTGAGTATGCCACCGCCTTCTGGCGTGGATGCCCATCTT
TATGAGCTGGATGGAGCGGAAGCGCTTGTTCGTCGCTCTCTTCAAAAAAT
GCACTCAAGTGATAAATGA

Coding sequence (CDS) from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+

>Gcaud8372.t1 ID=Gcaud8372.t1|Name=Gcaud8372.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:4246..5364+ (Gracilaria caudata M_176_S67 male)
ATGAACAAGTTCGCGGAGGCGCGTCGACTGTTCACGCACGCGCTGCACAT
CAACCCGCGCTCCGTGCCCACGTACCAGGCGTACGCGCTGTTTGCGGCGC
GACGCGGCAGCTTGCAGCTGGCGCGCGAGCTGTTTGAGAAGGGCGCGCAG
ATCGACCCGCTGCACGCGCCCATCTGGCACGCGTGGGCGGTCATGGAGCA
GAACGAGCGCCGCTACGACGTGGCGCGGGAGCTGTTTCAGAAGGGCGTGG
ATGCCGCGCCGCACAACACGCCCATGCTCAGGGCGTGGGCGAGCATGGAG
CTGCAATTGGGCCACATCGATAAGAGCTCTCACTGGATGGTTCCGCGCGC
CAAGTTTGTTCACCAGGAAAAAAAGAGCCAGCGCACCTCGCAAAGGGAAA
AGCAGAGACAGATCACTGCGGTGGGGGAGAACTTGAAGATGCTCAGGCTC
ATGGTGGGCAGACGCTCCGACGACGACATGAACACCGTCATGAAATGGCT
GGACGCGCGCGCAAAAGCGGACCGCCAGATATACGACGCGCTGCAGAGGC
GCAGGGGAGATGACATGAGAAAGGTGTCGGAATGGGTGGCCAGACGCTCC
GCGAGCGATATTTGCGCTTTCAAAGAGTGGCTGGCCGATCGTTACGAGCG
AGACCGAAGAATCGGCGTGTATGTGTTCAACTGGGACATTCCCACCTCCA
AAGCGCCGCCGGTGTGCGTGCCGCTCACCGAAAGCGTGGTGCAGCGCGAA
ACACCTGTGGAGTGGTACAAGCTCTCAGAGGAATCTGTGGTGGCGATGAA
GGACGCCAACGATCAGTTGTACTGCAATGATGAGGGGCGCGATTACGCTG
AGGGCATGTACTTTATGGGTCAGATTGCTGAGGGACTTGCTGATCGCGCC
GCGCTGTTTTTCATTCTGGGTGCGATGTCGCTTGCGTTGATTGGCGCATC
AGCGCGCTTGTTTGACAAGGGCTACTCGCCGTCCGGCGCTACCACGCACA
GCGAGCAAAACGTGAGTATGCCACCGCCTTCTGGCGTGGATGCCCATCTT
TATGAGCTGGATGGAGCGGAAGCGCTTGTTCGTCGCTCTCTTCAAAAAAT
GCACTCAAGTGATAAATGA