Gcaud8373.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8373.t1
Unique Name	Gcaud8373.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	256

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1588_length_9614_cov_3.697994	contig	NODE_1588_length_9614_cov_3.697994:5391..6158 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1487953.JMKF01000065_gene4581
PFAMs	DUF2064,Glycos_transf_2
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K09931
Evalue	9.6e-63
EggNOG OGs	COG1216@1\|root,COG3222@1\|root,COG1216@2\|Bacteria,COG3222@2\|Bacteria,1G0X3@1117\|Cyanobacteria,1HHXX@1150\|Oscillatoriales
Description	Glycosyl transferase family 2
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8373	Gcaud8373	Gracilaria caudata M_176_S67 male	gene	NODE_1588_length_9614_cov_3.697994 5391..6158 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8373.t1.stop1	Gcaud8373.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1588_length_9614_cov_3.697994 5391..5393 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8373.t1.CDS1	Gcaud8373.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1588_length_9614_cov_3.697994 5391..6158 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8373.t1.exon1	Gcaud8373.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1588_length_9614_cov_3.697994 5391..6158 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8373.t1.start1	Gcaud8373.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1588_length_9614_cov_3.697994 6156..6158 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8373.t1	Gcaud8373.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1588_length_9614_cov_3.697994 5391..6158 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158-
coding sequence from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158-

mRNA sequence

>Gcaud8373.t1 ID=Gcaud8373.t1|Name=Gcaud8373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MFSFLGNFFLAAPHTTIIIPTYNESSTISATIHAIKQHRRAAVQIIVCDG
YSQDDTAVKARRAGAKVLRVRGGRAQQLNKGALLARAHNLLFLHADTKVP
PAFDSEIARVLAQRDVIAGAFRLHIDSKRFGIQCVQTVANWRSRLFQRPY
GDQGLFITKQNFRHVGGYPPMPFLEDYEMVRRLSRSGRVRTANSSVSTNA
RRWETLGVAQTTVMNQLVLAAYHLGMKPSTLAKWYRGAVRNGVKSTQKRA
TAPAP*

spliced messenger RNA

>Gcaud8373.t1 ID=Gcaud8373.t1|Name=Gcaud8373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCTTTTCTGGGCAACTTTTTCCTCGCCGCCCCTCACACCACCAT
CATCATTCCCACGTACAATGAGTCCAGCACAATCTCGGCCACCATCCACG
CGATCAAGCAGCACCGCCGCGCCGCAGTACAGATCATCGTGTGCGACGGC
TACTCGCAGGACGACACCGCCGTCAAGGCCAGAAGAGCCGGCGCAAAGGT
GCTGCGCGTGCGCGGCGGTCGTGCGCAGCAGCTCAACAAAGGCGCCTTGC
TCGCCAGAGCGCACAACCTACTGTTCTTGCACGCCGACACCAAAGTGCCG
CCCGCCTTCGACAGCGAGATCGCGCGAGTGCTCGCGCAGCGCGACGTGAT
AGCCGGCGCGTTTCGTCTGCACATTGACTCCAAGCGCTTTGGCATCCAAT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTGTTTCAGAGACCGTAC
GGTGATCAAGGGCTGTTCATCACGAAGCAGAACTTCCGCCACGTGGGCGG
CTACCCGCCCATGCCATTCCTTGAGGACTACGAAATGGTGCGCCGGCTGT
CGCGAAGCGGACGCGTCAGAACGGCCAACTCGAGCGTGAGCACCAATGCG
CGCAGGTGGGAGACGCTGGGCGTGGCTCAGACCACGGTGATGAACCAGCT
AGTTTTGGCCGCCTACCATCTCGGCATGAAGCCCAGCACGCTGGCCAAAT
GGTACCGAGGCGCTGTTCGCAACGGCGTCAAGTCCACACAAAAAAGAGCG
ACAGCACCCGCGCCATGA

protein sequence of Gcaud8373.t1

>Gcaud8373.t1 ID=Gcaud8373.t1|Name=Gcaud8373.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MFSFLGNFFLAAPHTTIIIPTYNESSTISATIHAIKQHRRAAVQIIVCDG
YSQDDTAVKARRAGAKVLRVRGGRAQQLNKGALLARAHNLLFLHADTKVP
PAFDSEIARVLAQRDVIAGAFRLHIDSKRFGIQCVQTVANWRSRLFQRPY
GDQGLFITKQNFRHVGGYPPMPFLEDYEMVRRLSRSGRVRTANSSVSTNA
RRWETLGVAQTTVMNQLVLAAYHLGMKPSTLAKWYRGAVRNGVKSTQKRA
TAPAP*

mRNA from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8373.t1 ID=Gcaud8373.t1|Name=Gcaud8373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158- (Gracilaria caudata M_176_S67 male)
ATGTTCTCTTTTCTGGGCAACTTTTTCCTCGCCGCCCCTCACACCACCAT
CATCATTCCCACGTACAATGAGTCCAGCACAATCTCGGCCACCATCCACG
CGATCAAGCAGCACCGCCGCGCCGCAGTACAGATCATCGTGTGCGACGGC
TACTCGCAGGACGACACCGCCGTCAAGGCCAGAAGAGCCGGCGCAAAGGT
GCTGCGCGTGCGCGGCGGTCGTGCGCAGCAGCTCAACAAAGGCGCCTTGC
TCGCCAGAGCGCACAACCTACTGTTCTTGCACGCCGACACCAAAGTGCCG
CCCGCCTTCGACAGCGAGATCGCGCGAGTGCTCGCGCAGCGCGACGTGAT
AGCCGGCGCGTTTCGTCTGCACATTGACTCCAAGCGCTTTGGCATCCAAT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTGTTTCAGAGACCGTAC
GGTGATCAAGGGCTGTTCATCACGAAGCAGAACTTCCGCCACGTGGGCGG
CTACCCGCCCATGCCATTCCTTGAGGACTACGAAATGGTGCGCCGGCTGT
CGCGAAGCGGACGCGTCAGAACGGCCAACTCGAGCGTGAGCACCAATGCG
CGCAGGTGGGAGACGCTGGGCGTGGCTCAGACCACGGTGATGAACCAGCT
AGTTTTGGCCGCCTACCATCTCGGCATGAAGCCCAGCACGCTGGCCAAAT
GGTACCGAGGCGCTGTTCGCAACGGCGTCAAGTCCACACAAAAAAGAGCG
ACAGCACCCGCGCCATGA

Coding sequence (CDS) from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158-

>Gcaud8373.t1 ID=Gcaud8373.t1|Name=Gcaud8373.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:5391..6158- (Gracilaria caudata M_176_S67 male)
ATGTTCTCTTTTCTGGGCAACTTTTTCCTCGCCGCCCCTCACACCACCAT
CATCATTCCCACGTACAATGAGTCCAGCACAATCTCGGCCACCATCCACG
CGATCAAGCAGCACCGCCGCGCCGCAGTACAGATCATCGTGTGCGACGGC
TACTCGCAGGACGACACCGCCGTCAAGGCCAGAAGAGCCGGCGCAAAGGT
GCTGCGCGTGCGCGGCGGTCGTGCGCAGCAGCTCAACAAAGGCGCCTTGC
TCGCCAGAGCGCACAACCTACTGTTCTTGCACGCCGACACCAAAGTGCCG
CCCGCCTTCGACAGCGAGATCGCGCGAGTGCTCGCGCAGCGCGACGTGAT
AGCCGGCGCGTTTCGTCTGCACATTGACTCCAAGCGCTTTGGCATCCAAT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTGTTTCAGAGACCGTAC
GGTGATCAAGGGCTGTTCATCACGAAGCAGAACTTCCGCCACGTGGGCGG
CTACCCGCCCATGCCATTCCTTGAGGACTACGAAATGGTGCGCCGGCTGT
CGCGAAGCGGACGCGTCAGAACGGCCAACTCGAGCGTGAGCACCAATGCG
CGCAGGTGGGAGACGCTGGGCGTGGCTCAGACCACGGTGATGAACCAGCT
AGTTTTGGCCGCCTACCATCTCGGCATGAAGCCCAGCACGCTGGCCAAAT
GGTACCGAGGCGCTGTTCGCAACGGCGTCAAGTCCACACAAAAAAGAGCG
ACAGCACCCGCGCCATGA