Gcaud8374.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8374.t1
Unique Name	Gcaud8374.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1588_length_9614_cov_3.697994	contig	NODE_1588_length_9614_cov_3.697994:6756..8651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707863.1
Preferred name	SDH1
PFAMs	FAD_binding_2,Succ_DH_flav_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00045
KEGG ko	ko:K00234
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00009,M00011,M00148
GOs	GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017076,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0030312,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0046956,GO:0050896,GO:0050897,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990204
Evalue	0.0
EggNOG OGs	COG1053@1\|root,KOG2403@2759\|Eukaryota
EC	1.3.5.1
Description	anaerobic respiration
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8374	Gcaud8374	Gracilaria caudata M_176_S67 male	gene	NODE_1588_length_9614_cov_3.697994 6756..8651 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8374.t1.start1	Gcaud8374.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1588_length_9614_cov_3.697994 6756..6758 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8374.t1.CDS1	Gcaud8374.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1588_length_9614_cov_3.697994 6756..8651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8374.t1.exon1	Gcaud8374.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1588_length_9614_cov_3.697994 6756..8651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8374.t1.stop1	Gcaud8374.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1588_length_9614_cov_3.697994 8649..8651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8374.t1	Gcaud8374.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1588_length_9614_cov_3.697994 6756..8651 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+
coding sequence from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+

mRNA sequence

>Gcaud8374.t1 ID=Gcaud8374.t1|Name=Gcaud8374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=632bp
MLRSAPSRLLRSFRATKRHLSTNTTKVGGYEVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPDTIIELENYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGVIALCMEDGSLHRFNAHATIIATGGYGKCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTMEIREGRGVGKDKDHIFLHLDHLEP
SVLKERLPGITETAKVFAGVDVHKDPIPVLPTVHYNMGGIPTNWRGEVIT
LKDGDPNYVIPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPADAGEQAIADMDRVRYADGELRTSEIRLNMQKIMQNH
AAVFRSDESLKEGCEKMDACYESFSSVKTSDRDMIFNTDMIETLELRNLL
QNALVTIHSAEARKESRGAHAREDFTERDDENWMKHTLGWVCEHTEKKYG
RGYVGIEYRPVINTSLDDAEQTAFPPAKRVY*

spliced messenger RNA

>Gcaud8374.t1 ID=Gcaud8374.t1|Name=Gcaud8374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTAGCGCGCCTTCTCGACTCCTGAGAAGCTTCCGCGCCACGAA
GCGCCACTTGTCCACAAACACCACCAAAGTGGGCGGTTATGAAGTCATTG
ATCATGAAGTGGACGTGTGCGTCGTTGGTGCCGGAGGCGCAGGACTTCGA
GCCACGATCGGAGCGTGCGAAGCTGGACTGAAAACTGCGTGCGTCACCAA
GCTATTCCCCACTCGTTCGCACACAGTTGCCGCGCAAGGCGGCATCAATG
GCGCGTTGGGGAACATGACCAAGGACGACTGGCGATGGCACATGTATGAT
ACCGTCAAGGGCTCGGACTGGCTTGGCGATCAGGACGCCATCCATTACAT
GTGCCGCGAGGCGCCAGACACCATCATTGAACTGGAGAACTACGGTGTGC
CGTTTAGTCGTACGGAAGATGGACTGATTTATCAGCGTGCGTTTGGCGGC
CAGTCTCTTGATTTCGGAAAGGGTGGCCAGGCCTACCGCTGTGCGGCGGC
AGCTGATCGCACTGGACATGCCATGCTGCACACTCTGTACGGTCAGTCTC
TCAAGCATGACGCCAACTTTTTTGTGGAATACTTTGCACTAGATCTTATC
ATGGATCCGCACGACGGAAGTTGTCGTGGAGTCATCGCACTGTGCATGGA
GGATGGATCTCTTCATCGCTTCAACGCCCATGCCACCATCATTGCCACCG
GTGGCTATGGAAAATGTTACTTCAGTGCAACCTCTGCGCATACCTGTACG
GGTGACGGAAACGCCATGGTCGCACGCGCTGGAATCCCTTTGCAAGACTT
GGAGTTTGTGCAGTTCCACCCTACGGGTATCTATGGTGCCGGCTGTCTTA
TCACGGAGGGCGCCCGTGGCGAAGGAGGTTTCCTCAAAAACGCAAACGGA
GAACGATTCATGGAACGATACGCACCGTCGGCCAAGGACCTGGCTTCACG
TGATGTGGTGTCTCGTTCAATGACAATGGAAATTCGAGAAGGTCGTGGAG
TTGGCAAAGACAAGGATCACATCTTCCTGCATCTGGATCACCTGGAACCA
TCAGTGCTGAAGGAACGCCTACCAGGCATTACGGAAACTGCAAAGGTGTT
TGCGGGCGTTGACGTGCACAAGGACCCTATCCCGGTGTTACCTACAGTGC
ACTACAACATGGGTGGTATTCCGACCAATTGGCGCGGTGAGGTTATTACC
CTAAAGGATGGCGACCCGAACTACGTGATCCCTGGACTGTTGGCAGCCGG
AGAGGCGGCGTGCGCAAGCGTGCACGGCGCAAACCGACTGGGAGCAAATT
CGCTACTGGATATTGTGGTGTTCGGACGCGCAACAGCCAAACGAGTAGCC
GAACTTGTAAAGCCCAACAGCGCGCATAGACCTTTGCCAGCCGACGCTGG
GGAACAGGCTATCGCTGACATGGACAGGGTGCGGTACGCGGATGGGGAAT
TGCGCACGTCGGAGATTCGGCTGAATATGCAAAAGATCATGCAGAACCAC
GCTGCAGTGTTCCGTTCCGATGAAAGTCTGAAAGAAGGCTGTGAGAAGAT
GGACGCATGTTATGAAAGTTTCTCGTCGGTGAAGACCAGCGACCGAGACA
TGATATTTAATACGGACATGATTGAGACGTTGGAGTTAAGGAATCTGTTG
CAAAATGCGTTGGTTACAATACACAGTGCCGAGGCGCGAAAGGAGAGCCG
TGGAGCGCACGCAAGGGAGGACTTCACGGAGAGGGACGATGAAAATTGGA
TGAAGCACACGCTGGGGTGGGTGTGCGAGCACACGGAGAAGAAGTACGGG
CGCGGATATGTGGGGATTGAGTACCGACCGGTTATCAACACCAGCCTGGA
CGACGCGGAGCAGACTGCGTTCCCTCCCGCCAAGCGCGTGTACTAG

protein sequence of Gcaud8374.t1

>Gcaud8374.t1 ID=Gcaud8374.t1|Name=Gcaud8374.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=632bp
MLRSAPSRLLRSFRATKRHLSTNTTKVGGYEVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPDTIIELENYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGVIALCMEDGSLHRFNAHATIIATGGYGKCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTMEIREGRGVGKDKDHIFLHLDHLEP
SVLKERLPGITETAKVFAGVDVHKDPIPVLPTVHYNMGGIPTNWRGEVIT
LKDGDPNYVIPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPADAGEQAIADMDRVRYADGELRTSEIRLNMQKIMQNH
AAVFRSDESLKEGCEKMDACYESFSSVKTSDRDMIFNTDMIETLELRNLL
QNALVTIHSAEARKESRGAHAREDFTERDDENWMKHTLGWVCEHTEKKYG
RGYVGIEYRPVINTSLDDAEQTAFPPAKRVY*

mRNA from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8374.t1 ID=Gcaud8374.t1|Name=Gcaud8374.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+ (Gracilaria caudata M_176_S67 male)
ATGTTGCGTAGCGCGCCTTCTCGACTCCTGAGAAGCTTCCGCGCCACGAA
GCGCCACTTGTCCACAAACACCACCAAAGTGGGCGGTTATGAAGTCATTG
ATCATGAAGTGGACGTGTGCGTCGTTGGTGCCGGAGGCGCAGGACTTCGA
GCCACGATCGGAGCGTGCGAAGCTGGACTGAAAACTGCGTGCGTCACCAA
GCTATTCCCCACTCGTTCGCACACAGTTGCCGCGCAAGGCGGCATCAATG
GCGCGTTGGGGAACATGACCAAGGACGACTGGCGATGGCACATGTATGAT
ACCGTCAAGGGCTCGGACTGGCTTGGCGATCAGGACGCCATCCATTACAT
GTGCCGCGAGGCGCCAGACACCATCATTGAACTGGAGAACTACGGTGTGC
CGTTTAGTCGTACGGAAGATGGACTGATTTATCAGCGTGCGTTTGGCGGC
CAGTCTCTTGATTTCGGAAAGGGTGGCCAGGCCTACCGCTGTGCGGCGGC
AGCTGATCGCACTGGACATGCCATGCTGCACACTCTGTACGGTCAGTCTC
TCAAGCATGACGCCAACTTTTTTGTGGAATACTTTGCACTAGATCTTATC
ATGGATCCGCACGACGGAAGTTGTCGTGGAGTCATCGCACTGTGCATGGA
GGATGGATCTCTTCATCGCTTCAACGCCCATGCCACCATCATTGCCACCG
GTGGCTATGGAAAATGTTACTTCAGTGCAACCTCTGCGCATACCTGTACG
GGTGACGGAAACGCCATGGTCGCACGCGCTGGAATCCCTTTGCAAGACTT
GGAGTTTGTGCAGTTCCACCCTACGGGTATCTATGGTGCCGGCTGTCTTA
TCACGGAGGGCGCCCGTGGCGAAGGAGGTTTCCTCAAAAACGCAAACGGA
GAACGATTCATGGAACGATACGCACCGTCGGCCAAGGACCTGGCTTCACG
TGATGTGGTGTCTCGTTCAATGACAATGGAAATTCGAGAAGGTCGTGGAG
TTGGCAAAGACAAGGATCACATCTTCCTGCATCTGGATCACCTGGAACCA
TCAGTGCTGAAGGAACGCCTACCAGGCATTACGGAAACTGCAAAGGTGTT
TGCGGGCGTTGACGTGCACAAGGACCCTATCCCGGTGTTACCTACAGTGC
ACTACAACATGGGTGGTATTCCGACCAATTGGCGCGGTGAGGTTATTACC
CTAAAGGATGGCGACCCGAACTACGTGATCCCTGGACTGTTGGCAGCCGG
AGAGGCGGCGTGCGCAAGCGTGCACGGCGCAAACCGACTGGGAGCAAATT
CGCTACTGGATATTGTGGTGTTCGGACGCGCAACAGCCAAACGAGTAGCC
GAACTTGTAAAGCCCAACAGCGCGCATAGACCTTTGCCAGCCGACGCTGG
GGAACAGGCTATCGCTGACATGGACAGGGTGCGGTACGCGGATGGGGAAT
TGCGCACGTCGGAGATTCGGCTGAATATGCAAAAGATCATGCAGAACCAC
GCTGCAGTGTTCCGTTCCGATGAAAGTCTGAAAGAAGGCTGTGAGAAGAT
GGACGCATGTTATGAAAGTTTCTCGTCGGTGAAGACCAGCGACCGAGACA
TGATATTTAATACGGACATGATTGAGACGTTGGAGTTAAGGAATCTGTTG
CAAAATGCGTTGGTTACAATACACAGTGCCGAGGCGCGAAAGGAGAGCCG
TGGAGCGCACGCAAGGGAGGACTTCACGGAGAGGGACGATGAAAATTGGA
TGAAGCACACGCTGGGGTGGGTGTGCGAGCACACGGAGAAGAAGTACGGG
CGCGGATATGTGGGGATTGAGTACCGACCGGTTATCAACACCAGCCTGGA
CGACGCGGAGCAGACTGCGTTCCCTCCCGCCAAGCGCGTGTACTAG

Coding sequence (CDS) from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+

>Gcaud8374.t1 ID=Gcaud8374.t1|Name=Gcaud8374.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1896bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:6756..8651+ (Gracilaria caudata M_176_S67 male)
ATGTTGCGTAGCGCGCCTTCTCGACTCCTGAGAAGCTTCCGCGCCACGAA
GCGCCACTTGTCCACAAACACCACCAAAGTGGGCGGTTATGAAGTCATTG
ATCATGAAGTGGACGTGTGCGTCGTTGGTGCCGGAGGCGCAGGACTTCGA
GCCACGATCGGAGCGTGCGAAGCTGGACTGAAAACTGCGTGCGTCACCAA
GCTATTCCCCACTCGTTCGCACACAGTTGCCGCGCAAGGCGGCATCAATG
GCGCGTTGGGGAACATGACCAAGGACGACTGGCGATGGCACATGTATGAT
ACCGTCAAGGGCTCGGACTGGCTTGGCGATCAGGACGCCATCCATTACAT
GTGCCGCGAGGCGCCAGACACCATCATTGAACTGGAGAACTACGGTGTGC
CGTTTAGTCGTACGGAAGATGGACTGATTTATCAGCGTGCGTTTGGCGGC
CAGTCTCTTGATTTCGGAAAGGGTGGCCAGGCCTACCGCTGTGCGGCGGC
AGCTGATCGCACTGGACATGCCATGCTGCACACTCTGTACGGTCAGTCTC
TCAAGCATGACGCCAACTTTTTTGTGGAATACTTTGCACTAGATCTTATC
ATGGATCCGCACGACGGAAGTTGTCGTGGAGTCATCGCACTGTGCATGGA
GGATGGATCTCTTCATCGCTTCAACGCCCATGCCACCATCATTGCCACCG
GTGGCTATGGAAAATGTTACTTCAGTGCAACCTCTGCGCATACCTGTACG
GGTGACGGAAACGCCATGGTCGCACGCGCTGGAATCCCTTTGCAAGACTT
GGAGTTTGTGCAGTTCCACCCTACGGGTATCTATGGTGCCGGCTGTCTTA
TCACGGAGGGCGCCCGTGGCGAAGGAGGTTTCCTCAAAAACGCAAACGGA
GAACGATTCATGGAACGATACGCACCGTCGGCCAAGGACCTGGCTTCACG
TGATGTGGTGTCTCGTTCAATGACAATGGAAATTCGAGAAGGTCGTGGAG
TTGGCAAAGACAAGGATCACATCTTCCTGCATCTGGATCACCTGGAACCA
TCAGTGCTGAAGGAACGCCTACCAGGCATTACGGAAACTGCAAAGGTGTT
TGCGGGCGTTGACGTGCACAAGGACCCTATCCCGGTGTTACCTACAGTGC
ACTACAACATGGGTGGTATTCCGACCAATTGGCGCGGTGAGGTTATTACC
CTAAAGGATGGCGACCCGAACTACGTGATCCCTGGACTGTTGGCAGCCGG
AGAGGCGGCGTGCGCAAGCGTGCACGGCGCAAACCGACTGGGAGCAAATT
CGCTACTGGATATTGTGGTGTTCGGACGCGCAACAGCCAAACGAGTAGCC
GAACTTGTAAAGCCCAACAGCGCGCATAGACCTTTGCCAGCCGACGCTGG
GGAACAGGCTATCGCTGACATGGACAGGGTGCGGTACGCGGATGGGGAAT
TGCGCACGTCGGAGATTCGGCTGAATATGCAAAAGATCATGCAGAACCAC
GCTGCAGTGTTCCGTTCCGATGAAAGTCTGAAAGAAGGCTGTGAGAAGAT
GGACGCATGTTATGAAAGTTTCTCGTCGGTGAAGACCAGCGACCGAGACA
TGATATTTAATACGGACATGATTGAGACGTTGGAGTTAAGGAATCTGTTG
CAAAATGCGTTGGTTACAATACACAGTGCCGAGGCGCGAAAGGAGAGCCG
TGGAGCGCACGCAAGGGAGGACTTCACGGAGAGGGACGATGAAAATTGGA
TGAAGCACACGCTGGGGTGGGTGTGCGAGCACACGGAGAAGAAGTACGGG
CGCGGATATGTGGGGATTGAGTACCGACCGGTTATCAACACCAGCCTGGA
CGACGCGGAGCAGACTGCGTTCCCTCCCGCCAAGCGCGTGTACTAG