Gcaud8320.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8320.t1
Unique Name	Gcaud8320.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1571_length_9696_cov_4.747007	contig	NODE_1571_length_9696_cov_4.747007:4744..6423 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	756272.Plabr_3820
PFAMs	An_peroxidase
Max annot lvl	203682\|Planctomycetes
Evalue	1.08e-87
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,2J53M@203682\|Planctomycetes
Description	Animal haem peroxidase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8320	Gcaud8320	Gracilaria caudata M_176_S67 male	gene	NODE_1571_length_9696_cov_4.747007 4744..6423 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8320.t1.stop1	Gcaud8320.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1571_length_9696_cov_4.747007 4744..4746 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8320.t1.CDS1	Gcaud8320.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1571_length_9696_cov_4.747007 4744..6423 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8320.t1.exon1	Gcaud8320.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1571_length_9696_cov_4.747007 4744..6423 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8320.t1.start1	Gcaud8320.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1571_length_9696_cov_4.747007 6421..6423 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8320.t1	Gcaud8320.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1571_length_9696_cov_4.747007 4744..6423 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423-
coding sequence from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423-

mRNA sequence

>Gcaud8320.t1 ID=Gcaud8320.t1|Name=Gcaud8320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=560bp
MAFYTLLVTTVLISIASAQQPFTNAQGKGAASLLPLPPRQGPKRVFPDPE
CLGLTFRTLTGRCTSRVDPTLGEARRAQFSYFDVNSATFDGDGLPSPREV
SNVVIEQEGDTSNSKGLNEMFTFFGAFADHDFAFTPITDQEQVDIMIPEG
DPILTTPSLTFFRSERALISDSSTIERPITLTSSALDLSMVYGNDEERNA
FLRVEGDCRLKTQGDNLLPLNTEGFVNAPNLSPEFFIAGDPRVNETPMIA
VMHTIWVREHNNVCDLLESDLSRLGVSDPDELYELARAVTIAEYQKIILD
EWLPALLGSEVTPYRGYRPDVDPTVSVEFTTAGFRFGHTLVGTDVTRIDA
QGKLLEPVAAKDMFFLSSSEFSSQKLDEFIRGASATLAQEFDEKVVDILR
NFLFENVPDQDGFDLISLNLQRSRDHNIVRFNDVREMFLGARATSFEEIS
TSAAENLREAYGDVDDVEAWVGFVAENKASGSGVGPTLGALLRTEFERLR
DGDQFFYLNVGMFPAIVRVVFPRINIELFSDSPLFNTILLRTTGVSAVNL
DATRNAFLI*

spliced messenger RNA

>Gcaud8320.t1 ID=Gcaud8320.t1|Name=Gcaud8320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCTATACACTGCTCGTGACCACCGTTTTAATCTCAATTGCATC
TGCGCAACAGCCCTTCACCAATGCGCAAGGCAAAGGGGCAGCTAGTCTTC
TCCCGCTCCCACCGCGTCAAGGTCCAAAACGTGTCTTCCCAGATCCGGAG
TGTCTTGGACTCACCTTCCGCACGCTGACAGGAAGGTGCACTTCCAGAGT
GGACCCGACTCTTGGAGAAGCTCGTCGTGCTCAGTTTAGTTACTTCGACG
TCAACTCGGCCACGTTTGATGGTGACGGATTGCCAAGCCCGCGTGAAGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACGTCTAACTCTAAAGGACT
CAACGAAATGTTTACATTCTTTGGAGCATTCGCAGATCACGATTTCGCTT
TTACACCGATAACTGATCAGGAACAGGTTGATATAATGATTCCTGAAGGC
GATCCGATACTTACCACACCATCTCTTACCTTCTTCCGCTCCGAACGTGC
ACTGATCAGTGATTCTTCCACCATCGAACGTCCGATCACTCTTACTTCTT
CTGCACTTGATTTGTCTATGGTGTACGGCAATGATGAAGAACGAAACGCT
TTCCTCCGTGTTGAGGGCGATTGTCGTCTCAAGACTCAAGGTGATAATCT
TCTACCGTTGAATACGGAGGGCTTTGTGAATGCACCTAACCTTTCGCCGG
AGTTCTTCATTGCGGGTGACCCAAGAGTGAATGAGACGCCCATGATCGCC
GTTATGCACACCATATGGGTGCGTGAACATAACAATGTCTGTGACTTGCT
GGAGTCAGACCTTTCAAGACTCGGGGTGAGCGATCCAGATGAGCTGTACG
AGTTGGCTCGTGCCGTGACGATTGCAGAATACCAGAAGATCATTTTAGAT
GAATGGCTTCCGGCGCTGTTGGGGTCCGAGGTCACGCCATACCGCGGATA
TCGACCGGATGTGGATCCCACTGTGAGCGTGGAATTCACAACAGCTGGTT
TTCGATTCGGACATACTCTGGTGGGAACTGATGTGACGCGCATAGATGCA
CAGGGAAAGTTATTAGAACCTGTTGCTGCTAAGGATATGTTCTTCTTGTC
GAGCTCAGAGTTCAGTTCTCAAAAGCTGGACGAATTTATTCGCGGCGCAT
CTGCAACGCTGGCACAGGAGTTTGATGAGAAGGTAGTGGATATTCTACGA
AACTTCCTGTTTGAGAACGTGCCCGATCAGGATGGATTTGATCTGATTTC
TCTTAACCTACAGCGTTCGAGAGATCACAACATTGTGAGATTCAACGACG
TTCGTGAAATGTTTTTGGGTGCGAGAGCAACGAGCTTTGAAGAAATTTCA
ACGAGCGCAGCGGAAAATCTGAGGGAGGCTTACGGAGATGTGGACGACGT
CGAGGCTTGGGTTGGATTCGTTGCCGAGAACAAGGCGAGTGGTTCAGGAG
TGGGACCCACTCTTGGTGCATTGTTGCGCACAGAGTTTGAACGCCTTCGT
GACGGGGATCAGTTTTTCTACTTGAACGTTGGCATGTTCCCGGCTATTGT
TCGAGTGGTGTTTCCACGAATCAATATCGAGTTGTTCTCGGATTCTCCGT
TGTTTAACACCATTTTGTTGCGCACCACAGGCGTGAGTGCTGTGAATTTG
GATGCTACACGAAATGCTTTCCTTATCTGA

protein sequence of Gcaud8320.t1

>Gcaud8320.t1 ID=Gcaud8320.t1|Name=Gcaud8320.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=560bp
MAFYTLLVTTVLISIASAQQPFTNAQGKGAASLLPLPPRQGPKRVFPDPE
CLGLTFRTLTGRCTSRVDPTLGEARRAQFSYFDVNSATFDGDGLPSPREV
SNVVIEQEGDTSNSKGLNEMFTFFGAFADHDFAFTPITDQEQVDIMIPEG
DPILTTPSLTFFRSERALISDSSTIERPITLTSSALDLSMVYGNDEERNA
FLRVEGDCRLKTQGDNLLPLNTEGFVNAPNLSPEFFIAGDPRVNETPMIA
VMHTIWVREHNNVCDLLESDLSRLGVSDPDELYELARAVTIAEYQKIILD
EWLPALLGSEVTPYRGYRPDVDPTVSVEFTTAGFRFGHTLVGTDVTRIDA
QGKLLEPVAAKDMFFLSSSEFSSQKLDEFIRGASATLAQEFDEKVVDILR
NFLFENVPDQDGFDLISLNLQRSRDHNIVRFNDVREMFLGARATSFEEIS
TSAAENLREAYGDVDDVEAWVGFVAENKASGSGVGPTLGALLRTEFERLR
DGDQFFYLNVGMFPAIVRVVFPRINIELFSDSPLFNTILLRTTGVSAVNL
DATRNAFLI*

mRNA from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8320.t1 ID=Gcaud8320.t1|Name=Gcaud8320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423- (Gracilaria caudata M_176_S67 male)
ATGGCCTTCTATACACTGCTCGTGACCACCGTTTTAATCTCAATTGCATC
TGCGCAACAGCCCTTCACCAATGCGCAAGGCAAAGGGGCAGCTAGTCTTC
TCCCGCTCCCACCGCGTCAAGGTCCAAAACGTGTCTTCCCAGATCCGGAG
TGTCTTGGACTCACCTTCCGCACGCTGACAGGAAGGTGCACTTCCAGAGT
GGACCCGACTCTTGGAGAAGCTCGTCGTGCTCAGTTTAGTTACTTCGACG
TCAACTCGGCCACGTTTGATGGTGACGGATTGCCAAGCCCGCGTGAAGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACGTCTAACTCTAAAGGACT
CAACGAAATGTTTACATTCTTTGGAGCATTCGCAGATCACGATTTCGCTT
TTACACCGATAACTGATCAGGAACAGGTTGATATAATGATTCCTGAAGGC
GATCCGATACTTACCACACCATCTCTTACCTTCTTCCGCTCCGAACGTGC
ACTGATCAGTGATTCTTCCACCATCGAACGTCCGATCACTCTTACTTCTT
CTGCACTTGATTTGTCTATGGTGTACGGCAATGATGAAGAACGAAACGCT
TTCCTCCGTGTTGAGGGCGATTGTCGTCTCAAGACTCAAGGTGATAATCT
TCTACCGTTGAATACGGAGGGCTTTGTGAATGCACCTAACCTTTCGCCGG
AGTTCTTCATTGCGGGTGACCCAAGAGTGAATGAGACGCCCATGATCGCC
GTTATGCACACCATATGGGTGCGTGAACATAACAATGTCTGTGACTTGCT
GGAGTCAGACCTTTCAAGACTCGGGGTGAGCGATCCAGATGAGCTGTACG
AGTTGGCTCGTGCCGTGACGATTGCAGAATACCAGAAGATCATTTTAGAT
GAATGGCTTCCGGCGCTGTTGGGGTCCGAGGTCACGCCATACCGCGGATA
TCGACCGGATGTGGATCCCACTGTGAGCGTGGAATTCACAACAGCTGGTT
TTCGATTCGGACATACTCTGGTGGGAACTGATGTGACGCGCATAGATGCA
CAGGGAAAGTTATTAGAACCTGTTGCTGCTAAGGATATGTTCTTCTTGTC
GAGCTCAGAGTTCAGTTCTCAAAAGCTGGACGAATTTATTCGCGGCGCAT
CTGCAACGCTGGCACAGGAGTTTGATGAGAAGGTAGTGGATATTCTACGA
AACTTCCTGTTTGAGAACGTGCCCGATCAGGATGGATTTGATCTGATTTC
TCTTAACCTACAGCGTTCGAGAGATCACAACATTGTGAGATTCAACGACG
TTCGTGAAATGTTTTTGGGTGCGAGAGCAACGAGCTTTGAAGAAATTTCA
ACGAGCGCAGCGGAAAATCTGAGGGAGGCTTACGGAGATGTGGACGACGT
CGAGGCTTGGGTTGGATTCGTTGCCGAGAACAAGGCGAGTGGTTCAGGAG
TGGGACCCACTCTTGGTGCATTGTTGCGCACAGAGTTTGAACGCCTTCGT
GACGGGGATCAGTTTTTCTACTTGAACGTTGGCATGTTCCCGGCTATTGT
TCGAGTGGTGTTTCCACGAATCAATATCGAGTTGTTCTCGGATTCTCCGT
TGTTTAACACCATTTTGTTGCGCACCACAGGCGTGAGTGCTGTGAATTTG
GATGCTACACGAAATGCTTTCCTTATCTGA

Coding sequence (CDS) from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423-

>Gcaud8320.t1 ID=Gcaud8320.t1|Name=Gcaud8320.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1680bp|location=Sequence derived from alignment at NODE_1571_length_9696_cov_4.747007:4744..6423- (Gracilaria caudata M_176_S67 male)
ATGGCCTTCTATACACTGCTCGTGACCACCGTTTTAATCTCAATTGCATC
TGCGCAACAGCCCTTCACCAATGCGCAAGGCAAAGGGGCAGCTAGTCTTC
TCCCGCTCCCACCGCGTCAAGGTCCAAAACGTGTCTTCCCAGATCCGGAG
TGTCTTGGACTCACCTTCCGCACGCTGACAGGAAGGTGCACTTCCAGAGT
GGACCCGACTCTTGGAGAAGCTCGTCGTGCTCAGTTTAGTTACTTCGACG
TCAACTCGGCCACGTTTGATGGTGACGGATTGCCAAGCCCGCGTGAAGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACGTCTAACTCTAAAGGACT
CAACGAAATGTTTACATTCTTTGGAGCATTCGCAGATCACGATTTCGCTT
TTACACCGATAACTGATCAGGAACAGGTTGATATAATGATTCCTGAAGGC
GATCCGATACTTACCACACCATCTCTTACCTTCTTCCGCTCCGAACGTGC
ACTGATCAGTGATTCTTCCACCATCGAACGTCCGATCACTCTTACTTCTT
CTGCACTTGATTTGTCTATGGTGTACGGCAATGATGAAGAACGAAACGCT
TTCCTCCGTGTTGAGGGCGATTGTCGTCTCAAGACTCAAGGTGATAATCT
TCTACCGTTGAATACGGAGGGCTTTGTGAATGCACCTAACCTTTCGCCGG
AGTTCTTCATTGCGGGTGACCCAAGAGTGAATGAGACGCCCATGATCGCC
GTTATGCACACCATATGGGTGCGTGAACATAACAATGTCTGTGACTTGCT
GGAGTCAGACCTTTCAAGACTCGGGGTGAGCGATCCAGATGAGCTGTACG
AGTTGGCTCGTGCCGTGACGATTGCAGAATACCAGAAGATCATTTTAGAT
GAATGGCTTCCGGCGCTGTTGGGGTCCGAGGTCACGCCATACCGCGGATA
TCGACCGGATGTGGATCCCACTGTGAGCGTGGAATTCACAACAGCTGGTT
TTCGATTCGGACATACTCTGGTGGGAACTGATGTGACGCGCATAGATGCA
CAGGGAAAGTTATTAGAACCTGTTGCTGCTAAGGATATGTTCTTCTTGTC
GAGCTCAGAGTTCAGTTCTCAAAAGCTGGACGAATTTATTCGCGGCGCAT
CTGCAACGCTGGCACAGGAGTTTGATGAGAAGGTAGTGGATATTCTACGA
AACTTCCTGTTTGAGAACGTGCCCGATCAGGATGGATTTGATCTGATTTC
TCTTAACCTACAGCGTTCGAGAGATCACAACATTGTGAGATTCAACGACG
TTCGTGAAATGTTTTTGGGTGCGAGAGCAACGAGCTTTGAAGAAATTTCA
ACGAGCGCAGCGGAAAATCTGAGGGAGGCTTACGGAGATGTGGACGACGT
CGAGGCTTGGGTTGGATTCGTTGCCGAGAACAAGGCGAGTGGTTCAGGAG
TGGGACCCACTCTTGGTGCATTGTTGCGCACAGAGTTTGAACGCCTTCGT
GACGGGGATCAGTTTTTCTACTTGAACGTTGGCATGTTCCCGGCTATTGT
TCGAGTGGTGTTTCCACGAATCAATATCGAGTTGTTCTCGGATTCTCCGT
TGTTTAACACCATTTTGTTGCGCACCACAGGCGTGAGTGCTGTGAATTTG
GATGCTACACGAAATGCTTTCCTTATCTGA