Gcaud1915.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1915.t1
Unique Name	Gcaud1915.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	240

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1565_length_9721_cov_4.172897	contig	NODE_1565_length_9721_cov_4.172897:9003..9721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708126.1
Preferred name	RPL4
PFAMs	Ribos_L4_asso_C,Ribosomal_L4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02930
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
GOs	GO:0000184,GO:0000956,GO:0001558,GO:0002181,GO:0003360,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022008,GO:0022603,GO:0022604,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030054,GO:0030154,GO:0030307,GO:0030312,GO:0030516,GO:0031090,GO:0031344,GO:0031346,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0040008,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055044,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090066,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0120035,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1990904,GO:2000026
Evalue	1.48e-108
EggNOG OGs	COG0088@1\|root,KOG1475@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1915	Gcaud1915	Gracilaria caudata M_176_S67 male	gene	NODE_1565_length_9721_cov_4.172897 9003..9721 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1915.t1.start1	Gcaud1915.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1565_length_9721_cov_4.172897 9003..9005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1915.t1.CDS1	Gcaud1915.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1565_length_9721_cov_4.172897 9003..9721 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1915.t1.exon1	Gcaud1915.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1565_length_9721_cov_4.172897 9003..9721 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1915.t1	Gcaud1915.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1565_length_9721_cov_4.172897 9003..9721 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+
coding sequence from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+

mRNA sequence

>Gcaud1915.t1 ID=Gcaud1915.t1|Name=Gcaud1915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MATAAAVRPVVTVLSADSAQPSGTVPMPAVFSAPIRNDIVQFVHTNMRKN
RRQPYAVNNMSGMQSSAASWGTGRAVSRIPRVPGGGTHRSGQGAFGNMCR
GGRMFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDV
PEVPLVIDDSVQAFNKTAKAVTLLKSLGAYDDVERVMETKNLRAGKGKMR
NRRYKQRRGPLVVYHNDDGIVRAFRNLPGVDLCCVTRLNL

spliced messenger RNA

>Gcaud1915.t1 ID=Gcaud1915.t1|Name=Gcaud1915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=719bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGCCGCCGCCGTCCGTCCGGTCGTCACCGTGCTCAGCGCCGA
CTCCGCGCAGCCCTCCGGCACCGTTCCCATGCCCGCCGTGTTCTCCGCGC
CGATCCGCAACGACATTGTGCAATTCGTGCACACCAACATGCGCAAAAAC
CGTCGTCAACCGTACGCCGTCAACAACATGTCCGGCATGCAATCCTCCGC
CGCCTCCTGGGGAACCGGACGTGCCGTCTCTCGAATCCCGCGTGTGCCCG
GTGGTGGTACACATCGTTCCGGACAGGGTGCGTTTGGAAACATGTGTCGC
GGAGGACGAATGTTTGCGCCCACAAAGATCTGGAGAAAATGGCACCGCAA
GGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGTTGGCCGCTT
CTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATTGATGATGTG
CCGGAGGTGCCGCTTGTGATTGATGATTCTGTGCAGGCTTTTAACAAGAC
CGCCAAGGCTGTCACCTTGCTCAAGTCGCTGGGCGCTTATGATGACGTGG
AGCGTGTGATGGAGACCAAGAATTTGCGCGCTGGAAAGGGAAAGATGCGT
AATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTACCACAATGA
TGATGGTATTGTCAGGGCCTTCCGCAATCTTCCGGGTGTGGATCTGTGTT
GTGTCACCCGTCTCAACCT

protein sequence of Gcaud1915.t1

>Gcaud1915.t1 ID=Gcaud1915.t1|Name=Gcaud1915.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MATAAAVRPVVTVLSADSAQPSGTVPMPAVFSAPIRNDIVQFVHTNMRKN
RRQPYAVNNMSGMQSSAASWGTGRAVSRIPRVPGGGTHRSGQGAFGNMCR
GGRMFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDV
PEVPLVIDDSVQAFNKTAKAVTLLKSLGAYDDVERVMETKNLRAGKGKMR
NRRYKQRRGPLVVYHNDDGIVRAFRNLPGVDLCCVTRLNL

mRNA from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1915.t1 ID=Gcaud1915.t1|Name=Gcaud1915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=719bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+ (Gracilaria caudata M_176_S67 male)
ATGGCCACCGCCGCCGCCGTCCGTCCGGTCGTCACCGTGCTCAGCGCCGA
CTCCGCGCAGCCCTCCGGCACCGTTCCCATGCCCGCCGTGTTCTCCGCGC
CGATCCGCAACGACATTGTGCAATTCGTGCACACCAACATGCGCAAAAAC
CGTCGTCAACCGTACGCCGTCAACAACATGTCCGGCATGCAATCCTCCGC
CGCCTCCTGGGGAACCGGACGTGCCGTCTCTCGAATCCCGCGTGTGCCCG
GTGGTGGTACACATCGTTCCGGACAGGGTGCGTTTGGAAACATGTGTCGC
GGAGGACGAATGTTTGCGCCCACAAAGATCTGGAGAAAATGGCACCGCAA
GGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGTTGGCCGCTT
CTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATTGATGATGTG
CCGGAGGTGCCGCTTGTGATTGATGATTCTGTGCAGGCTTTTAACAAGAC
CGCCAAGGCTGTCACCTTGCTCAAGTCGCTGGGCGCTTATGATGACGTGG
AGCGTGTGATGGAGACCAAGAATTTGCGCGCTGGAAAGGGAAAGATGCGT
AATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTACCACAATGA
TGATGGTATTGTCAGGGCCTTCCGCAATCTTCCGGGTGTGGATCTGTGTT
GTGTCACCCGTCTCAACCT

Coding sequence (CDS) from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+

>Gcaud1915.t1 ID=Gcaud1915.t1|Name=Gcaud1915.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=719bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:9003..9721+ (Gracilaria caudata M_176_S67 male)
ATGGCCACCGCCGCCGCCGTCCGTCCGGTCGTCACCGTGCTCAGCGCCGA
CTCCGCGCAGCCCTCCGGCACCGTTCCCATGCCCGCCGTGTTCTCCGCGC
CGATCCGCAACGACATTGTGCAATTCGTGCACACCAACATGCGCAAAAAC
CGTCGTCAACCGTACGCCGTCAACAACATGTCCGGCATGCAATCCTCCGC
CGCCTCCTGGGGAACCGGACGTGCCGTCTCTCGAATCCCGCGTGTGCCCG
GTGGTGGTACACATCGTTCCGGACAGGGTGCGTTTGGAAACATGTGTCGC
GGAGGACGAATGTTTGCGCCCACAAAGATCTGGAGAAAATGGCACCGCAA
GGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGTTGGCCGCTT
CTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATTGATGATGTG
CCGGAGGTGCCGCTTGTGATTGATGATTCTGTGCAGGCTTTTAACAAGAC
CGCCAAGGCTGTCACCTTGCTCAAGTCGCTGGGCGCTTATGATGACGTGG
AGCGTGTGATGGAGACCAAGAATTTGCGCGCTGGAAAGGGAAAGATGCGT
AATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTACCACAATGA
TGATGGTATTGTCAGGGCCTTCCGCAATCTTCCGGGTGTGGATCTGTGTT
GTGTCACCCGTCTCAACCT