Gcaud8268.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8268.t1
Unique NameGcaud8268.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length679
Homology
BLAST of Gcaud8268.t1 vs. uniprot
Match: R7QHG7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHG7_CHOCR)

HSP 1 Score: 395 bits (1015), Expect = 1.740e-124
Identity = 263/715 (36.78%), Postives = 361/715 (50.49%), Query Frame = 0
Query:   17 TIWNKEQGMAMVGRHVRITWPSDNTVYTALVVDFYDDSNQHKVLYDSDESIEVLELGDGPQQRSWSGVRDIERDPLVGKRIILFDHGEAPGDEWFDFMRDASQ-AEDKFQVIILQRIK-NVMKEDVVGPM----SSGKHAFYRVLNVINDYLALIDLAATDYEMVTSPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDPTK--------DIDQHEHSDGEVA---PLSSS----RRRKAAKDVSTAPVLPP--------------VDDDDDLDIDMYKVAKVVSADRIVEADEPFGS---GPAVDVDVDQDDFGVSPIR---GRAAELG--GSHEAHDERV--RGSGSKVKRRAAPKP-SPFPELDEDENG--QDTASDNEDDGLKSKSR-----RVQCQVGDFIILDTGIGGAPRKAYVEAHLPETDTHFVAFCDRMGGNLQIKLTRDNHRVVNESEGKQLAKTKQDTFDDDVAMASDETPEAKPRRVQKRKAKAPGRQRKRGSRRIGSPEVKGQSANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVYMIDHCIETLNLKYREWTLLPSEKEPWMDNGLVGKRLYVFWPGEYDDAESQELAKQAFGDDTKVPYEAYVLSYIGEGKYKIIYPATEDTEIRVLRATDDE--DASALEKEWDLLDKGVKEIEGLPIIGW 676
            T W++  G+A+VG+ + + WPSD   Y ALVV F+  + +HK++Y  DES+E ++LG GP QR +  + D  +DPLVGK I      + P   WFDFMRD  + +  KF VI+   I       +V  P      S    FYRV+ + N+YLA +DLA  DY + T P+                                                          Y+PTK        D D+ +  +  V    P S S    R  KAA++   A V+ P                   DL +D  +   +   +  V+ D  F     G +V+V  D     V P+    GRA   G  G+ +  D+ +  R +G K  + + P P S +P L EDE G   DTASD+E  G  S+ +       + QVGD+I LD G G  PRKA+VEA+LP  D HFVAFCD  GGNL++KLTR NH V+ + E   L++T          +A ++   A  R  ++R        R +      SP ++G SA  +ICGRC+ IVWP   LVY ALVLG++    +H +VY+ DHC+E + LKYREW LL  E EPW+  G++G RLYV W GEYD AE+ E +K+ F  + KV YEAYVLSY GEGKY ++YP TEDTE+R L+  + E  D   LE+EW  L  G  E+ GLP++GW
Sbjct:   30 TFWSEPDGLALVGKAISVLWPSDGNYYPALVVGFHPRARKHKLIYLEDESVESVDLGIGPAQRDFR-LADSPKDPLVGKTIEFLPDAKPPAASWFDFMRDPREKSAHKFSVIVFASIDYEPQPNEVCSPPRPKGDSTPSQFYRVIYLANEYLATVDLAHVDYNIETPPQQPEDPVMEEMESRSGPGSKSALPQQLRRSGTRSIQDDEQDGAGGDD------------YEPTKAEQDDVSDDADEQDEKEPVVKKDLPPSLSETIGRVTKAAEEAGAADVVVPPAVVGQKRADRKYRASGTKDLVVDAMRDVVMDKKNVSVDIDTGFDKPEPGTSVEVSPDGSPNAV-PLEKTGGRAKGEGSIGTQDTRDDPLEPRSAGKKSGKSSRPVPASLYPPLFEDEEGGDNDTASDDEKLGWASEEKVEGAGESKSQVGDYISLDLGDGNEPRKAFVEAYLPGLDKHFVAFCDNKGGNLKVKLTRSNHTVLADDEVHVLSRTP---------IAKEDPGAAAGRSKRRRNVLTLSDSRPKKKLEARSPPIRGDSAGPEICGRCLKIVWPESELVYTALVLGFNPEKNEHLVVYLSDHCVEVVQLKYREWNLLSREDEPWIAQGMLGNRLYVLWNGEYDSAEANEKSKEIFDGECKVVYEAYVLSYEGEGKYLLLYPNTEDTEVRTLQMDEKERGDQKPLEREWGPLGAGATEVAGLPVVGW 721          
BLAST of Gcaud8268.t1 vs. uniprot
Match: A0A2V3INV6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INV6_9FLOR)

HSP 1 Score: 375 bits (963), Expect = 5.960e-119
Identity = 194/288 (67.36%), Postives = 224/288 (77.78%), Query Frame = 0
Query:  363 FPELDEDENGQDTASDNEDDG-LKSKSRRVQCQVGDFIILDTGIGGAPRKAYVEAHLPETDTHFVAFCDRMGGNLQIKLTRDNHRVVNESEGKQLAKTKQ-----DTFDDDVAMA---SDETPEAKPRRVQKRKAK-APGRQRKRGSRRIGSPEVKGQSANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVYMIDHCIETLNLKYREWTLLPSEKEPWMDNGLVGKRLYVFWPGEYDDAESQELAKQAFGDDTKVPYEAYVLSYIGEGKYKIIYPATEDTEI 640
             P L +DE  +  ASD ++   +KSKSR V C VGDFI LDTGIGGAPR AY+EA+LPE  THFV+FCDR GGNLQIK+T DNH V +E+EGK+LAK KQ     + +D D A A   SDE P  K RR  KR+ K    R  KR +R   +PE+KG+SANQDICGRCISIVWPGENLVYVAL+LGYSS+S QHQ+VYM+DHCIETL+LKYREWT LP EKE WMDN LVGKRLYVFWPGEYDD  SQ LA++AFGD+TKVPYEAYVLSY+ E ++K IYPATED EI
Sbjct:  235 LPYLFDDEEDEHEASDGDNHWKIKSKSRSVSCDVGDFISLDTGIGGAPRTAYIEAYLPEAGTHFVSFCDRRGGNLQIKVTPDNHHVPSEAEGKKLAKQKQREVHDEDYDKDNAAAEILSDEAPPPKTRRTPKRQGKLTSSRPAKRSNRYKRTPEIKGKSANQDICGRCISIVWPGENLVYVALILGYSSYSKQHQVVYMLDHCIETLSLKYREWTPLPREKELWMDNSLVGKRLYVFWPGEYDDEGSQVLAQKAFGDETKVPYEAYVLSYLVEQEHKTIYPATEDMEI 522          
The following BLAST results are available for this feature:
BLAST of Gcaud8268.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QHG7_CHOCR1.740e-12436.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3INV6_9FLOR5.960e-11967.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..498
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 449..508
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 449..481
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..284
NoneNo IPR availablePANTHERPTHR12663:SF3TRANSCRIPTIONAL REGULATORcoord: 12..89
coord: 182..571
IPR039776Sister chromatid cohesion protein Pds5PANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 12..89
coord: 182..571

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1563_length_9733_cov_3.722049contigNODE_1563_length_9733_cov_3.722049:4922..6958 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8268.t1Gcaud8268.t1Gracilaria caudata M_176_S67 malemRNANODE_1563_length_9733_cov_3.722049 4922..6958 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=679bp
MVVARKVTSRRDKNKRTIWNKEQGMAMVGRHVRITWPSDNTVYTALVVDF
YDDSNQHKVLYDSDESIEVLELGDGPQQRSWSGVRDIERDPLVGKRIILF
DHGEAPGDEWFDFMRDASQAEDKFQVIILQRIKNVMKEDVVGPMSSGKHA
FYRVLNVINDYLALIDLAATDYEMVTSPEAEAEEEVEAEFVADPEPAPEP
EPEAEAEADPMVSSPSPGPKAADAEDEPQDADKDEEEYDPTKDIDQHEHS
DGEVAPLSSSRRRKAAKDVSTAPVLPPVDDDDDLDIDMYKVAKVVSADRI
VEADEPFGSGPAVDVDVDQDDFGVSPIRGRAAELGGSHEAHDERVRGSGS
KVKRRAAPKPSPFPELDEDENGQDTASDNEDDGLKSKSRRVQCQVGDFII
LDTGIGGAPRKAYVEAHLPETDTHFVAFCDRMGGNLQIKLTRDNHRVVNE
SEGKQLAKTKQDTFDDDVAMASDETPEAKPRRVQKRKAKAPGRQRKRGSR
RIGSPEVKGQSANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVY
MIDHCIETLNLKYREWTLLPSEKEPWMDNGLVGKRLYVFWPGEYDDAESQ
ELAKQAFGDDTKVPYEAYVLSYIGEGKYKIIYPATEDTEIRVLRATDDED
ASALEKEWDLLDKGVKEIEGLPIIGWTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039776Pds5