Gcaud8268.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8268.t1
Unique Name	Gcaud8268.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1563_length_9733_cov_3.722049	contig	NODE_1563_length_9733_cov_3.722049:4922..6958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8268	Gcaud8268	Gracilaria caudata M_176_S67 male	gene	NODE_1563_length_9733_cov_3.722049 4922..6958 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8268.t1.stop1	Gcaud8268.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1563_length_9733_cov_3.722049 4922..4924 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8268.t1.CDS1	Gcaud8268.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1563_length_9733_cov_3.722049 4922..6958 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8268.t1.exon1	Gcaud8268.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1563_length_9733_cov_3.722049 4922..6958 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8268.t1.start1	Gcaud8268.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1563_length_9733_cov_3.722049 6956..6958 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8268.t1	Gcaud8268.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1563_length_9733_cov_3.722049 4922..6958 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958-
coding sequence from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958-

mRNA sequence

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=679bp
MVVARKVTSRRDKNKRTIWNKEQGMAMVGRHVRITWPSDNTVYTALVVDF
YDDSNQHKVLYDSDESIEVLELGDGPQQRSWSGVRDIERDPLVGKRIILF
DHGEAPGDEWFDFMRDASQAEDKFQVIILQRIKNVMKEDVVGPMSSGKHA
FYRVLNVINDYLALIDLAATDYEMVTSPEAEAEEEVEAEFVADPEPAPEP
EPEAEAEADPMVSSPSPGPKAADAEDEPQDADKDEEEYDPTKDIDQHEHS
DGEVAPLSSSRRRKAAKDVSTAPVLPPVDDDDDLDIDMYKVAKVVSADRI
VEADEPFGSGPAVDVDVDQDDFGVSPIRGRAAELGGSHEAHDERVRGSGS
KVKRRAAPKPSPFPELDEDENGQDTASDNEDDGLKSKSRRVQCQVGDFII
LDTGIGGAPRKAYVEAHLPETDTHFVAFCDRMGGNLQIKLTRDNHRVVNE
SEGKQLAKTKQDTFDDDVAMASDETPEAKPRRVQKRKAKAPGRQRKRGSR
RIGSPEVKGQSANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVY
MIDHCIETLNLKYREWTLLPSEKEPWMDNGLVGKRLYVFWPGEYDDAESQ
ELAKQAFGDDTKVPYEAYVLSYIGEGKYKIIYPATEDTEIRVLRATDDED
ASALEKEWDLLDKGVKEIEGLPIIGWTD*

spliced messenger RNA

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTTGCGCGCAAGGTGACGTCGCGCCGCGACAAGAACAAACGAAC
AATATGGAATAAGGAACAGGGAATGGCCATGGTTGGCCGTCATGTGCGAA
TCACCTGGCCTTCCGATAACACCGTGTACACAGCGCTTGTCGTTGACTTT
TACGACGATTCAAATCAGCACAAGGTGTTGTATGATTCGGACGAGTCGAT
CGAAGTGTTAGAGCTTGGCGATGGACCGCAACAGCGTTCGTGGTCCGGCG
TGCGTGATATAGAACGAGATCCTCTCGTGGGGAAGAGAATCATTTTATTC
GATCACGGCGAGGCACCCGGTGATGAATGGTTCGACTTTATGCGAGATGC
ATCTCAGGCGGAAGATAAGTTTCAAGTCATTATTCTGCAGAGAATCAAAA
ATGTGATGAAGGAAGATGTGGTTGGCCCCATGTCCAGCGGGAAGCATGCC
TTTTATCGCGTACTCAATGTTATAAACGACTATCTTGCGTTAATTGATCT
GGCTGCCACCGACTACGAGATGGTGACTTCCCCCGAGGCCGAGGCTGAGG
AGGAGGTGGAGGCCGAGTTTGTGGCGGATCCAGAACCTGCACCTGAACCA
GAGCCAGAAGCCGAAGCCGAAGCCGACCCCATGGTTTCTTCGCCATCGCC
GGGCCCGAAGGCTGCCGATGCCGAAGATGAGCCGCAAGACGCTGACAAAG
ATGAAGAGGAGTATGACCCCACAAAAGACATTGACCAACACGAACATAGT
GATGGCGAGGTGGCACCATTGTCTTCTAGTCGCCGTCGCAAGGCTGCTAA
AGATGTTAGTACTGCACCGGTGCTTCCGCCTGTTGATGACGATGACGATT
TGGACATTGACATGTACAAGGTGGCTAAAGTGGTGTCCGCAGATCGCATT
GTGGAGGCGGACGAACCGTTCGGTTCAGGACCTGCGGTTGATGTTGACGT
GGATCAGGACGACTTTGGGGTGTCGCCCATCAGGGGTCGCGCCGCCGAAC
TTGGGGGCTCGCACGAAGCGCATGACGAGCGTGTGCGAGGTTCTGGCTCC
AAGGTGAAACGAAGGGCAGCGCCGAAACCGTCTCCGTTCCCCGAGTTGGA
TGAGGACGAAAATGGACAGGATACAGCGTCGGACAATGAAGACGATGGGT
TGAAGTCAAAGAGCAGGAGAGTTCAATGTCAGGTTGGCGATTTCATCATC
CTGGACACCGGTATCGGGGGCGCTCCGCGCAAGGCGTATGTGGAGGCGCA
CTTGCCCGAAACTGACACGCATTTCGTCGCGTTCTGTGACAGAATGGGCG
GCAACTTGCAAATCAAGCTGACGCGCGATAACCATAGAGTTGTGAACGAG
AGTGAGGGAAAGCAACTGGCAAAGACGAAACAGGATACGTTTGACGACGA
CGTGGCGATGGCGTCCGACGAGACGCCGGAGGCAAAGCCGCGACGTGTGC
AAAAGCGAAAGGCAAAGGCGCCGGGGAGACAAAGGAAACGCGGGAGTCGA
AGAATTGGATCGCCGGAGGTGAAGGGACAATCGGCAAATCAAGACATTTG
CGGAAGATGCATTTCGATTGTGTGGCCGGGCGAGAACCTTGTTTATGTGG
CGTTGGTACTGGGTTATAGCTCGTTTTCGTTGCAACATCAAATTGTTTAC
ATGATTGACCATTGTATCGAAACGCTGAATTTGAAGTACAGAGAGTGGAC
GCTGCTGCCGTCTGAAAAGGAGCCGTGGATGGACAACGGGCTGGTTGGAA
AGAGACTGTATGTGTTCTGGCCGGGCGAGTATGATGATGCCGAAAGCCAG
GAATTGGCAAAACAGGCGTTTGGAGATGATACCAAGGTGCCGTATGAGGC
GTATGTGCTGAGCTACATTGGGGAGGGCAAGTACAAGATCATCTACCCGG
CTACGGAGGATACGGAGATCCGAGTGCTGAGGGCGACGGATGATGAGGAC
GCGTCGGCGCTGGAGAAGGAATGGGACTTGTTGGATAAGGGTGTAAAGGA
AATTGAAGGGCTGCCTATCATTGGATGGACGGATTGA

protein sequence of Gcaud8268.t1

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=679bp
MVVARKVTSRRDKNKRTIWNKEQGMAMVGRHVRITWPSDNTVYTALVVDF
YDDSNQHKVLYDSDESIEVLELGDGPQQRSWSGVRDIERDPLVGKRIILF
DHGEAPGDEWFDFMRDASQAEDKFQVIILQRIKNVMKEDVVGPMSSGKHA
FYRVLNVINDYLALIDLAATDYEMVTSPEAEAEEEVEAEFVADPEPAPEP
EPEAEAEADPMVSSPSPGPKAADAEDEPQDADKDEEEYDPTKDIDQHEHS
DGEVAPLSSSRRRKAAKDVSTAPVLPPVDDDDDLDIDMYKVAKVVSADRI
VEADEPFGSGPAVDVDVDQDDFGVSPIRGRAAELGGSHEAHDERVRGSGS
KVKRRAAPKPSPFPELDEDENGQDTASDNEDDGLKSKSRRVQCQVGDFII
LDTGIGGAPRKAYVEAHLPETDTHFVAFCDRMGGNLQIKLTRDNHRVVNE
SEGKQLAKTKQDTFDDDVAMASDETPEAKPRRVQKRKAKAPGRQRKRGSR
RIGSPEVKGQSANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVY
MIDHCIETLNLKYREWTLLPSEKEPWMDNGLVGKRLYVFWPGEYDDAESQ
ELAKQAFGDDTKVPYEAYVLSYIGEGKYKIIYPATEDTEIRVLRATDDED
ASALEKEWDLLDKGVKEIEGLPIIGWTD*

mRNA from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958- (Gracilaria caudata M_176_S67 male)
ATGGTCGTTGCGCGCAAGGTGACGTCGCGCCGCGACAAGAACAAACGAAC
AATATGGAATAAGGAACAGGGAATGGCCATGGTTGGCCGTCATGTGCGAA
TCACCTGGCCTTCCGATAACACCGTGTACACAGCGCTTGTCGTTGACTTT
TACGACGATTCAAATCAGCACAAGGTGTTGTATGATTCGGACGAGTCGAT
CGAAGTGTTAGAGCTTGGCGATGGACCGCAACAGCGTTCGTGGTCCGGCG
TGCGTGATATAGAACGAGATCCTCTCGTGGGGAAGAGAATCATTTTATTC
GATCACGGCGAGGCACCCGGTGATGAATGGTTCGACTTTATGCGAGATGC
ATCTCAGGCGGAAGATAAGTTTCAAGTCATTATTCTGCAGAGAATCAAAA
ATGTGATGAAGGAAGATGTGGTTGGCCCCATGTCCAGCGGGAAGCATGCC
TTTTATCGCGTACTCAATGTTATAAACGACTATCTTGCGTTAATTGATCT
GGCTGCCACCGACTACGAGATGGTGACTTCCCCCGAGGCCGAGGCTGAGG
AGGAGGTGGAGGCCGAGTTTGTGGCGGATCCAGAACCTGCACCTGAACCA
GAGCCAGAAGCCGAAGCCGAAGCCGACCCCATGGTTTCTTCGCCATCGCC
GGGCCCGAAGGCTGCCGATGCCGAAGATGAGCCGCAAGACGCTGACAAAG
ATGAAGAGGAGTATGACCCCACAAAAGACATTGACCAACACGAACATAGT
GATGGCGAGGTGGCACCATTGTCTTCTAGTCGCCGTCGCAAGGCTGCTAA
AGATGTTAGTACTGCACCGGTGCTTCCGCCTGTTGATGACGATGACGATT
TGGACATTGACATGTACAAGGTGGCTAAAGTGGTGTCCGCAGATCGCATT
GTGGAGGCGGACGAACCGTTCGGTTCAGGACCTGCGGTTGATGTTGACGT
GGATCAGGACGACTTTGGGGTGTCGCCCATCAGGGGTCGCGCCGCCGAAC
TTGGGGGCTCGCACGAAGCGCATGACGAGCGTGTGCGAGGTTCTGGCTCC
AAGGTGAAACGAAGGGCAGCGCCGAAACCGTCTCCGTTCCCCGAGTTGGA
TGAGGACGAAAATGGACAGGATACAGCGTCGGACAATGAAGACGATGGGT
TGAAGTCAAAGAGCAGGAGAGTTCAATGTCAGGTTGGCGATTTCATCATC
CTGGACACCGGTATCGGGGGCGCTCCGCGCAAGGCGTATGTGGAGGCGCA
CTTGCCCGAAACTGACACGCATTTCGTCGCGTTCTGTGACAGAATGGGCG
GCAACTTGCAAATCAAGCTGACGCGCGATAACCATAGAGTTGTGAACGAG
AGTGAGGGAAAGCAACTGGCAAAGACGAAACAGGATACGTTTGACGACGA
CGTGGCGATGGCGTCCGACGAGACGCCGGAGGCAAAGCCGCGACGTGTGC
AAAAGCGAAAGGCAAAGGCGCCGGGGAGACAAAGGAAACGCGGGAGTCGA
AGAATTGGATCGCCGGAGGTGAAGGGACAATCGGCAAATCAAGACATTTG
CGGAAGATGCATTTCGATTGTGTGGCCGGGCGAGAACCTTGTTTATGTGG
CGTTGGTACTGGGTTATAGCTCGTTTTCGTTGCAACATCAAATTGTTTAC
ATGATTGACCATTGTATCGAAACGCTGAATTTGAAGTACAGAGAGTGGAC
GCTGCTGCCGTCTGAAAAGGAGCCGTGGATGGACAACGGGCTGGTTGGAA
AGAGACTGTATGTGTTCTGGCCGGGCGAGTATGATGATGCCGAAAGCCAG
GAATTGGCAAAACAGGCGTTTGGAGATGATACCAAGGTGCCGTATGAGGC
GTATGTGCTGAGCTACATTGGGGAGGGCAAGTACAAGATCATCTACCCGG
CTACGGAGGATACGGAGATCCGAGTGCTGAGGGCGACGGATGATGAGGAC
GCGTCGGCGCTGGAGAAGGAATGGGACTTGTTGGATAAGGGTGTAAAGGA
AATTGAAGGGCTGCCTATCATTGGATGGACGGATTGA

Coding sequence (CDS) from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958-

>Gcaud8268.t1 ID=Gcaud8268.t1|Name=Gcaud8268.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2037bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:4922..6958- (Gracilaria caudata M_176_S67 male)
ATGGTCGTTGCGCGCAAGGTGACGTCGCGCCGCGACAAGAACAAACGAAC
AATATGGAATAAGGAACAGGGAATGGCCATGGTTGGCCGTCATGTGCGAA
TCACCTGGCCTTCCGATAACACCGTGTACACAGCGCTTGTCGTTGACTTT
TACGACGATTCAAATCAGCACAAGGTGTTGTATGATTCGGACGAGTCGAT
CGAAGTGTTAGAGCTTGGCGATGGACCGCAACAGCGTTCGTGGTCCGGCG
TGCGTGATATAGAACGAGATCCTCTCGTGGGGAAGAGAATCATTTTATTC
GATCACGGCGAGGCACCCGGTGATGAATGGTTCGACTTTATGCGAGATGC
ATCTCAGGCGGAAGATAAGTTTCAAGTCATTATTCTGCAGAGAATCAAAA
ATGTGATGAAGGAAGATGTGGTTGGCCCCATGTCCAGCGGGAAGCATGCC
TTTTATCGCGTACTCAATGTTATAAACGACTATCTTGCGTTAATTGATCT
GGCTGCCACCGACTACGAGATGGTGACTTCCCCCGAGGCCGAGGCTGAGG
AGGAGGTGGAGGCCGAGTTTGTGGCGGATCCAGAACCTGCACCTGAACCA
GAGCCAGAAGCCGAAGCCGAAGCCGACCCCATGGTTTCTTCGCCATCGCC
GGGCCCGAAGGCTGCCGATGCCGAAGATGAGCCGCAAGACGCTGACAAAG
ATGAAGAGGAGTATGACCCCACAAAAGACATTGACCAACACGAACATAGT
GATGGCGAGGTGGCACCATTGTCTTCTAGTCGCCGTCGCAAGGCTGCTAA
AGATGTTAGTACTGCACCGGTGCTTCCGCCTGTTGATGACGATGACGATT
TGGACATTGACATGTACAAGGTGGCTAAAGTGGTGTCCGCAGATCGCATT
GTGGAGGCGGACGAACCGTTCGGTTCAGGACCTGCGGTTGATGTTGACGT
GGATCAGGACGACTTTGGGGTGTCGCCCATCAGGGGTCGCGCCGCCGAAC
TTGGGGGCTCGCACGAAGCGCATGACGAGCGTGTGCGAGGTTCTGGCTCC
AAGGTGAAACGAAGGGCAGCGCCGAAACCGTCTCCGTTCCCCGAGTTGGA
TGAGGACGAAAATGGACAGGATACAGCGTCGGACAATGAAGACGATGGGT
TGAAGTCAAAGAGCAGGAGAGTTCAATGTCAGGTTGGCGATTTCATCATC
CTGGACACCGGTATCGGGGGCGCTCCGCGCAAGGCGTATGTGGAGGCGCA
CTTGCCCGAAACTGACACGCATTTCGTCGCGTTCTGTGACAGAATGGGCG
GCAACTTGCAAATCAAGCTGACGCGCGATAACCATAGAGTTGTGAACGAG
AGTGAGGGAAAGCAACTGGCAAAGACGAAACAGGATACGTTTGACGACGA
CGTGGCGATGGCGTCCGACGAGACGCCGGAGGCAAAGCCGCGACGTGTGC
AAAAGCGAAAGGCAAAGGCGCCGGGGAGACAAAGGAAACGCGGGAGTCGA
AGAATTGGATCGCCGGAGGTGAAGGGACAATCGGCAAATCAAGACATTTG
CGGAAGATGCATTTCGATTGTGTGGCCGGGCGAGAACCTTGTTTATGTGG
CGTTGGTACTGGGTTATAGCTCGTTTTCGTTGCAACATCAAATTGTTTAC
ATGATTGACCATTGTATCGAAACGCTGAATTTGAAGTACAGAGAGTGGAC
GCTGCTGCCGTCTGAAAAGGAGCCGTGGATGGACAACGGGCTGGTTGGAA
AGAGACTGTATGTGTTCTGGCCGGGCGAGTATGATGATGCCGAAAGCCAG
GAATTGGCAAAACAGGCGTTTGGAGATGATACCAAGGTGCCGTATGAGGC
GTATGTGCTGAGCTACATTGGGGAGGGCAAGTACAAGATCATCTACCCGG
CTACGGAGGATACGGAGATCCGAGTGCTGAGGGCGACGGATGATGAGGAC
GCGTCGGCGCTGGAGAAGGAATGGGACTTGTTGGATAAGGGTGTAAAGGA
AATTGAAGGGCTGCCTATCATTGGATGGACGGATTGA