Gcaud9342.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9342.t1
Unique NameGcaud9342.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1524_length_9953_cov_3.701683contigNODE_1524_length_9953_cov_3.701683:1115..1460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9342Gcaud9342Gracilaria caudata M_176_S67 malegeneNODE_1524_length_9953_cov_3.701683 1115..1460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1Gcaud9342.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1524_length_9953_cov_3.701683 1115..1460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1.stop1Gcaud9342.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1524_length_9953_cov_3.701683 1115..1117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1.CDS1Gcaud9342.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1524_length_9953_cov_3.701683 1115..1224 -
Gcaud9342.t1.CDS2Gcaud9342.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1524_length_9953_cov_3.701683 1307..1460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1.exon1Gcaud9342.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1524_length_9953_cov_3.701683 1115..1224 -
Gcaud9342.t1.exon2Gcaud9342.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1524_length_9953_cov_3.701683 1307..1460 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1.intron1Gcaud9342.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1524_length_9953_cov_3.701683 1225..1306 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9342.t1.start1Gcaud9342.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1524_length_9953_cov_3.701683 1458..1460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9342.t1 ID=Gcaud9342.t1|Name=Gcaud9342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=88bp
MLGKSQMMGERNFCLFCAWRSHHPERAWLAAGFWLVLIADAVSFVVGVST
LLLSHFRGNARAMSAIVFPLRSPKEGNSNPRILLSYV*
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spliced messenger RNA

>Gcaud9342.t1 ID=Gcaud9342.t1|Name=Gcaud9342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1115..1460- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGGTAAAAGCCAGATGATGGGCGAGAGAAACTTCTGTCTATTTTG
TGCTTGGCGCTCTCATCATCCGGAGAGGGCGTGGCTAGCGGCTGGGTTTT
GGCTCGTGTTGATCGCCGATGCTGTAAGCTTCGTTGTTGGGGTGTCTACC
CTTCTGCTCTCGCATTTTCGTGGCAATGCCCGGGCGATGTCTGCAATTGT
CTTTCCTCTTCGTTCTCCCAAGGAGGGCAACTCCAATCCACGAATTCTCC
TCTCCTACGTGTAG
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protein sequence of Gcaud9342.t1

>Gcaud9342.t1 ID=Gcaud9342.t1|Name=Gcaud9342.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=88bp
MLGKSQMMGERNFCLFCAWRSHHPERAWLAAGFWLVLIADAVSFVVGVST
LLLSHFRGNARAMSAIVFPLRSPKEGNSNPRILLSYV*
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mRNA from alignment at NODE_1524_length_9953_cov_3.701683:1115..1460-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9342.t1 ID=Gcaud9342.t1|Name=Gcaud9342.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=346bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1115..1460- (Gracilaria caudata M_176_S67 male)
ATGCTTGGTAAAAGCCAGATGATGGGCGAGAGAAACTTCTGTCTATTTTG
TGCTTGGCGCTCTCATCATCCGGAGAGGGCGTGGCTAGCGGCTGGGTTTT
GGCTCGTGTTGATCGCCGATGCTGTAAGCTTCGTTGTTGGGGTGTCTACC
CTTCGTAAGTACGAGCAAAAAGTCTCGTTTCTACCCGATGTATATATGTT
TTCGTTGTAATACTCACAACTCCTTCCCCCTTCAAGTGCTCTCGCATTTT
CGTGGCAATGCCCGGGCGATGTCTGCAATTGTCTTTCCTCTTCGTTCTCC
CAAGGAGGGCAACTCCAATCCACGAATTCTCCTCTCCTACGTGTAG
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Coding sequence (CDS) from alignment at NODE_1524_length_9953_cov_3.701683:1115..1460-

>Gcaud9342.t1 ID=Gcaud9342.t1|Name=Gcaud9342.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=264bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1115..1460- (Gracilaria caudata M_176_S67 male)
ATGCTTGGTAAAAGCCAGATGATGGGCGAGAGAAACTTCTGTCTATTTTG
TGCTTGGCGCTCTCATCATCCGGAGAGGGCGTGGCTAGCGGCTGGGTTTT
GGCTCGTGTTGATCGCCGATGCTGTAAGCTTCGTTGTTGGGGTGTCTACC
CTTCTGCTCTCGCATTTTCGTGGCAATGCCCGGGCGATGTCTGCAATTGT
CTTTCCTCTTCGTTCTCCCAAGGAGGGCAACTCCAATCCACGAATTCTCC
TCTCCTACGTGTAG
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