Gcaud211.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud211.t1
Unique Name	Gcaud211.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1523_length_9973_cov_4.266646	contig	NODE_1523_length_9973_cov_4.266646:4503..6230 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1117318.PRUB_07405
Preferred name	nfdA_2
PFAMs	Amidohydro_3
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.17e-114
EggNOG OGs	COG1574@1\|root,COG1574@2\|Bacteria,1MWP2@1224\|Proteobacteria,1RNB7@1236\|Gammaproteobacteria,2Q4EC@267888\|Pseudoalteromonadaceae
Description	metal-dependent hydrolase with the TIM-barrel fold
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud211	Gcaud211	Gracilaria caudata M_176_S67 male	gene	NODE_1523_length_9973_cov_4.266646 4503..6230 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud211.t1.stop1	Gcaud211.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1523_length_9973_cov_4.266646 4503..4505 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud211.t1.CDS1	Gcaud211.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1523_length_9973_cov_4.266646 4503..6230 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud211.t1.exon1	Gcaud211.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1523_length_9973_cov_4.266646 4503..6230 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud211.t1.start1	Gcaud211.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1523_length_9973_cov_4.266646 6228..6230 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud211.t1	Gcaud211.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1523_length_9973_cov_4.266646 4503..6230 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230-
coding sequence from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230-

mRNA sequence

>Gcaud211.t1 ID=Gcaud211.t1|Name=Gcaud211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp
MDGLMESADTTSSAPGSKIFHNGIIRPMTSGDATVTVEAIATDGSDIIAS
GTLDDCRKAASNAEIIDLRGRTLLPGFIDSHVHLLTTAVVKMFIWVFRVE
GERLADVYTLETCYEKMRSVLAGRRRRGRSGADSWIIAVGLDPPVFTDTK
PGDWRDPTADDLDKNISDEVPVVIFNASFHFAYANTKAMERTGMFRENGV
FVEDEVFELAGPIFLEICQERPLRFVLKCLQGLRDLLNDAACKGITLMWD
AMLGTTFSRLELDFLNFLAEKSIMPVRFGGALKVLTKDHLRMWKDAGVTP
DTFKSETFRVPCVKLTADASAQGLTAFMHDKYPYPNPYINNEFPYGIWNF
ENQDFPSLVKAIDNDGWSLMIHCNGNHGMDRVLEAIAALNAGNPAAKQKR
HRTEHTTYLTDDAIKRFVENGLSPSFLIGHVGYWGYAYKTKIFPKLAPLV
VRTRSCVDAGLRITLHSDMAVSPLGAVRMVEQSVTRTMEADPAEGVLSPT
EKLTMAQALRAVTYDAAWQCHMDDVCGELVVGKKADFVILHKDPMSVDDA
AGLREHVKVSETWMNGKLVYDDGES*

spliced messenger RNA

>Gcaud211.t1 ID=Gcaud211.t1|Name=Gcaud211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGCCTCATGGAAAGTGCCGATACTACTTCGTCCGCCCCGGGATC
GAAGATATTCCACAACGGCATCATCCGTCCCATGACATCCGGTGATGCCA
CCGTCACCGTGGAAGCCATAGCCACAGACGGCTCCGATATTATTGCCTCT
GGTACCCTCGACGACTGCCGAAAAGCCGCTTCCAACGCCGAAATCATCGA
CCTGCGAGGGCGCACACTCCTTCCGGGTTTCATCGACAGTCACGTTCACC
TCCTCACCACTGCTGTCGTTAAAATGTTTATCTGGGTTTTCCGCGTTGAA
GGCGAGCGTCTTGCTGATGTGTACACACTGGAAACCTGCTACGAGAAAAT
GCGCTCCGTCCTGGCAGGCCGTCGTCGCCGTGGGCGCTCCGGCGCGGACA
GCTGGATTATAGCCGTAGGCCTCGATCCGCCCGTGTTCACTGACACCAAG
CCAGGCGATTGGAGAGACCCCACGGCAGATGATCTTGACAAAAACATTTC
CGATGAAGTGCCAGTGGTCATTTTCAATGCGTCTTTCCACTTTGCCTACG
CCAATACGAAGGCAATGGAGCGCACAGGCATGTTTAGAGAGAACGGGGTG
TTTGTCGAGGACGAGGTCTTTGAGCTGGCTGGGCCAATCTTCCTAGAGAT
TTGTCAAGAACGGCCTCTCCGTTTCGTCCTTAAATGTCTGCAGGGCTTGC
GCGACTTGCTGAACGATGCAGCTTGCAAGGGCATCACGCTGATGTGGGAC
GCTATGCTGGGCACGACGTTTTCTCGCCTCGAACTCGACTTTCTCAACTT
CTTGGCTGAAAAGAGTATTATGCCTGTAAGATTCGGGGGTGCGCTGAAGG
TTCTTACCAAGGACCATTTACGGATGTGGAAGGATGCCGGTGTGACACCA
GACACGTTTAAGAGCGAAACGTTCCGAGTGCCCTGTGTTAAACTCACAGC
GGACGCGTCGGCGCAAGGCCTTACGGCTTTTATGCACGACAAATATCCAT
ACCCCAACCCGTACATCAACAATGAGTTTCCGTACGGCATCTGGAACTTC
GAGAACCAGGATTTCCCGTCACTCGTTAAGGCCATAGATAACGACGGGTG
GTCGCTAATGATTCACTGCAATGGGAATCATGGTATGGACAGAGTGTTGG
AAGCCATTGCGGCTCTGAATGCCGGGAATCCAGCTGCGAAGCAGAAGCGT
CACCGCACGGAGCATACGACATATCTGACGGACGATGCGATTAAACGCTT
TGTGGAGAATGGTTTATCGCCAAGCTTCCTGATAGGGCACGTCGGGTACT
GGGGGTATGCATACAAGACCAAGATATTCCCCAAGCTTGCACCGCTGGTT
GTCCGCACACGGAGCTGTGTGGATGCCGGGCTGCGCATCACGCTGCACTC
AGATATGGCAGTGTCCCCTCTTGGCGCAGTGCGTATGGTTGAGCAGTCGG
TCACGCGAACCATGGAGGCCGACCCCGCCGAGGGGGTGCTGTCACCCACA
GAGAAGCTAACAATGGCGCAGGCATTGCGTGCGGTGACGTATGATGCAGC
ATGGCAGTGCCACATGGACGATGTGTGCGGAGAGTTGGTGGTGGGGAAGA
AGGCCGATTTCGTCATACTGCACAAGGACCCCATGAGCGTCGATGACGCT
GCAGGACTGCGCGAGCATGTGAAAGTTTCCGAGACTTGGATGAACGGCAA
GTTGGTGTATGATGACGGTGAGTCTTGA

protein sequence of Gcaud211.t1

>Gcaud211.t1 ID=Gcaud211.t1|Name=Gcaud211.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=576bp
MDGLMESADTTSSAPGSKIFHNGIIRPMTSGDATVTVEAIATDGSDIIAS
GTLDDCRKAASNAEIIDLRGRTLLPGFIDSHVHLLTTAVVKMFIWVFRVE
GERLADVYTLETCYEKMRSVLAGRRRRGRSGADSWIIAVGLDPPVFTDTK
PGDWRDPTADDLDKNISDEVPVVIFNASFHFAYANTKAMERTGMFRENGV
FVEDEVFELAGPIFLEICQERPLRFVLKCLQGLRDLLNDAACKGITLMWD
AMLGTTFSRLELDFLNFLAEKSIMPVRFGGALKVLTKDHLRMWKDAGVTP
DTFKSETFRVPCVKLTADASAQGLTAFMHDKYPYPNPYINNEFPYGIWNF
ENQDFPSLVKAIDNDGWSLMIHCNGNHGMDRVLEAIAALNAGNPAAKQKR
HRTEHTTYLTDDAIKRFVENGLSPSFLIGHVGYWGYAYKTKIFPKLAPLV
VRTRSCVDAGLRITLHSDMAVSPLGAVRMVEQSVTRTMEADPAEGVLSPT
EKLTMAQALRAVTYDAAWQCHMDDVCGELVVGKKADFVILHKDPMSVDDA
AGLREHVKVSETWMNGKLVYDDGES*

mRNA from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud211.t1 ID=Gcaud211.t1|Name=Gcaud211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230- (Gracilaria caudata M_176_S67 male)
ATGGATGGCCTCATGGAAAGTGCCGATACTACTTCGTCCGCCCCGGGATC
GAAGATATTCCACAACGGCATCATCCGTCCCATGACATCCGGTGATGCCA
CCGTCACCGTGGAAGCCATAGCCACAGACGGCTCCGATATTATTGCCTCT
GGTACCCTCGACGACTGCCGAAAAGCCGCTTCCAACGCCGAAATCATCGA
CCTGCGAGGGCGCACACTCCTTCCGGGTTTCATCGACAGTCACGTTCACC
TCCTCACCACTGCTGTCGTTAAAATGTTTATCTGGGTTTTCCGCGTTGAA
GGCGAGCGTCTTGCTGATGTGTACACACTGGAAACCTGCTACGAGAAAAT
GCGCTCCGTCCTGGCAGGCCGTCGTCGCCGTGGGCGCTCCGGCGCGGACA
GCTGGATTATAGCCGTAGGCCTCGATCCGCCCGTGTTCACTGACACCAAG
CCAGGCGATTGGAGAGACCCCACGGCAGATGATCTTGACAAAAACATTTC
CGATGAAGTGCCAGTGGTCATTTTCAATGCGTCTTTCCACTTTGCCTACG
CCAATACGAAGGCAATGGAGCGCACAGGCATGTTTAGAGAGAACGGGGTG
TTTGTCGAGGACGAGGTCTTTGAGCTGGCTGGGCCAATCTTCCTAGAGAT
TTGTCAAGAACGGCCTCTCCGTTTCGTCCTTAAATGTCTGCAGGGCTTGC
GCGACTTGCTGAACGATGCAGCTTGCAAGGGCATCACGCTGATGTGGGAC
GCTATGCTGGGCACGACGTTTTCTCGCCTCGAACTCGACTTTCTCAACTT
CTTGGCTGAAAAGAGTATTATGCCTGTAAGATTCGGGGGTGCGCTGAAGG
TTCTTACCAAGGACCATTTACGGATGTGGAAGGATGCCGGTGTGACACCA
GACACGTTTAAGAGCGAAACGTTCCGAGTGCCCTGTGTTAAACTCACAGC
GGACGCGTCGGCGCAAGGCCTTACGGCTTTTATGCACGACAAATATCCAT
ACCCCAACCCGTACATCAACAATGAGTTTCCGTACGGCATCTGGAACTTC
GAGAACCAGGATTTCCCGTCACTCGTTAAGGCCATAGATAACGACGGGTG
GTCGCTAATGATTCACTGCAATGGGAATCATGGTATGGACAGAGTGTTGG
AAGCCATTGCGGCTCTGAATGCCGGGAATCCAGCTGCGAAGCAGAAGCGT
CACCGCACGGAGCATACGACATATCTGACGGACGATGCGATTAAACGCTT
TGTGGAGAATGGTTTATCGCCAAGCTTCCTGATAGGGCACGTCGGGTACT
GGGGGTATGCATACAAGACCAAGATATTCCCCAAGCTTGCACCGCTGGTT
GTCCGCACACGGAGCTGTGTGGATGCCGGGCTGCGCATCACGCTGCACTC
AGATATGGCAGTGTCCCCTCTTGGCGCAGTGCGTATGGTTGAGCAGTCGG
TCACGCGAACCATGGAGGCCGACCCCGCCGAGGGGGTGCTGTCACCCACA
GAGAAGCTAACAATGGCGCAGGCATTGCGTGCGGTGACGTATGATGCAGC
ATGGCAGTGCCACATGGACGATGTGTGCGGAGAGTTGGTGGTGGGGAAGA
AGGCCGATTTCGTCATACTGCACAAGGACCCCATGAGCGTCGATGACGCT
GCAGGACTGCGCGAGCATGTGAAAGTTTCCGAGACTTGGATGAACGGCAA
GTTGGTGTATGATGACGGTGAGTCTTGA

Coding sequence (CDS) from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230-

>Gcaud211.t1 ID=Gcaud211.t1|Name=Gcaud211.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1728bp|location=Sequence derived from alignment at NODE_1523_length_9973_cov_4.266646:4503..6230- (Gracilaria caudata M_176_S67 male)
ATGGATGGCCTCATGGAAAGTGCCGATACTACTTCGTCCGCCCCGGGATC
GAAGATATTCCACAACGGCATCATCCGTCCCATGACATCCGGTGATGCCA
CCGTCACCGTGGAAGCCATAGCCACAGACGGCTCCGATATTATTGCCTCT
GGTACCCTCGACGACTGCCGAAAAGCCGCTTCCAACGCCGAAATCATCGA
CCTGCGAGGGCGCACACTCCTTCCGGGTTTCATCGACAGTCACGTTCACC
TCCTCACCACTGCTGTCGTTAAAATGTTTATCTGGGTTTTCCGCGTTGAA
GGCGAGCGTCTTGCTGATGTGTACACACTGGAAACCTGCTACGAGAAAAT
GCGCTCCGTCCTGGCAGGCCGTCGTCGCCGTGGGCGCTCCGGCGCGGACA
GCTGGATTATAGCCGTAGGCCTCGATCCGCCCGTGTTCACTGACACCAAG
CCAGGCGATTGGAGAGACCCCACGGCAGATGATCTTGACAAAAACATTTC
CGATGAAGTGCCAGTGGTCATTTTCAATGCGTCTTTCCACTTTGCCTACG
CCAATACGAAGGCAATGGAGCGCACAGGCATGTTTAGAGAGAACGGGGTG
TTTGTCGAGGACGAGGTCTTTGAGCTGGCTGGGCCAATCTTCCTAGAGAT
TTGTCAAGAACGGCCTCTCCGTTTCGTCCTTAAATGTCTGCAGGGCTTGC
GCGACTTGCTGAACGATGCAGCTTGCAAGGGCATCACGCTGATGTGGGAC
GCTATGCTGGGCACGACGTTTTCTCGCCTCGAACTCGACTTTCTCAACTT
CTTGGCTGAAAAGAGTATTATGCCTGTAAGATTCGGGGGTGCGCTGAAGG
TTCTTACCAAGGACCATTTACGGATGTGGAAGGATGCCGGTGTGACACCA
GACACGTTTAAGAGCGAAACGTTCCGAGTGCCCTGTGTTAAACTCACAGC
GGACGCGTCGGCGCAAGGCCTTACGGCTTTTATGCACGACAAATATCCAT
ACCCCAACCCGTACATCAACAATGAGTTTCCGTACGGCATCTGGAACTTC
GAGAACCAGGATTTCCCGTCACTCGTTAAGGCCATAGATAACGACGGGTG
GTCGCTAATGATTCACTGCAATGGGAATCATGGTATGGACAGAGTGTTGG
AAGCCATTGCGGCTCTGAATGCCGGGAATCCAGCTGCGAAGCAGAAGCGT
CACCGCACGGAGCATACGACATATCTGACGGACGATGCGATTAAACGCTT
TGTGGAGAATGGTTTATCGCCAAGCTTCCTGATAGGGCACGTCGGGTACT
GGGGGTATGCATACAAGACCAAGATATTCCCCAAGCTTGCACCGCTGGTT
GTCCGCACACGGAGCTGTGTGGATGCCGGGCTGCGCATCACGCTGCACTC
AGATATGGCAGTGTCCCCTCTTGGCGCAGTGCGTATGGTTGAGCAGTCGG
TCACGCGAACCATGGAGGCCGACCCCGCCGAGGGGGTGCTGTCACCCACA
GAGAAGCTAACAATGGCGCAGGCATTGCGTGCGGTGACGTATGATGCAGC
ATGGCAGTGCCACATGGACGATGTGTGCGGAGAGTTGGTGGTGGGGAAGA
AGGCCGATTTCGTCATACTGCACAAGGACCCCATGAGCGTCGATGACGCT
GCAGGACTGCGCGAGCATGTGAAAGTTTCCGAGACTTGGATGAACGGCAA
GTTGGTGTATGATGACGGTGAGTCTTGA