Gcaud8259.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8259.t1
Unique Name	Gcaud8259.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1520_length_9983_cov_4.292357	contig	NODE_1520_length_9983_cov_4.292357:7419..8822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_5060
PFAMs	SNase
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K01174
Evalue	1.07e-83
EggNOG OGs	COG1525@1\|root,COG1525@2\|Bacteria,1G46T@1117\|Cyanobacteria
EC	3.1.31.1
Description	Nuclease (SNase-like)
COG category	L
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8259	Gcaud8259	Gracilaria caudata M_176_S67 male	gene	NODE_1520_length_9983_cov_4.292357 7419..8822 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8259.t1.stop1	Gcaud8259.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1520_length_9983_cov_4.292357 7419..7421 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8259.t1.CDS1	Gcaud8259.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1520_length_9983_cov_4.292357 7419..8822 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8259.t1.exon1	Gcaud8259.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1520_length_9983_cov_4.292357 7419..8822 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8259.t1.start1	Gcaud8259.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1520_length_9983_cov_4.292357 8820..8822 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8259.t1	Gcaud8259.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1520_length_9983_cov_4.292357 7419..8822 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822-
coding sequence from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822-

mRNA sequence

>Gcaud8259.t1 ID=Gcaud8259.t1|Name=Gcaud8259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=468bp
MFTNGMNTAASLIEGTSVRVRRERVVDGDTIRAYPPNASSAESLRILNLD
TEESFKFGSKPATPWGKVAKRHASEFFKDQTEVIIEFPGNESVEECLVKY
RGTFGRLLVWVHRLDGVDFTEHMIRLGFSPYYNKYGNAEFESHHRRYILA
ERDAQMAERGVWDQVKVNGRVIRDYPTLCTWWSLRADIIDRYRAARKSGV
VVYNTRKDFSALREEAEREATVTVFTEVRSIRRVSSRDAAVASIGSDDRP
VQIYVPDLASKEAEQILELFSTRYMGTEATPRRGYCYLRGKLTALGDGVR
LSVERPFDVMDELWMTDEVYAVSKDVEEVRSNVDANRESESENAVGDPVG
GPPPKKPRNAGSGAGLVRISALLPNPVGRDLGNETVTLTATGSDVNLTGW
ALTDKSGSKFPLDGLVTKDGRSFTLSGGLRLSNSGDAVKLLDAGGVGVHE
VSYNKRDVKEGREIVFR*

spliced messenger RNA

>Gcaud8259.t1 ID=Gcaud8259.t1|Name=Gcaud8259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCAACGGCATGAATACAGCTGCCAGTCTTATTGAAGGTACTTC
TGTGCGCGTCCGAAGAGAGCGCGTCGTTGACGGAGACACCATCCGCGCGT
ATCCACCAAATGCCTCTTCAGCAGAATCACTTCGTATCCTGAACCTGGAT
ACGGAGGAATCGTTCAAGTTCGGGTCTAAGCCTGCTACACCGTGGGGAAA
AGTTGCGAAACGGCACGCATCTGAGTTCTTTAAGGACCAAACTGAAGTCA
TTATTGAGTTCCCAGGGAACGAATCCGTCGAAGAGTGTCTTGTTAAGTAT
CGCGGCACGTTTGGGCGATTGTTGGTTTGGGTTCATCGTCTTGATGGCGT
TGACTTCACTGAACATATGATACGCCTTGGATTCAGCCCTTACTATAACA
AATATGGAAATGCAGAGTTTGAGAGTCACCACAGACGCTACATTCTAGCG
GAACGCGATGCCCAAATGGCTGAAAGAGGTGTTTGGGACCAAGTGAAGGT
GAATGGACGCGTGATCCGCGACTACCCAACTTTGTGCACATGGTGGAGTT
TACGCGCTGATATCATAGATCGTTACCGTGCCGCGAGGAAGAGCGGAGTT
GTGGTGTACAATACCCGCAAGGACTTCTCGGCACTCAGGGAAGAAGCCGA
GAGGGAAGCTACCGTCACCGTCTTTACTGAAGTTCGGAGTATTCGTCGCG
TTTCAAGCCGGGATGCCGCTGTTGCCAGTATTGGTAGTGATGACCGCCCT
GTGCAGATTTATGTCCCAGACTTGGCTTCAAAGGAGGCAGAACAGATTCT
CGAGTTATTCAGCACAAGGTATATGGGAACTGAGGCCACTCCCCGTCGGG
GGTACTGTTACTTGAGGGGAAAACTGACTGCTCTTGGAGATGGTGTCAGG
CTTTCTGTGGAACGCCCATTCGATGTCATGGATGAGCTTTGGATGACCGA
CGAGGTGTATGCTGTGTCGAAGGACGTAGAAGAAGTCAGAAGTAATGTGG
ATGCTAACAGGGAAAGTGAAAGTGAAAACGCAGTGGGGGATCCTGTCGGA
GGTCCCCCTCCGAAGAAGCCGAGAAATGCAGGCTCTGGAGCAGGCCTAGT
GCGCATATCGGCGTTGCTCCCGAATCCTGTTGGGCGAGATCTGGGGAACG
AGACCGTAACCCTTACGGCAACGGGCAGTGATGTTAATTTGACTGGATGG
GCGCTGACTGATAAATCAGGCAGCAAGTTCCCTCTGGACGGGCTTGTTAC
GAAAGACGGAAGATCATTTACGCTTAGTGGTGGGTTGAGGCTCAGCAATT
CCGGGGACGCTGTGAAACTGCTTGATGCGGGGGGTGTTGGAGTTCATGAG
GTTTCTTACAACAAGAGAGACGTGAAGGAAGGACGGGAAATTGTTTTCCG
TTAA

protein sequence of Gcaud8259.t1

>Gcaud8259.t1 ID=Gcaud8259.t1|Name=Gcaud8259.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=468bp
MFTNGMNTAASLIEGTSVRVRRERVVDGDTIRAYPPNASSAESLRILNLD
TEESFKFGSKPATPWGKVAKRHASEFFKDQTEVIIEFPGNESVEECLVKY
RGTFGRLLVWVHRLDGVDFTEHMIRLGFSPYYNKYGNAEFESHHRRYILA
ERDAQMAERGVWDQVKVNGRVIRDYPTLCTWWSLRADIIDRYRAARKSGV
VVYNTRKDFSALREEAEREATVTVFTEVRSIRRVSSRDAAVASIGSDDRP
VQIYVPDLASKEAEQILELFSTRYMGTEATPRRGYCYLRGKLTALGDGVR
LSVERPFDVMDELWMTDEVYAVSKDVEEVRSNVDANRESESENAVGDPVG
GPPPKKPRNAGSGAGLVRISALLPNPVGRDLGNETVTLTATGSDVNLTGW
ALTDKSGSKFPLDGLVTKDGRSFTLSGGLRLSNSGDAVKLLDAGGVGVHE
VSYNKRDVKEGREIVFR*

mRNA from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8259.t1 ID=Gcaud8259.t1|Name=Gcaud8259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822- (Gracilaria caudata M_176_S67 male)
ATGTTCACCAACGGCATGAATACAGCTGCCAGTCTTATTGAAGGTACTTC
TGTGCGCGTCCGAAGAGAGCGCGTCGTTGACGGAGACACCATCCGCGCGT
ATCCACCAAATGCCTCTTCAGCAGAATCACTTCGTATCCTGAACCTGGAT
ACGGAGGAATCGTTCAAGTTCGGGTCTAAGCCTGCTACACCGTGGGGAAA
AGTTGCGAAACGGCACGCATCTGAGTTCTTTAAGGACCAAACTGAAGTCA
TTATTGAGTTCCCAGGGAACGAATCCGTCGAAGAGTGTCTTGTTAAGTAT
CGCGGCACGTTTGGGCGATTGTTGGTTTGGGTTCATCGTCTTGATGGCGT
TGACTTCACTGAACATATGATACGCCTTGGATTCAGCCCTTACTATAACA
AATATGGAAATGCAGAGTTTGAGAGTCACCACAGACGCTACATTCTAGCG
GAACGCGATGCCCAAATGGCTGAAAGAGGTGTTTGGGACCAAGTGAAGGT
GAATGGACGCGTGATCCGCGACTACCCAACTTTGTGCACATGGTGGAGTT
TACGCGCTGATATCATAGATCGTTACCGTGCCGCGAGGAAGAGCGGAGTT
GTGGTGTACAATACCCGCAAGGACTTCTCGGCACTCAGGGAAGAAGCCGA
GAGGGAAGCTACCGTCACCGTCTTTACTGAAGTTCGGAGTATTCGTCGCG
TTTCAAGCCGGGATGCCGCTGTTGCCAGTATTGGTAGTGATGACCGCCCT
GTGCAGATTTATGTCCCAGACTTGGCTTCAAAGGAGGCAGAACAGATTCT
CGAGTTATTCAGCACAAGGTATATGGGAACTGAGGCCACTCCCCGTCGGG
GGTACTGTTACTTGAGGGGAAAACTGACTGCTCTTGGAGATGGTGTCAGG
CTTTCTGTGGAACGCCCATTCGATGTCATGGATGAGCTTTGGATGACCGA
CGAGGTGTATGCTGTGTCGAAGGACGTAGAAGAAGTCAGAAGTAATGTGG
ATGCTAACAGGGAAAGTGAAAGTGAAAACGCAGTGGGGGATCCTGTCGGA
GGTCCCCCTCCGAAGAAGCCGAGAAATGCAGGCTCTGGAGCAGGCCTAGT
GCGCATATCGGCGTTGCTCCCGAATCCTGTTGGGCGAGATCTGGGGAACG
AGACCGTAACCCTTACGGCAACGGGCAGTGATGTTAATTTGACTGGATGG
GCGCTGACTGATAAATCAGGCAGCAAGTTCCCTCTGGACGGGCTTGTTAC
GAAAGACGGAAGATCATTTACGCTTAGTGGTGGGTTGAGGCTCAGCAATT
CCGGGGACGCTGTGAAACTGCTTGATGCGGGGGGTGTTGGAGTTCATGAG
GTTTCTTACAACAAGAGAGACGTGAAGGAAGGACGGGAAATTGTTTTCCG
TTAA

Coding sequence (CDS) from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822-

>Gcaud8259.t1 ID=Gcaud8259.t1|Name=Gcaud8259.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1404bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:7419..8822- (Gracilaria caudata M_176_S67 male)
ATGTTCACCAACGGCATGAATACAGCTGCCAGTCTTATTGAAGGTACTTC
TGTGCGCGTCCGAAGAGAGCGCGTCGTTGACGGAGACACCATCCGCGCGT
ATCCACCAAATGCCTCTTCAGCAGAATCACTTCGTATCCTGAACCTGGAT
ACGGAGGAATCGTTCAAGTTCGGGTCTAAGCCTGCTACACCGTGGGGAAA
AGTTGCGAAACGGCACGCATCTGAGTTCTTTAAGGACCAAACTGAAGTCA
TTATTGAGTTCCCAGGGAACGAATCCGTCGAAGAGTGTCTTGTTAAGTAT
CGCGGCACGTTTGGGCGATTGTTGGTTTGGGTTCATCGTCTTGATGGCGT
TGACTTCACTGAACATATGATACGCCTTGGATTCAGCCCTTACTATAACA
AATATGGAAATGCAGAGTTTGAGAGTCACCACAGACGCTACATTCTAGCG
GAACGCGATGCCCAAATGGCTGAAAGAGGTGTTTGGGACCAAGTGAAGGT
GAATGGACGCGTGATCCGCGACTACCCAACTTTGTGCACATGGTGGAGTT
TACGCGCTGATATCATAGATCGTTACCGTGCCGCGAGGAAGAGCGGAGTT
GTGGTGTACAATACCCGCAAGGACTTCTCGGCACTCAGGGAAGAAGCCGA
GAGGGAAGCTACCGTCACCGTCTTTACTGAAGTTCGGAGTATTCGTCGCG
TTTCAAGCCGGGATGCCGCTGTTGCCAGTATTGGTAGTGATGACCGCCCT
GTGCAGATTTATGTCCCAGACTTGGCTTCAAAGGAGGCAGAACAGATTCT
CGAGTTATTCAGCACAAGGTATATGGGAACTGAGGCCACTCCCCGTCGGG
GGTACTGTTACTTGAGGGGAAAACTGACTGCTCTTGGAGATGGTGTCAGG
CTTTCTGTGGAACGCCCATTCGATGTCATGGATGAGCTTTGGATGACCGA
CGAGGTGTATGCTGTGTCGAAGGACGTAGAAGAAGTCAGAAGTAATGTGG
ATGCTAACAGGGAAAGTGAAAGTGAAAACGCAGTGGGGGATCCTGTCGGA
GGTCCCCCTCCGAAGAAGCCGAGAAATGCAGGCTCTGGAGCAGGCCTAGT
GCGCATATCGGCGTTGCTCCCGAATCCTGTTGGGCGAGATCTGGGGAACG
AGACCGTAACCCTTACGGCAACGGGCAGTGATGTTAATTTGACTGGATGG
GCGCTGACTGATAAATCAGGCAGCAAGTTCCCTCTGGACGGGCTTGTTAC
GAAAGACGGAAGATCATTTACGCTTAGTGGTGGGTTGAGGCTCAGCAATT
CCGGGGACGCTGTGAAACTGCTTGATGCGGGGGGTGTTGGAGTTCATGAG
GTTTCTTACAACAAGAGAGACGTGAAGGAAGGACGGGAAATTGTTTTCCG
TTAA