Gcaud8257.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8257.t1
Unique NameGcaud8257.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length262
Homology
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BLAST of Gcaud8257.t1 vs. uniprot
Match: A0A2V3IPH2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPH2_9FLOR)

HSP 1 Score: 246 bits (627), Expect = 6.730e-80
Identity = 108/141 (76.60%), Postives = 127/141 (90.07%), Query Frame = 0 
Query:  121 MVFLDSDVILLREDFLERLRPRTSHFDFLAAYGFDNPCRKRYGTPFNSGLMFIRAIPKVNYTQMVQMMWDMSNNNDQNIISRFVQKQYANWDTLSLRWHCRYLYKEGYDIPPKQCYTFHGRASALEQFLRRANSSLLDTWD 261
            MVFLDSDVI+LREDF++RL  RT+HFDFLAAYGFD+PC+KR+ TPFNSGLMFIR IP VNY++MV +MW ++NNNDQN+IS+FVQ+QY NWDTLSLRWHCRYLYKEGYDIP K CYTFHGR+ AL  FL++ NS+LLDTWD
Sbjct:    1 MVFLDSDVIILREDFVDRLLARTAHFDFLAAYGFDHPCKKRFHTPFNSGLMFIRTIPNVNYSKMVDVMWKLNNNNDQNMISKFVQRQYVNWDTLSLRWHCRYLYKEGYDIPAKDCYTFHGRSKALNDFLQKTNSTLLDTWD 141
[Close]
BLAST of Gcaud8257.t1 vs. uniprot
Match: A0A2V3IZX9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZX9_9FLOR)

HSP 1 Score: 184 bits (467), Expect = 9.730e-54
Identity = 95/236 (40.25%), Postives = 142/236 (60.17%), Query Frame = 0 
Query:   26 QWFSSKSSDFKVVTLAFNQTNRSDLRMMAHNCAMLSRSNHTFYIHVDNTSHPFCARCQCVRFIPKRCSCPDPSADNCAL---CEKLHFVVYALEKYKEMVFLDSDVILLREDFLERLRPRTSHFDFLAAYGFDNPCRKRYGTPFNSGLMFIRAIPKVNYTQMVQMMWDMSNNNDQNIISRFVQKQYANWDTLSLRWHCRYLYKEGY-DIPPKQCYTFHGRASALEQFLRRANSSLL 257
            Q F        V+TL ++Q  +SD   +AHNC M+S ++H F+IH D+   P+C  C C+     +C CP      C +   CEK+ F++ ++ +Y+E +FLD+D+I+++ +FL+ +  R+   DFLA+Y        RY   FNSGLMFIR +P VNYT+M   ++      DQ ++S F Q+ Y NWD+LS +WHCR L K GY D+P + CYTFH R   ++ FL R N++ L
Sbjct:   50 QHFQRPKPRLNVLTLIYDQ--KSDHINVAHNCRMISSTSHKFFIHTDDILQPYCKECTCIEHKLAQCPCPT-GTHGCQVKNPCEKVEFLIESVTRYEEFLFLDNDLIIMKPEFLDHMWARSRAHDFLASYAHLTVNSSRYLRNFNSGLMFIRRLPDVNYTKMRTSLYFHKKEQDQGVVSTFFQQNYKNWDSLSWKWHCRNL-KRGYQDVPLEACYTFHDRVE-VDDFLIRMNTTRL 280
The following BLAST results are available for this feature:
BLAST of Gcaud8257.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPH2_9FLOR6.730e-8076.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IZX9_9FLOR9.730e-5440.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain Acoord: 34..249
e-value: 2.2E-10
score: 42.3
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 61..239
IPR005069Nucleotide-diphospho-sugar transferasePFAMPF03407Nucleotid_transcoord: 116..223
e-value: 1.6E-5
score: 25.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..261
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1520_length_9983_cov_4.292357contigNODE_1520_length_9983_cov_4.292357:3095..3880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8257.t1Gcaud8257.t1Gracilaria caudata M_176_S67 malemRNANODE_1520_length_9983_cov_4.292357 3095..3880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8257.t1 ID=Gcaud8257.t1|Name=Gcaud8257.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MCAVMVLAALFGPAALQKSLKIAHPQWFSSKSSDFKVVTLAFNQTNRSDL
RMMAHNCAMLSRSNHTFYIHVDNTSHPFCARCQCVRFIPKRCSCPDPSAD
NCALCEKLHFVVYALEKYKEMVFLDSDVILLREDFLERLRPRTSHFDFLA
AYGFDNPCRKRYGTPFNSGLMFIRAIPKVNYTQMVQMMWDMSNNNDQNII
SRFVQKQYANWDTLSLRWHCRYLYKEGYDIPPKQCYTFHGRASALEQFLR
RANSSLLDTWD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR005069Nucl-diP-sugar_transferase