Gcaud3201.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3201.t2
Unique Name	Gcaud3201.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1482_length_10324_cov_4.811199	contig	NODE_1482_length_10324_cov_4.811199:6542..7486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313421.JHBV01000162_gene843
PFAMs	Glycos_transf_2
Max annot lvl	2\|Bacteria
Evalue	1.89e-30
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria
Description	Glycosyl transferase, family 2
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3201	Gcaud3201	Gracilaria caudata M_176_S67 male	gene	NODE_1482_length_10324_cov_4.811199 6542..7486 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2	Gcaud3201.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1482_length_10324_cov_4.811199 6542..7486 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2.start1	Gcaud3201.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1482_length_10324_cov_4.811199 6542..6544 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2.CDS1	Gcaud3201.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1482_length_10324_cov_4.811199 6542..6698 +
Gcaud3201.t2.CDS2	Gcaud3201.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1482_length_10324_cov_4.811199 6759..7486 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2.exon1	Gcaud3201.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1482_length_10324_cov_4.811199 6542..6698 +
Gcaud3201.t2.exon2	Gcaud3201.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1482_length_10324_cov_4.811199 6759..7486 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2.intron1	Gcaud3201.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1482_length_10324_cov_4.811199 6699..6758 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3201.t2.stop1	Gcaud3201.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1482_length_10324_cov_4.811199 7484..7486 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+
coding sequence from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+

mRNA sequence

>Gcaud3201.t2 ID=Gcaud3201.t2|Name=Gcaud3201.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=295bp
MPGITLLPGGFRPWHAAPSSLYVPLYIILGFCYALSYRIGRLFPRQTKPK
YKLVIPVFAASNDDKKLLESTVDIITSNCGYEVIVVDDCSPFPPCPKNCT
LVRHMNNQGPGSARYTGVKTALESGVYSIAFLDSDCIPQPDWAKEHAKLQ
KRVPGIWAGRTFSYGDSIIDKFHERTGTLMPSIRNGKIDDVFVAQTCNLS
VSAEVAKHVPFDTSFPMTFEDFDFCLRAVKLGYQIRISRKPILEHKFKTS
FLDFCGQAWKYGRSEKNMTDKHPSFIRDMSTCDNVALFWPKIRD*

spliced messenger RNA

>Gcaud3201.t2 ID=Gcaud3201.t2|Name=Gcaud3201.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=885bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGAATAACCCTTCTGCCTGGAGGATTTCGTCCTTGGCATGCTGC
GCCGAGTAGCTTGTACGTGCCGTTGTATATCATTCTTGGATTTTGTTATG
CACTTTCATATCGAATTGGCAGACTATTTCCGCGTCAAACAAAACCCAAA
TATAAACTCGTGATCCCCGTATTTGCTGCATCGAACGACGATAAGAAACT
GTTGGAATCTACCGTTGATATCATTACATCCAATTGTGGCTATGAGGTTA
TTGTCGTTGATGACTGCTCACCATTTCCCCCGTGTCCTAAGAACTGCACA
CTGGTTAGACATATGAACAATCAGGGACCTGGGAGCGCGAGGTACACTGG
TGTAAAAACGGCCTTAGAAAGCGGGGTCTATAGCATTGCCTTTTTGGACA
GCGATTGCATTCCACAACCCGACTGGGCTAAAGAACACGCCAAGCTACAA
AAGAGGGTGCCCGGAATCTGGGCAGGGCGCACTTTTTCATATGGGGATTC
CATAATAGACAAGTTTCATGAGCGAACTGGGACTTTGATGCCGTCAATAC
GGAATGGTAAGATTGATGATGTGTTTGTTGCTCAAACGTGCAATCTTTCT
GTATCCGCTGAGGTAGCAAAACACGTGCCGTTTGATACAAGCTTTCCAAT
GACCTTTGAAGACTTCGATTTCTGTCTTCGTGCTGTTAAGCTTGGCTACC
AAATTCGTATATCAAGGAAGCCGATATTGGAGCACAAATTCAAAACTAGT
TTCCTTGATTTTTGCGGACAAGCTTGGAAGTATGGGCGATCGGAGAAAAA
TATGACGGACAAGCATCCATCATTCATTCGAGACATGTCAACATGTGATA
ATGTAGCTTTGTTTTGGCCAAAAATTCGAGACTGA

protein sequence of Gcaud3201.t2

>Gcaud3201.t2 ID=Gcaud3201.t2|Name=Gcaud3201.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=295bp
MPGITLLPGGFRPWHAAPSSLYVPLYIILGFCYALSYRIGRLFPRQTKPK
YKLVIPVFAASNDDKKLLESTVDIITSNCGYEVIVVDDCSPFPPCPKNCT
LVRHMNNQGPGSARYTGVKTALESGVYSIAFLDSDCIPQPDWAKEHAKLQ
KRVPGIWAGRTFSYGDSIIDKFHERTGTLMPSIRNGKIDDVFVAQTCNLS
VSAEVAKHVPFDTSFPMTFEDFDFCLRAVKLGYQIRISRKPILEHKFKTS
FLDFCGQAWKYGRSEKNMTDKHPSFIRDMSTCDNVALFWPKIRD*

mRNA from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3201.t2 ID=Gcaud3201.t2|Name=Gcaud3201.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+ (Gracilaria caudata M_176_S67 male)
ATGCCTGGAATAACCCTTCTGCCTGGAGGATTTCGTCCTTGGCATGCTGC
GCCGAGTAGCTTGTACGTGCCGTTGTATATCATTCTTGGATTTTGTTATG
CACTTTCATATCGAATTGGCAGACTATTTCCGCGTCAAACAAAACCCAAA
TATAAACGTAGGACATTCAAGACAATAGTTGTCTCCAAACGTCAGGCCTC
TGACATCAGTCTTGCAGTCGTGATCCCCGTATTTGCTGCATCGAACGACG
ATAAGAAACTGTTGGAATCTACCGTTGATATCATTACATCCAATTGTGGC
TATGAGGTTATTGTCGTTGATGACTGCTCACCATTTCCCCCGTGTCCTAA
GAACTGCACACTGGTTAGACATATGAACAATCAGGGACCTGGGAGCGCGA
GGTACACTGGTGTAAAAACGGCCTTAGAAAGCGGGGTCTATAGCATTGCC
TTTTTGGACAGCGATTGCATTCCACAACCCGACTGGGCTAAAGAACACGC
CAAGCTACAAAAGAGGGTGCCCGGAATCTGGGCAGGGCGCACTTTTTCAT
ATGGGGATTCCATAATAGACAAGTTTCATGAGCGAACTGGGACTTTGATG
CCGTCAATACGGAATGGTAAGATTGATGATGTGTTTGTTGCTCAAACGTG
CAATCTTTCTGTATCCGCTGAGGTAGCAAAACACGTGCCGTTTGATACAA
GCTTTCCAATGACCTTTGAAGACTTCGATTTCTGTCTTCGTGCTGTTAAG
CTTGGCTACCAAATTCGTATATCAAGGAAGCCGATATTGGAGCACAAATT
CAAAACTAGTTTCCTTGATTTTTGCGGACAAGCTTGGAAGTATGGGCGAT
CGGAGAAAAATATGACGGACAAGCATCCATCATTCATTCGAGACATGTCA
ACATGTGATAATGTAGCTTTGTTTTGGCCAAAAATTCGAGACTGA

Coding sequence (CDS) from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+

>Gcaud3201.t2 ID=Gcaud3201.t2|Name=Gcaud3201.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=885bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:6542..7486+ (Gracilaria caudata M_176_S67 male)
ATGCCTGGAATAACCCTTCTGCCTGGAGGATTTCGTCCTTGGCATGCTGC
GCCGAGTAGCTTGTACGTGCCGTTGTATATCATTCTTGGATTTTGTTATG
CACTTTCATATCGAATTGGCAGACTATTTCCGCGTCAAACAAAACCCAAA
TATAAACTCGTGATCCCCGTATTTGCTGCATCGAACGACGATAAGAAACT
GTTGGAATCTACCGTTGATATCATTACATCCAATTGTGGCTATGAGGTTA
TTGTCGTTGATGACTGCTCACCATTTCCCCCGTGTCCTAAGAACTGCACA
CTGGTTAGACATATGAACAATCAGGGACCTGGGAGCGCGAGGTACACTGG
TGTAAAAACGGCCTTAGAAAGCGGGGTCTATAGCATTGCCTTTTTGGACA
GCGATTGCATTCCACAACCCGACTGGGCTAAAGAACACGCCAAGCTACAA
AAGAGGGTGCCCGGAATCTGGGCAGGGCGCACTTTTTCATATGGGGATTC
CATAATAGACAAGTTTCATGAGCGAACTGGGACTTTGATGCCGTCAATAC
GGAATGGTAAGATTGATGATGTGTTTGTTGCTCAAACGTGCAATCTTTCT
GTATCCGCTGAGGTAGCAAAACACGTGCCGTTTGATACAAGCTTTCCAAT
GACCTTTGAAGACTTCGATTTCTGTCTTCGTGCTGTTAAGCTTGGCTACC
AAATTCGTATATCAAGGAAGCCGATATTGGAGCACAAATTCAAAACTAGT
TTCCTTGATTTTTGCGGACAAGCTTGGAAGTATGGGCGATCGGAGAAAAA
TATGACGGACAAGCATCCATCATTCATTCGAGACATGTCAACATGTGATA
ATGTAGCTTTGTTTTGGCCAAAAATTCGAGACTGA