Gcaud2087.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2087.t1
Unique NameGcaud2087.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_14682_length_373_cov_5.414894contigNODE_14682_length_373_cov_5.414894:2..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1227349.C170_07679
Preferred nameidhA
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl91061|Bacilli
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue7.17e-35
EggNOG OGsCOG0673@1|root,COG0673@2|Bacteria,1TP83@1239|Firmicutes,4HAKY@91061|Bacilli,26QTU@186822|Paenibacillaceae
EC1.1.1.18,1.1.1.369
DescriptionOxidoreductase family, C-terminal alpha/beta domain
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2087Gcaud2087Gracilaria caudata M_176_S67 malegeneNODE_14682_length_373_cov_5.414894 2..373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2087.t1.CDS1Gcaud2087.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_14682_length_373_cov_5.414894 2..373 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2087.t1.exon1Gcaud2087.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_14682_length_373_cov_5.414894 2..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2087.t1Gcaud2087.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_14682_length_373_cov_5.414894 2..373 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2087.t1 ID=Gcaud2087.t1|Name=Gcaud2087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=124bp
DFDMARFLTGSNVASISAVGIADNPEIGAIGDLDHTLVTATFENGCIATI
DNSRASALGYDQRAEFFGTKGSVNVGNVHPNTCDSTDKDGYHSPSPLNFF
MERYAEAYVEEMKAFVDVVVNDTP
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spliced messenger RNA

>Gcaud2087.t1 ID=Gcaud2087.t1|Name=Gcaud2087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp|location=Sequence derived from alignment at NODE_14682_length_373_cov_5.414894:2..373+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GACTTTGATATGGCTCGCTTTTTGACTGGTTCTAATGTCGCTTCCATTTC
GGCCGTTGGAATTGCCGACAATCCTGAGATTGGTGCCATCGGTGATTTGG
ATCACACCCTTGTTACTGCCACTTTTGAGAATGGTTGTATTGCTACTATT
GATAATTCGCGAGCCTCTGCGCTTGGATACGATCAACGCGCCGAGTTCTT
TGGAACCAAGGGCAGCGTTAATGTTGGAAATGTGCATCCCAATACTTGCG
ATTCTACCGATAAGGATGGCTACCATTCTCCAAGTCCACTCAATTTCTTC
ATGGAAAGGTATGCTGAAGCGTATGTGGAGGAGATGAAGGCGTTTGTTGA
TGTTGTTGTCAATGATACTCCA
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protein sequence of Gcaud2087.t1

>Gcaud2087.t1 ID=Gcaud2087.t1|Name=Gcaud2087.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=124bp
DFDMARFLTGSNVASISAVGIADNPEIGAIGDLDHTLVTATFENGCIATI
DNSRASALGYDQRAEFFGTKGSVNVGNVHPNTCDSTDKDGYHSPSPLNFF
MERYAEAYVEEMKAFVDVVVNDTP
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mRNA from alignment at NODE_14682_length_373_cov_5.414894:2..373+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2087.t1 ID=Gcaud2087.t1|Name=Gcaud2087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp|location=Sequence derived from alignment at NODE_14682_length_373_cov_5.414894:2..373+ (Gracilaria caudata M_176_S67 male)
GACTTTGATATGGCTCGCTTTTTGACTGGTTCTAATGTCGCTTCCATTTC
GGCCGTTGGAATTGCCGACAATCCTGAGATTGGTGCCATCGGTGATTTGG
ATCACACCCTTGTTACTGCCACTTTTGAGAATGGTTGTATTGCTACTATT
GATAATTCGCGAGCCTCTGCGCTTGGATACGATCAACGCGCCGAGTTCTT
TGGAACCAAGGGCAGCGTTAATGTTGGAAATGTGCATCCCAATACTTGCG
ATTCTACCGATAAGGATGGCTACCATTCTCCAAGTCCACTCAATTTCTTC
ATGGAAAGGTATGCTGAAGCGTATGTGGAGGAGATGAAGGCGTTTGTTGA
TGTTGTTGTCAATGATACTCCA
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Coding sequence (CDS) from alignment at NODE_14682_length_373_cov_5.414894:2..373+

>Gcaud2087.t1 ID=Gcaud2087.t1|Name=Gcaud2087.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=372bp|location=Sequence derived from alignment at NODE_14682_length_373_cov_5.414894:2..373+ (Gracilaria caudata M_176_S67 male)
GACTTTGATATGGCTCGCTTTTTGACTGGTTCTAATGTCGCTTCCATTTC
GGCCGTTGGAATTGCCGACAATCCTGAGATTGGTGCCATCGGTGATTTGG
ATCACACCCTTGTTACTGCCACTTTTGAGAATGGTTGTATTGCTACTATT
GATAATTCGCGAGCCTCTGCGCTTGGATACGATCAACGCGCCGAGTTCTT
TGGAACCAAGGGCAGCGTTAATGTTGGAAATGTGCATCCCAATACTTGCG
ATTCTACCGATAAGGATGGCTACCATTCTCCAAGTCCACTCAATTTCTTC
ATGGAAAGGTATGCTGAAGCGTATGTGGAGGAGATGAAGGCGTTTGTTGA
TGTTGTTGTCAATGATACTCCA
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