Gcaud8274.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8274.t2
Unique NameGcaud8274.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1463_length_10453_cov_4.528759contigNODE_1463_length_10453_cov_4.528759:4051..4781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8274Gcaud8274Gracilaria caudata M_176_S67 malegeneNODE_1463_length_10453_cov_4.528759 4051..4781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2Gcaud8274.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1463_length_10453_cov_4.528759 4051..4781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2.stop1Gcaud8274.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1463_length_10453_cov_4.528759 4051..4053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2.CDS1Gcaud8274.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1463_length_10453_cov_4.528759 4051..4516 -
Gcaud8274.t2.CDS2Gcaud8274.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1463_length_10453_cov_4.528759 4597..4658 -
Gcaud8274.t2.CDS3Gcaud8274.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1463_length_10453_cov_4.528759 4776..4781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2.exon1Gcaud8274.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1463_length_10453_cov_4.528759 4051..4516 -
Gcaud8274.t2.exon2Gcaud8274.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_1463_length_10453_cov_4.528759 4597..4658 -
Gcaud8274.t2.exon3Gcaud8274.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_1463_length_10453_cov_4.528759 4776..4781 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2.intron1Gcaud8274.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_1463_length_10453_cov_4.528759 4517..4596 -
Gcaud8274.t2.intron2Gcaud8274.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_1463_length_10453_cov_4.528759 4659..4775 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8274.t2.start1Gcaud8274.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1463_length_10453_cov_4.528759 4779..4781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8274.t2 ID=Gcaud8274.t2|Name=Gcaud8274.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MGKFQLQIPFLLLEQLLLAYLRRERDGVKESKFKWISKLKNDKRVYIWGR
LLGLLLVVAPAELAALFFAFVSHNNAINWMTFFTWFDLSVVLSPRVAECT
HQAGESCSGAGSVYISTALMGTVGHASATRARWTSLLVMMAVVLVTFVVI
VLFTLRIVLKFNAGRRRGTKADVLCAK*
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spliced messenger RNA

>Gcaud8274.t2 ID=Gcaud8274.t2|Name=Gcaud8274.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:4051..4781- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAATTTCAGTTGCAGATACCATTCTTGCTATTGGAGCAGCTTTT
ACTGGCCTATTTACGGCGTGAACGAGACGGTGTGAAAGAATCCAAGTTCA
AATGGATTTCAAAGTTGAAGAATGACAAGCGTGTTTACATATGGGGGAGA
TTGCTGGGCTTACTCCTGGTGGTAGCGCCTGCGGAGCTTGCAGCGTTGTT
CTTTGCGTTTGTGAGTCATAACAATGCCATTAATTGGATGACGTTCTTCA
CGTGGTTTGACTTGTCTGTCGTATTATCTCCACGGGTGGCGGAGTGCACT
CATCAAGCGGGCGAAAGCTGTTCCGGTGCCGGAAGTGTTTACATATCTAC
GGCGCTTATGGGGACTGTTGGACATGCAAGTGCAACACGTGCAAGGTGGA
CCAGCTTGCTCGTAATGATGGCGGTAGTTCTTGTGACATTCGTGGTTATC
GTGTTGTTCACTCTTAGAATTGTTCTGAAATTCAATGCGGGACGTCGCCG
AGGTACAAAAGCTGACGTACTGTGCGCCAAGTAG
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protein sequence of Gcaud8274.t2

>Gcaud8274.t2 ID=Gcaud8274.t2|Name=Gcaud8274.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MGKFQLQIPFLLLEQLLLAYLRRERDGVKESKFKWISKLKNDKRVYIWGR
LLGLLLVVAPAELAALFFAFVSHNNAINWMTFFTWFDLSVVLSPRVAECT
HQAGESCSGAGSVYISTALMGTVGHASATRARWTSLLVMMAVVLVTFVVI
VLFTLRIVLKFNAGRRRGTKADVLCAK*
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mRNA from alignment at NODE_1463_length_10453_cov_4.528759:4051..4781-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8274.t2 ID=Gcaud8274.t2|Name=Gcaud8274.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=731bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:4051..4781- (Gracilaria caudata M_176_S67 male)
ATGGGGGTGAGTGTGGAAGGTTGTATACTTTTGCCAGAGTTAGTGCAGAT
CACATGGGCGAACAGCAAGATATCTTCGCCATTGCAACTGAAGAAAGCAG
CTTTCTAACGCCAAGACCGGAAGAAATTTCAGTTGCAGATACCATTCTTG
CTATTGGAGCAGCTTTTACTGGCCTATTTACGGCGGTGCGTATATTCTCT
AGCATCAAACAGAAGGTGAGTGAATATGATCAAACGGCCACTGTCACTGA
CATCGATTGCGACAGTGAACGAGACGGTGTGAAAGAATCCAAGTTCAAAT
GGATTTCAAAGTTGAAGAATGACAAGCGTGTTTACATATGGGGGAGATTG
CTGGGCTTACTCCTGGTGGTAGCGCCTGCGGAGCTTGCAGCGTTGTTCTT
TGCGTTTGTGAGTCATAACAATGCCATTAATTGGATGACGTTCTTCACGT
GGTTTGACTTGTCTGTCGTATTATCTCCACGGGTGGCGGAGTGCACTCAT
CAAGCGGGCGAAAGCTGTTCCGGTGCCGGAAGTGTTTACATATCTACGGC
GCTTATGGGGACTGTTGGACATGCAAGTGCAACACGTGCAAGGTGGACCA
GCTTGCTCGTAATGATGGCGGTAGTTCTTGTGACATTCGTGGTTATCGTG
TTGTTCACTCTTAGAATTGTTCTGAAATTCAATGCGGGACGTCGCCGAGG
TACAAAAGCTGACGTACTGTGCGCCAAGTAG
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Coding sequence (CDS) from alignment at NODE_1463_length_10453_cov_4.528759:4051..4781-

>Gcaud8274.t2 ID=Gcaud8274.t2|Name=Gcaud8274.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:4051..4781- (Gracilaria caudata M_176_S67 male)
ATGGGGAAATTTCAGTTGCAGATACCATTCTTGCTATTGGAGCAGCTTTT
ACTGGCCTATTTACGGCGTGAACGAGACGGTGTGAAAGAATCCAAGTTCA
AATGGATTTCAAAGTTGAAGAATGACAAGCGTGTTTACATATGGGGGAGA
TTGCTGGGCTTACTCCTGGTGGTAGCGCCTGCGGAGCTTGCAGCGTTGTT
CTTTGCGTTTGTGAGTCATAACAATGCCATTAATTGGATGACGTTCTTCA
CGTGGTTTGACTTGTCTGTCGTATTATCTCCACGGGTGGCGGAGTGCACT
CATCAAGCGGGCGAAAGCTGTTCCGGTGCCGGAAGTGTTTACATATCTAC
GGCGCTTATGGGGACTGTTGGACATGCAAGTGCAACACGTGCAAGGTGGA
CCAGCTTGCTCGTAATGATGGCGGTAGTTCTTGTGACATTCGTGGTTATC
GTGTTGTTCACTCTTAGAATTGTTCTGAAATTCAATGCGGGACGTCGCCG
AGGTACAAAAGCTGACGTACTGTGCGCCAAGTAG
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