Gcaud2876.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2876.t2
Unique Name	Gcaud2876.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1461_length_10463_cov_4.292711	contig	NODE_1461_length_10463_cov_4.292711:1236..2234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ023CT
Preferred name	METTL6
PFAMs	Methyltransf_12,Methyltransf_23
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC00113,RC00392,RC00460,RC01244
KEGG ko	ko:K00587,ko:K00599,ko:K09140
KEGG Reaction	R02671,R02912,R03955,R04496,R04939
KEGG Pathway	ko00900,ko01130,map00900,map01130
GOs	GO:0001510,GO:0002946,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue	6.7e-40
EggNOG OGs	KOG2361@1\|root,KOG2361@2759\|Eukaryota
EC	2.1.1.100
Description	tRNA (cytosine) methyltransferase activity
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2876	Gcaud2876	Gracilaria caudata M_176_S67 male	gene	NODE_1461_length_10463_cov_4.292711 1236..2234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2876.t2.start1	Gcaud2876.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1461_length_10463_cov_4.292711 1236..1238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2876.t2.CDS1	Gcaud2876.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1461_length_10463_cov_4.292711 1236..2234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2876.t2.exon1	Gcaud2876.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1461_length_10463_cov_4.292711 1236..2234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2876.t2.stop1	Gcaud2876.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1461_length_10463_cov_4.292711 2232..2234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2876.t2	Gcaud2876.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1461_length_10463_cov_4.292711 1236..2234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+
coding sequence from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+

mRNA sequence

>Gcaud2876.t2 ID=Gcaud2876.t2|Name=Gcaud2876.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp
MNCPDKQQGRPRSVPTPNPTLTVTKPQMQPSVHYGEARGARKRARAQQTQ
ARHKANADRAAELAKPPTSAAQAAERWDAFYETKPTLFKDRHILRAAFPE
LVGPHAAANPSAHVPPLLPVPRGSIVYDMPSSQCDQVLVEVGCGGGNAVY
PLLRANSRLYAFAFDFSARAVELTKSSAEYREDRITAFQGDLTIPESYVD
MILKCFPDGVHFVTAFWTLSALSPSQHSIAAKGLAALLASGGQLFVRDYA
TGDMREKRFAEREQRVHDDSSKLFLRGDGTYAYFFSKEELRDLFETSGLT
CISCEYEDRHVNNRKTQSTMRRRWVQAKFRKG*

spliced messenger RNA

>Gcaud2876.t2 ID=Gcaud2876.t2|Name=Gcaud2876.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=999bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCCCTGACAAACAGCAGGGACGTCCGCGTTCCGTCCCTACGCC
CAATCCCACACTGACTGTAACAAAGCCACAAATGCAACCGTCAGTTCACT
ACGGAGAAGCCCGCGGCGCTCGGAAGCGAGCAAGAGCACAGCAGACGCAG
GCGCGACACAAGGCAAACGCGGATCGAGCGGCAGAGCTGGCAAAACCACC
CACTTCTGCCGCACAAGCCGCTGAGCGATGGGATGCTTTCTACGAGACGA
AACCCACGCTTTTCAAGGACCGTCACATTCTGCGAGCCGCATTCCCCGAA
CTGGTCGGTCCTCACGCCGCTGCGAATCCTTCCGCACATGTCCCGCCTCT
CCTTCCAGTCCCGCGCGGATCGATTGTGTATGATATGCCGAGTTCGCAGT
GCGATCAAGTACTGGTTGAAGTTGGCTGTGGTGGTGGTAATGCTGTTTAT
CCGTTGCTTCGTGCCAATTCGCGCTTGTATGCGTTCGCATTCGACTTTAG
CGCGCGAGCGGTTGAGCTGACGAAGAGCAGTGCTGAGTATCGAGAAGATC
GAATCACAGCCTTTCAGGGCGATCTCACGATTCCAGAGAGTTACGTGGAC
ATGATCTTGAAGTGTTTTCCCGATGGGGTCCACTTCGTGACAGCGTTTTG
GACTTTGTCGGCTCTGAGCCCGTCACAGCACAGCATTGCGGCGAAGGGAC
TGGCAGCGTTGCTCGCAAGTGGGGGACAATTGTTTGTCCGGGATTACGCG
ACAGGAGATATGAGGGAAAAACGTTTTGCAGAGCGCGAGCAGCGAGTGCA
CGACGATTCCAGCAAATTGTTCTTGCGTGGGGACGGAACGTACGCGTACT
TTTTCAGTAAGGAGGAGTTGAGAGATTTGTTTGAAACCTCAGGGTTGACG
TGCATCTCGTGCGAATATGAAGATCGGCATGTTAACAATCGCAAGACACA
GTCTACGATGCGAAGAAGATGGGTGCAAGCAAAGTTTAGAAAAGGATAA

protein sequence of Gcaud2876.t2

>Gcaud2876.t2 ID=Gcaud2876.t2|Name=Gcaud2876.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
MNCPDKQQGRPRSVPTPNPTLTVTKPQMQPSVHYGEARGARKRARAQQTQ
ARHKANADRAAELAKPPTSAAQAAERWDAFYETKPTLFKDRHILRAAFPE
LVGPHAAANPSAHVPPLLPVPRGSIVYDMPSSQCDQVLVEVGCGGGNAVY
PLLRANSRLYAFAFDFSARAVELTKSSAEYREDRITAFQGDLTIPESYVD
MILKCFPDGVHFVTAFWTLSALSPSQHSIAAKGLAALLASGGQLFVRDYA
TGDMREKRFAEREQRVHDDSSKLFLRGDGTYAYFFSKEELRDLFETSGLT
CISCEYEDRHVNNRKTQSTMRRRWVQAKFRKG*

mRNA from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2876.t2 ID=Gcaud2876.t2|Name=Gcaud2876.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=999bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+ (Gracilaria caudata M_176_S67 male)
ATGAACTGCCCTGACAAACAGCAGGGACGTCCGCGTTCCGTCCCTACGCC
CAATCCCACACTGACTGTAACAAAGCCACAAATGCAACCGTCAGTTCACT
ACGGAGAAGCCCGCGGCGCTCGGAAGCGAGCAAGAGCACAGCAGACGCAG
GCGCGACACAAGGCAAACGCGGATCGAGCGGCAGAGCTGGCAAAACCACC
CACTTCTGCCGCACAAGCCGCTGAGCGATGGGATGCTTTCTACGAGACGA
AACCCACGCTTTTCAAGGACCGTCACATTCTGCGAGCCGCATTCCCCGAA
CTGGTCGGTCCTCACGCCGCTGCGAATCCTTCCGCACATGTCCCGCCTCT
CCTTCCAGTCCCGCGCGGATCGATTGTGTATGATATGCCGAGTTCGCAGT
GCGATCAAGTACTGGTTGAAGTTGGCTGTGGTGGTGGTAATGCTGTTTAT
CCGTTGCTTCGTGCCAATTCGCGCTTGTATGCGTTCGCATTCGACTTTAG
CGCGCGAGCGGTTGAGCTGACGAAGAGCAGTGCTGAGTATCGAGAAGATC
GAATCACAGCCTTTCAGGGCGATCTCACGATTCCAGAGAGTTACGTGGAC
ATGATCTTGAAGTGTTTTCCCGATGGGGTCCACTTCGTGACAGCGTTTTG
GACTTTGTCGGCTCTGAGCCCGTCACAGCACAGCATTGCGGCGAAGGGAC
TGGCAGCGTTGCTCGCAAGTGGGGGACAATTGTTTGTCCGGGATTACGCG
ACAGGAGATATGAGGGAAAAACGTTTTGCAGAGCGCGAGCAGCGAGTGCA
CGACGATTCCAGCAAATTGTTCTTGCGTGGGGACGGAACGTACGCGTACT
TTTTCAGTAAGGAGGAGTTGAGAGATTTGTTTGAAACCTCAGGGTTGACG
TGCATCTCGTGCGAATATGAAGATCGGCATGTTAACAATCGCAAGACACA
GTCTACGATGCGAAGAAGATGGGTGCAAGCAAAGTTTAGAAAAGGATAA

Coding sequence (CDS) from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+

>Gcaud2876.t2 ID=Gcaud2876.t2|Name=Gcaud2876.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=999bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:1236..2234+ (Gracilaria caudata M_176_S67 male)
ATGAACTGCCCTGACAAACAGCAGGGACGTCCGCGTTCCGTCCCTACGCC
CAATCCCACACTGACTGTAACAAAGCCACAAATGCAACCGTCAGTTCACT
ACGGAGAAGCCCGCGGCGCTCGGAAGCGAGCAAGAGCACAGCAGACGCAG
GCGCGACACAAGGCAAACGCGGATCGAGCGGCAGAGCTGGCAAAACCACC
CACTTCTGCCGCACAAGCCGCTGAGCGATGGGATGCTTTCTACGAGACGA
AACCCACGCTTTTCAAGGACCGTCACATTCTGCGAGCCGCATTCCCCGAA
CTGGTCGGTCCTCACGCCGCTGCGAATCCTTCCGCACATGTCCCGCCTCT
CCTTCCAGTCCCGCGCGGATCGATTGTGTATGATATGCCGAGTTCGCAGT
GCGATCAAGTACTGGTTGAAGTTGGCTGTGGTGGTGGTAATGCTGTTTAT
CCGTTGCTTCGTGCCAATTCGCGCTTGTATGCGTTCGCATTCGACTTTAG
CGCGCGAGCGGTTGAGCTGACGAAGAGCAGTGCTGAGTATCGAGAAGATC
GAATCACAGCCTTTCAGGGCGATCTCACGATTCCAGAGAGTTACGTGGAC
ATGATCTTGAAGTGTTTTCCCGATGGGGTCCACTTCGTGACAGCGTTTTG
GACTTTGTCGGCTCTGAGCCCGTCACAGCACAGCATTGCGGCGAAGGGAC
TGGCAGCGTTGCTCGCAAGTGGGGGACAATTGTTTGTCCGGGATTACGCG
ACAGGAGATATGAGGGAAAAACGTTTTGCAGAGCGCGAGCAGCGAGTGCA
CGACGATTCCAGCAAATTGTTCTTGCGTGGGGACGGAACGTACGCGTACT
TTTTCAGTAAGGAGGAGTTGAGAGATTTGTTTGAAACCTCAGGGTTGACG
TGCATCTCGTGCGAATATGAAGATCGGCATGTTAACAATCGCAAGACACA
GTCTACGATGCGAAGAAGATGGGTGCAAGCAAAGTTTAGAAAAGGATAA