Gcaud6909.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6909.t1
Unique NameGcaud6909.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length346
Homology
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3IMC1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 5.280e-97
Identity = 158/342 (46.20%), Postives = 219/342 (64.04%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNINIQRAGNVSLENGDVRCSKNPVYRSDFIVLSEPHKLPKSGVHMGCVSDDFCVFTFQQQNFTFLSEPFPRDMASGLRSGEIDIELEYLKTELLFNSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWALYVDKREGELVENNPTLSYFNDDNHPVVWVSE 342
            M TI LK+Q+VSLIITIISF  E +F++AL    ++R+ + L + + + VRNY+ R+  +   S LLF  LEI+VSFF+DP  ++ F+S PC+ +D + R    Q +FREAD +E  CQ  R N N  R GNVSL +G VRCSK   Y  D +  SE  KLP S   + C  +  CVF F+QQN T+ S     D+ + LRSG +D E+ +LKTELLF+S+ +L  FA RA DAF + V DP+E+RRR FLGSAK+NCPFV E  D T VP  ++  L+ +W+ +L+ +VL     R V F+V N LHWA+ V KR  E V+++P ++   +D    ++VSE
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGET-CVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSE 341          
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 171 bits (432), Expect = 2.070e-46
Identity = 122/363 (33.61%), Postives = 183/363 (50.41%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIISRTPQDQA-QFREADIVESACQVQRKNINIQRAGNVSLENGDVRCSKNPVYRSDFIVLSEPHKLPKSGVHMGCVS------------DDFCVF----TFQQQNF---TFLSEPFPRDMASGLRSGEIDIELEYLKTELLF--NSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWALYVDKREGELVENNPTLSYFNDDNHPVVWVS 341
            M  IPLKSQ+VSLI TIIS   E   L AL +  N  +   L K   VSV  +Q R+  L   +   FF +E+++SF++DPA    F+S PC+ ++ ++R   D      E  IV S  +    NI + R GN S+E   V C+++    +  +   EPH     G      S            D FCV     ++Q  +     + S+ F  D  S L+     I+  +L T +    N+T LL  FA R   A+ +N+ DP+E+RR  FLGS +  C F   T++ATEVP FIIV +   W+ SL +Y +    +R V +++ N +HWA    +R  E V  +P++S   ++ H V++VS
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFL-RVGNYSMETRKVECAES----ATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIK--FLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQF-QRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVS 355          
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 145 bits (367), Expect = 1.400e-36
Identity = 105/369 (28.46%), Postives = 178/369 (48.24%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNINIQRAGNVSLE---NGDVRCSKNPVYRS------DFIVLSEPHK------------LPKSGVHMGCVSDDFCVFTFQ-QQNFTFLSEPFPRDMASGLRSGEI------DIELEYLKTELLFNSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWALYVDKREGELVENNPTLSYFNDDNHPVVWVS 341
            M  IPLKSQFVSLI+T+IS  AE     AL       +   L K R VSVR ++ R+  L   ++++F  LE+++SFF+DPA   +FR+  C+ +D I           + D +   C   +K+  +QRAGN SL       VRC K+ +Y         F + +                LP   V     ++  C    Q   N    +  +   +++ +R  E+       + + +L+T + +N++GL  +FARR   A+ ++V DP EIR+R F+G  +R C F     D T VP  ++  +V +W+ S +++       R++ +++ + LHWA    +   E +  NP ++   +    +++VS
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVY---LSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVS 366          
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 125 bits (313), Expect = 4.180e-29
Identity = 103/322 (31.99%), Postives = 152/322 (47.20%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNINIQRAGNVS----LENGD-------VRCSKNPVYRSDFIVLSEPHKLPKSGVHMGCVSDDFCVFTFQQQN-FTFLSEPFPRDMASGLRSGEIDIELEYLKTELLFNSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWA 310
            M  IPLKSQ+ SLI+T+IS  AE   LSA+       + R L     V+VR+++ R+ ALT A+ L F  LE+  SF++DP          C  +D ++          +  +V   C      +  Q AGN+S    + NG          C K  V  +  +  +    +P   V +GCV    CVF ++  N  TF       D++  L      I L   KT + +N TGL S+FA RA D  SQ V D + +RR  F GSA   C F +  +DAT V    I  +V++W  S+ ++V      R + +++ + LHWA
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYV-VGCVGTS-CVFVYRSGNEVTFTDFVHSEDVSRVLNES---ITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKT-FSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWA 316          
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3ISI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 106 bits (265), Expect = 1.990e-22
Identity = 96/337 (28.49%), Postives = 155/337 (45.99%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIIS-RTPQDQAQFREADIVESACQVQRKNINIQRAGNVSLENGDVRCSKNPVYRSDFIVLSEPHKLPKSGVH----MGCVSD---DFCVFTFQQ-QNFTFLSEPFPRDMASGLRSGEIDIELEYLKTELLFNSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWALYVDKREGELVENNPTLS 328
            M  IPLKSQ+ SLI TI+S  AE   LSA+       + R L     V+VR+++ R+ ALT A+ L F  LE+  SFF+DPA      +  CI +D +  R        R A +V   C     ++  Q AGN+S ++G+++C        DF+  ++ H  P   V     M C+ D   + C F +      TF       D++  L +   +  L   KT + +N+TG+     RR+       V D + +RR  F G+ +  C F    + AT +    +  + V+W  SL +++        V +++ + L WA    + E     +NP ++
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAA-VVGINCLGTNTSLLWQLAGNIS-DDGEIKCG------DDFLFSADIHHSPNEPVPDEHTMECILDGELNLCAFLYSNGSEVTFTEIVLDTDLSFVLDN---NYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNF-DVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVT 325          
BLAST of Gcaud6909.t1 vs. uniprot
Match: A0A2V3ICZ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ9_9FLOR)

HSP 1 Score: 70.1 bits (170), Expect = 9.040e-10
Identity = 90/328 (27.44%), Postives = 150/328 (45.73%), Query Frame = 0
Query:    1 MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSVRNYQRRSLALTAASVLLFFILEIVV-SFFTDPATVDRFRSSPCIGIDIISRTPQDQAQFREAD---IVESACQVQRKNINIQR-AGNVSLENGDVRCSKNPVYRSDFIVLSEPHKLPKSGVHMG-----CVSDD----FCVFT-FQQQNFTFLSEPFPRDMASGLRSGEIDI-ELEYLKTELLF--NSTGLLSSFARRAADAFSQNVGDPYEIRRRAFLGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVLFEVDNLLHWA 310
            M  I +KSQ VSL IT+ +  AE  F + +    + R++  L   +S+SVR +QR      AA +  F I+EI+V +   D   +  F + PC+   I   T Q+     +     + +++C  + K+  +Q    N S+ +  V C+  PVY        E H   +S   +G     C  ++    FC FT  +   F+F            L  GE  + E +++  +L F  +S  ++S    R      ++  D   I  R  LGS    C F    N AT VP  ++ +LV  WL S++ +V +A ++R +LF+++  L W+
Sbjct:    1 MVVIGVKSQVVSLFITLATAVAELSFTTGVLLFISSREWSKLENGKSLSVRGHQRVVSQTLAACIAAFIIVEIIVGASIEDELRMTPF-TEPCVQTGI--NTGQEFTSIEQPSRSYLAQTSCS-KFKDFWLQIFLTNFSVTSTVVSCADEPVY--------ELHIRDRSRRQIGQAKPYCGENEWGVTFCSFTSLETGTFSF---------TELLDEGEKSMNETKFIDVKLFFEPDSQDIISKRLLRVI-LHGESAMDLDAILSRVLLGSRLSTCTFFKARN-ATRVPVVLMCVLVSIWLCSILLFVCVACSSRKMLFDLNKSLDWS 305          
The following BLAST results are available for this feature:
BLAST of Gcaud6909.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IMC1_9FLOR5.280e-9746.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A0_9FLOR2.070e-4633.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR1.400e-3628.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C2_9FLOR4.180e-2931.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI7_9FLOR1.990e-2228.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICZ9_9FLOR9.040e-1027.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 273..296
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..345
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..272
NoneNo IPR availableTMHMMTMhelixcoord: 10..30
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 270..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1452_length_10537_cov_5.321750contigNODE_1452_length_10537_cov_5.321750:4980..6017 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6909.t1Gcaud6909.t1Gracilaria caudata M_176_S67 malemRNANODE_1452_length_10537_cov_5.321750 4980..6017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6909.t1 ID=Gcaud6909.t1|Name=Gcaud6909.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=346bp
MATIPLKSQFVSLIITIISFFAETLFLSALHKAGNLRDFRNLCKSRSVSV
RNYQRRSLALTAASVLLFFILEIVVSFFTDPATVDRFRSSPCIGIDIISR
TPQDQAQFREADIVESACQVQRKNINIQRAGNVSLENGDVRCSKNPVYRS
DFIVLSEPHKLPKSGVHMGCVSDDFCVFTFQQQNFTFLSEPFPRDMASGL
RSGEIDIELEYLKTELLFNSTGLLSSFARRAADAFSQNVGDPYEIRRRAF
LGSAKRNCPFVSETNDATEVPTFIIVILVVSWLFSLVSYVLIAFAARNVL
FEVDNLLHWALYVDKREGELVENNPTLSYFNDDNHPVVWVSEGKM*
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