Gcaud18.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud18.t1
Unique NameGcaud18.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1037_length_14796_cov_4.334240contigNODE_1037_length_14796_cov_4.334240:4692..5222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud18Gcaud18Gracilaria caudata M_176_S67 malegeneNODE_1037_length_14796_cov_4.334240 4692..5222 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud18.t1.stop1Gcaud18.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1037_length_14796_cov_4.334240 4692..4694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud18.t1.CDS1Gcaud18.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1037_length_14796_cov_4.334240 4692..5222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud18.t1.exon1Gcaud18.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1037_length_14796_cov_4.334240 4692..5222 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud18.t1.start1Gcaud18.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1037_length_14796_cov_4.334240 5220..5222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud18.t1Gcaud18.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1037_length_14796_cov_4.334240 4692..5222 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud18.t1 ID=Gcaud18.t1|Name=Gcaud18.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MSESTLSGGHVLVNSTYHPTQRSQATDSHQPSDGWHCVNTCFRRVLQTDK
AEQLLARSDARVIDVPSYVVQQGDHHLSSQLLCNGTPMHRVEVQHSNVTA
HQLKELERGCGQHGDVQLYDIFTLELDGTAYEEHPQASLVCIDADEISLF
DDQDDDQSLSNTFDEDAKTVDYPSTP*
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spliced messenger RNA

>Gcaud18.t1 ID=Gcaud18.t1|Name=Gcaud18.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_1037_length_14796_cov_4.334240:4692..5222- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGTCAACGCTAAGCGGAGGACACGTACTTGTAAACAGTACTTA
CCACCCCACGCAACGCTCTCAAGCTACCGACTCTCATCAACCATCCGATG
GTTGGCACTGCGTCAACACCTGCTTTCGTCGTGTACTCCAGACTGACAAA
GCCGAACAATTACTTGCGCGCTCTGATGCCCGCGTGATTGATGTCCCTTC
GTATGTCGTTCAACAAGGGGACCACCACCTTTCTAGTCAACTTTTGTGTA
ATGGTACTCCTATGCATCGCGTTGAAGTGCAACATTCTAATGTTACTGCG
CACCAACTCAAAGAGTTGGAGCGTGGTTGCGGTCAACACGGCGATGTACA
GCTCTACGATATTTTCACCTTAGAGCTCGATGGTACGGCATACGAGGAAC
ACCCACAAGCTTCACTTGTTTGTATAGATGCTGATGAAATTTCTCTGTTT
GATGATCAGGACGACGATCAAAGTCTGTCAAACACATTTGACGAGGATGC
CAAGACAGTGGACTATCCGAGTACCCCTTAG
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protein sequence of Gcaud18.t1

>Gcaud18.t1 ID=Gcaud18.t1|Name=Gcaud18.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MSESTLSGGHVLVNSTYHPTQRSQATDSHQPSDGWHCVNTCFRRVLQTDK
AEQLLARSDARVIDVPSYVVQQGDHHLSSQLLCNGTPMHRVEVQHSNVTA
HQLKELERGCGQHGDVQLYDIFTLELDGTAYEEHPQASLVCIDADEISLF
DDQDDDQSLSNTFDEDAKTVDYPSTP*
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mRNA from alignment at NODE_1037_length_14796_cov_4.334240:4692..5222-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud18.t1 ID=Gcaud18.t1|Name=Gcaud18.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_1037_length_14796_cov_4.334240:4692..5222- (Gracilaria caudata M_176_S67 male)
ATGTCCGAGTCAACGCTAAGCGGAGGACACGTACTTGTAAACAGTACTTA
CCACCCCACGCAACGCTCTCAAGCTACCGACTCTCATCAACCATCCGATG
GTTGGCACTGCGTCAACACCTGCTTTCGTCGTGTACTCCAGACTGACAAA
GCCGAACAATTACTTGCGCGCTCTGATGCCCGCGTGATTGATGTCCCTTC
GTATGTCGTTCAACAAGGGGACCACCACCTTTCTAGTCAACTTTTGTGTA
ATGGTACTCCTATGCATCGCGTTGAAGTGCAACATTCTAATGTTACTGCG
CACCAACTCAAAGAGTTGGAGCGTGGTTGCGGTCAACACGGCGATGTACA
GCTCTACGATATTTTCACCTTAGAGCTCGATGGTACGGCATACGAGGAAC
ACCCACAAGCTTCACTTGTTTGTATAGATGCTGATGAAATTTCTCTGTTT
GATGATCAGGACGACGATCAAAGTCTGTCAAACACATTTGACGAGGATGC
CAAGACAGTGGACTATCCGAGTACCCCTTAG
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Coding sequence (CDS) from alignment at NODE_1037_length_14796_cov_4.334240:4692..5222-

>Gcaud18.t1 ID=Gcaud18.t1|Name=Gcaud18.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_1037_length_14796_cov_4.334240:4692..5222- (Gracilaria caudata M_176_S67 male)
ATGTCCGAGTCAACGCTAAGCGGAGGACACGTACTTGTAAACAGTACTTA
CCACCCCACGCAACGCTCTCAAGCTACCGACTCTCATCAACCATCCGATG
GTTGGCACTGCGTCAACACCTGCTTTCGTCGTGTACTCCAGACTGACAAA
GCCGAACAATTACTTGCGCGCTCTGATGCCCGCGTGATTGATGTCCCTTC
GTATGTCGTTCAACAAGGGGACCACCACCTTTCTAGTCAACTTTTGTGTA
ATGGTACTCCTATGCATCGCGTTGAAGTGCAACATTCTAATGTTACTGCG
CACCAACTCAAAGAGTTGGAGCGTGGTTGCGGTCAACACGGCGATGTACA
GCTCTACGATATTTTCACCTTAGAGCTCGATGGTACGGCATACGAGGAAC
ACCCACAAGCTTCACTTGTTTGTATAGATGCTGATGAAATTTCTCTGTTT
GATGATCAGGACGACGATCAAAGTCTGTCAAACACATTTGACGAGGATGC
CAAGACAGTGGACTATCCGAGTACCCCTTAG
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