Gcaud3083.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3083.t1
Unique Name	Gcaud3083.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_143_length_44032_cov_4.581120	contig	NODE_143_length_44032_cov_4.581120:13326..14537 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	71139.XP_010023706.1
PFAMs	Methyltransf_28
Max annot lvl	35493\|Streptophyta
Evalue	1.58e-42
EggNOG OGs	2CMRH@1\|root,2QRKD@2759\|Eukaryota,37HTZ@33090\|Viridiplantae,3G86H@35493\|Streptophyta
Description	Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3083	Gcaud3083	Gracilaria caudata M_176_S67 male	gene	NODE_143_length_44032_cov_4.581120 13326..14537 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3083.t1.stop1	Gcaud3083.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_143_length_44032_cov_4.581120 13326..13328 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3083.t1.CDS1	Gcaud3083.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_143_length_44032_cov_4.581120 13326..14537 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3083.t1.exon1	Gcaud3083.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_143_length_44032_cov_4.581120 13326..14537 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3083.t1.start1	Gcaud3083.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_143_length_44032_cov_4.581120 14535..14537 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3083.t1	Gcaud3083.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_143_length_44032_cov_4.581120 13326..14537 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_143_length_44032_cov_4.581120:13326..14537-
coding sequence from alignment at NODE_143_length_44032_cov_4.581120:13326..14537-

mRNA sequence

>Gcaud3083.t1 ID=Gcaud3083.t1|Name=Gcaud3083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=404bp
MNMRRTLCNRSGPIKVILFRDYIHDSLYSPRTGYFSSETPPLLQHGRQLK
LNRILSKSAYQDALASLTRNKLGWMTPVELFSPHLSRAIANRLERSAPKD
GPINVIEIGAGRGTLAKDILQYWERTPDLKRRANYFTVEVSEVLAKVQES
ALQQWISKGKAKVVNTNALTWFRSEATRIEGHVHVIATEVLDNLPHDLVR
DGEVLEQAEVVYTENGQRYMQWSKCTDEQILSAIDTYGVLESNRIQTWSS
AIQERFEIALGGGSRNIWVPTASFSLLKGIVSSLPRAHLTLTDFDSFAGA
MPGVNGPVVQSVRGGAAVVYDDVHSAPFGKVDIMFPTDFYSFADGHASFF
KEGTDFSRIVMKQRDFFEAYAPRKEIERSTCQDGYNPIVHDFTNVSYLLV
DPA*

spliced messenger RNA

>Gcaud3083.t1 ID=Gcaud3083.t1|Name=Gcaud3083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:13326..14537- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATGAGACGAACTCTCTGTAACCGCTCTGGTCCTATCAAGGTTAT
TCTCTTTCGCGATTATATCCACGATAGTTTGTATAGTCCCAGGACTGGAT
ACTTTTCCAGTGAAACGCCGCCACTTCTTCAACACGGACGCCAGTTAAAG
CTCAACAGAATTTTGTCGAAGTCGGCCTACCAAGATGCTCTAGCATCGTT
GACGAGGAACAAGCTCGGATGGATGACTCCCGTTGAGCTTTTCTCGCCTC
ATCTTTCTCGCGCGATTGCGAATCGTCTCGAGCGATCTGCCCCCAAAGAT
GGGCCTATCAATGTCATCGAGATCGGAGCAGGACGCGGAACCCTAGCCAA
GGATATCTTGCAATACTGGGAGCGAACGCCTGATTTGAAACGAAGAGCTA
ACTACTTTACCGTCGAAGTATCGGAAGTATTGGCAAAGGTTCAGGAGAGT
GCATTGCAACAGTGGATCAGTAAAGGAAAGGCTAAAGTTGTCAATACAAA
TGCCTTGACGTGGTTTCGTTCTGAGGCTACACGGATTGAAGGCCATGTCC
ATGTAATCGCTACCGAAGTCCTTGATAATTTGCCACACGACCTCGTGCGT
GACGGCGAAGTACTTGAGCAAGCCGAAGTAGTTTATACCGAAAATGGACA
ACGCTATATGCAGTGGTCTAAATGTACGGACGAGCAGATTTTGTCCGCCA
TTGATACATATGGAGTACTGGAAAGCAATCGAATACAAACCTGGAGTAGC
GCAATTCAAGAGCGGTTTGAAATTGCTCTAGGTGGTGGAAGCCGTAATAT
ATGGGTACCCACGGCCTCGTTCTCTTTGTTAAAGGGCATCGTTTCATCGC
TACCTCGCGCTCACTTGACATTGACCGACTTTGACAGTTTTGCTGGAGCT
ATGCCAGGGGTTAACGGTCCAGTAGTACAGAGTGTACGCGGAGGAGCAGC
GGTTGTATACGATGACGTTCATTCCGCCCCGTTCGGGAAAGTGGATATTA
TGTTTCCTACTGATTTCTACTCATTTGCCGATGGTCATGCATCTTTTTTC
AAGGAAGGGACTGACTTTTCACGAATCGTAATGAAACAGCGAGATTTCTT
TGAAGCATACGCTCCCCGAAAAGAAATAGAGAGAAGTACGTGCCAGGATG
GATATAACCCAATTGTTCATGACTTCACGAACGTATCTTATTTGCTGGTA
GACCCTGCTTAA

protein sequence of Gcaud3083.t1

>Gcaud3083.t1 ID=Gcaud3083.t1|Name=Gcaud3083.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=404bp
MNMRRTLCNRSGPIKVILFRDYIHDSLYSPRTGYFSSETPPLLQHGRQLK
LNRILSKSAYQDALASLTRNKLGWMTPVELFSPHLSRAIANRLERSAPKD
GPINVIEIGAGRGTLAKDILQYWERTPDLKRRANYFTVEVSEVLAKVQES
ALQQWISKGKAKVVNTNALTWFRSEATRIEGHVHVIATEVLDNLPHDLVR
DGEVLEQAEVVYTENGQRYMQWSKCTDEQILSAIDTYGVLESNRIQTWSS
AIQERFEIALGGGSRNIWVPTASFSLLKGIVSSLPRAHLTLTDFDSFAGA
MPGVNGPVVQSVRGGAAVVYDDVHSAPFGKVDIMFPTDFYSFADGHASFF
KEGTDFSRIVMKQRDFFEAYAPRKEIERSTCQDGYNPIVHDFTNVSYLLV
DPA*

mRNA from alignment at NODE_143_length_44032_cov_4.581120:13326..14537-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3083.t1 ID=Gcaud3083.t1|Name=Gcaud3083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:13326..14537- (Gracilaria caudata M_176_S67 male)
ATGAACATGAGACGAACTCTCTGTAACCGCTCTGGTCCTATCAAGGTTAT
TCTCTTTCGCGATTATATCCACGATAGTTTGTATAGTCCCAGGACTGGAT
ACTTTTCCAGTGAAACGCCGCCACTTCTTCAACACGGACGCCAGTTAAAG
CTCAACAGAATTTTGTCGAAGTCGGCCTACCAAGATGCTCTAGCATCGTT
GACGAGGAACAAGCTCGGATGGATGACTCCCGTTGAGCTTTTCTCGCCTC
ATCTTTCTCGCGCGATTGCGAATCGTCTCGAGCGATCTGCCCCCAAAGAT
GGGCCTATCAATGTCATCGAGATCGGAGCAGGACGCGGAACCCTAGCCAA
GGATATCTTGCAATACTGGGAGCGAACGCCTGATTTGAAACGAAGAGCTA
ACTACTTTACCGTCGAAGTATCGGAAGTATTGGCAAAGGTTCAGGAGAGT
GCATTGCAACAGTGGATCAGTAAAGGAAAGGCTAAAGTTGTCAATACAAA
TGCCTTGACGTGGTTTCGTTCTGAGGCTACACGGATTGAAGGCCATGTCC
ATGTAATCGCTACCGAAGTCCTTGATAATTTGCCACACGACCTCGTGCGT
GACGGCGAAGTACTTGAGCAAGCCGAAGTAGTTTATACCGAAAATGGACA
ACGCTATATGCAGTGGTCTAAATGTACGGACGAGCAGATTTTGTCCGCCA
TTGATACATATGGAGTACTGGAAAGCAATCGAATACAAACCTGGAGTAGC
GCAATTCAAGAGCGGTTTGAAATTGCTCTAGGTGGTGGAAGCCGTAATAT
ATGGGTACCCACGGCCTCGTTCTCTTTGTTAAAGGGCATCGTTTCATCGC
TACCTCGCGCTCACTTGACATTGACCGACTTTGACAGTTTTGCTGGAGCT
ATGCCAGGGGTTAACGGTCCAGTAGTACAGAGTGTACGCGGAGGAGCAGC
GGTTGTATACGATGACGTTCATTCCGCCCCGTTCGGGAAAGTGGATATTA
TGTTTCCTACTGATTTCTACTCATTTGCCGATGGTCATGCATCTTTTTTC
AAGGAAGGGACTGACTTTTCACGAATCGTAATGAAACAGCGAGATTTCTT
TGAAGCATACGCTCCCCGAAAAGAAATAGAGAGAAGTACGTGCCAGGATG
GATATAACCCAATTGTTCATGACTTCACGAACGTATCTTATTTGCTGGTA
GACCCTGCTTAA

Coding sequence (CDS) from alignment at NODE_143_length_44032_cov_4.581120:13326..14537-

>Gcaud3083.t1 ID=Gcaud3083.t1|Name=Gcaud3083.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1212bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:13326..14537- (Gracilaria caudata M_176_S67 male)
ATGAACATGAGACGAACTCTCTGTAACCGCTCTGGTCCTATCAAGGTTAT
TCTCTTTCGCGATTATATCCACGATAGTTTGTATAGTCCCAGGACTGGAT
ACTTTTCCAGTGAAACGCCGCCACTTCTTCAACACGGACGCCAGTTAAAG
CTCAACAGAATTTTGTCGAAGTCGGCCTACCAAGATGCTCTAGCATCGTT
GACGAGGAACAAGCTCGGATGGATGACTCCCGTTGAGCTTTTCTCGCCTC
ATCTTTCTCGCGCGATTGCGAATCGTCTCGAGCGATCTGCCCCCAAAGAT
GGGCCTATCAATGTCATCGAGATCGGAGCAGGACGCGGAACCCTAGCCAA
GGATATCTTGCAATACTGGGAGCGAACGCCTGATTTGAAACGAAGAGCTA
ACTACTTTACCGTCGAAGTATCGGAAGTATTGGCAAAGGTTCAGGAGAGT
GCATTGCAACAGTGGATCAGTAAAGGAAAGGCTAAAGTTGTCAATACAAA
TGCCTTGACGTGGTTTCGTTCTGAGGCTACACGGATTGAAGGCCATGTCC
ATGTAATCGCTACCGAAGTCCTTGATAATTTGCCACACGACCTCGTGCGT
GACGGCGAAGTACTTGAGCAAGCCGAAGTAGTTTATACCGAAAATGGACA
ACGCTATATGCAGTGGTCTAAATGTACGGACGAGCAGATTTTGTCCGCCA
TTGATACATATGGAGTACTGGAAAGCAATCGAATACAAACCTGGAGTAGC
GCAATTCAAGAGCGGTTTGAAATTGCTCTAGGTGGTGGAAGCCGTAATAT
ATGGGTACCCACGGCCTCGTTCTCTTTGTTAAAGGGCATCGTTTCATCGC
TACCTCGCGCTCACTTGACATTGACCGACTTTGACAGTTTTGCTGGAGCT
ATGCCAGGGGTTAACGGTCCAGTAGTACAGAGTGTACGCGGAGGAGCAGC
GGTTGTATACGATGACGTTCATTCCGCCCCGTTCGGGAAAGTGGATATTA
TGTTTCCTACTGATTTCTACTCATTTGCCGATGGTCATGCATCTTTTTTC
AAGGAAGGGACTGACTTTTCACGAATCGTAATGAAACAGCGAGATTTCTT
TGAAGCATACGCTCCCCGAAAAGAAATAGAGAGAAGTACGTGCCAGGATG
GATATAACCCAATTGTTCATGACTTCACGAACGTATCTTATTTGCTGGTA
GACCCTGCTTAA