Gcaud3090.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3090.t1
Unique NameGcaud3090.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_143_length_44032_cov_4.581120contigNODE_143_length_44032_cov_4.581120:37920..38549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703006.1
PFAMsPeptidase_C97
Max annot lvl2759|Eukaryota
Evalue3.32e-45
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
DescriptionLys63-specific deubiquitinase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3090Gcaud3090Gracilaria caudata M_176_S67 malegeneNODE_143_length_44032_cov_4.581120 37920..38549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3090.t1.stop1Gcaud3090.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_143_length_44032_cov_4.581120 37920..37922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3090.t1.CDS1Gcaud3090.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_143_length_44032_cov_4.581120 37920..38549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3090.t1.exon1Gcaud3090.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_143_length_44032_cov_4.581120 37920..38549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3090.t1.start1Gcaud3090.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_143_length_44032_cov_4.581120 38547..38549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3090.t1Gcaud3090.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_143_length_44032_cov_4.581120 37920..38549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3090.t1 ID=Gcaud3090.t1|Name=Gcaud3090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MSPSDELSTPPLPPGPGVPVELNVYDLQHPESPDAVSNINGYLYAFGVGL
YHSGVCVYGVEYAYGGHPHAHTGVFTTRPKKAPDARFRQTLLIGFTRLST
EQVKELVDAMSTVWLGNTYNLLTRNCNHFASDLCEKLTGKCAPEWVNRLA
WFGEKAKFLLPKGFDTPMAAPVTAERAREEQELRELMEGALTDEDEYQND
NLRDPDHDQ*
back to top

spliced messenger RNA

>Gcaud3090.t1 ID=Gcaud3090.t1|Name=Gcaud3090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:37920..38549- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTCCGACGAGCTTTCCACGCCGCCGCTGCCGCCCGGACCGGG
CGTCCCGGTCGAGCTTAACGTTTACGACCTCCAGCATCCAGAAAGCCCCG
ACGCCGTCTCCAATATCAACGGCTATCTGTATGCATTTGGTGTTGGTCTT
TATCATAGTGGCGTCTGCGTGTACGGCGTCGAGTATGCATATGGAGGTCA
TCCTCACGCCCACACAGGCGTCTTCACCACGCGTCCCAAGAAGGCTCCCG
ACGCTCGTTTCCGACAAACTTTGCTCATCGGCTTCACTCGACTATCCACC
GAGCAGGTGAAGGAGCTTGTTGACGCCATGTCCACCGTGTGGCTGGGCAA
CACCTATAACTTGCTCACTAGGAATTGTAACCACTTTGCGAGTGACCTTT
GCGAAAAGCTCACGGGAAAATGCGCTCCTGAGTGGGTCAATCGTCTGGCT
TGGTTTGGTGAGAAGGCGAAGTTTTTGTTGCCAAAAGGGTTTGATACTCC
TATGGCTGCTCCCGTCACTGCCGAACGAGCACGGGAGGAGCAGGAATTGC
GTGAACTCATGGAAGGCGCGCTTACAGACGAAGACGAGTATCAAAATGAC
AATTTAAGAGATCCCGATCACGACCAGTGA
back to top

protein sequence of Gcaud3090.t1

>Gcaud3090.t1 ID=Gcaud3090.t1|Name=Gcaud3090.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MSPSDELSTPPLPPGPGVPVELNVYDLQHPESPDAVSNINGYLYAFGVGL
YHSGVCVYGVEYAYGGHPHAHTGVFTTRPKKAPDARFRQTLLIGFTRLST
EQVKELVDAMSTVWLGNTYNLLTRNCNHFASDLCEKLTGKCAPEWVNRLA
WFGEKAKFLLPKGFDTPMAAPVTAERAREEQELRELMEGALTDEDEYQND
NLRDPDHDQ*
back to top

mRNA from alignment at NODE_143_length_44032_cov_4.581120:37920..38549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3090.t1 ID=Gcaud3090.t1|Name=Gcaud3090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:37920..38549- (Gracilaria caudata M_176_S67 male)
ATGTCTCCGTCCGACGAGCTTTCCACGCCGCCGCTGCCGCCCGGACCGGG
CGTCCCGGTCGAGCTTAACGTTTACGACCTCCAGCATCCAGAAAGCCCCG
ACGCCGTCTCCAATATCAACGGCTATCTGTATGCATTTGGTGTTGGTCTT
TATCATAGTGGCGTCTGCGTGTACGGCGTCGAGTATGCATATGGAGGTCA
TCCTCACGCCCACACAGGCGTCTTCACCACGCGTCCCAAGAAGGCTCCCG
ACGCTCGTTTCCGACAAACTTTGCTCATCGGCTTCACTCGACTATCCACC
GAGCAGGTGAAGGAGCTTGTTGACGCCATGTCCACCGTGTGGCTGGGCAA
CACCTATAACTTGCTCACTAGGAATTGTAACCACTTTGCGAGTGACCTTT
GCGAAAAGCTCACGGGAAAATGCGCTCCTGAGTGGGTCAATCGTCTGGCT
TGGTTTGGTGAGAAGGCGAAGTTTTTGTTGCCAAAAGGGTTTGATACTCC
TATGGCTGCTCCCGTCACTGCCGAACGAGCACGGGAGGAGCAGGAATTGC
GTGAACTCATGGAAGGCGCGCTTACAGACGAAGACGAGTATCAAAATGAC
AATTTAAGAGATCCCGATCACGACCAGTGA
back to top

Coding sequence (CDS) from alignment at NODE_143_length_44032_cov_4.581120:37920..38549-

>Gcaud3090.t1 ID=Gcaud3090.t1|Name=Gcaud3090.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:37920..38549- (Gracilaria caudata M_176_S67 male)
ATGTCTCCGTCCGACGAGCTTTCCACGCCGCCGCTGCCGCCCGGACCGGG
CGTCCCGGTCGAGCTTAACGTTTACGACCTCCAGCATCCAGAAAGCCCCG
ACGCCGTCTCCAATATCAACGGCTATCTGTATGCATTTGGTGTTGGTCTT
TATCATAGTGGCGTCTGCGTGTACGGCGTCGAGTATGCATATGGAGGTCA
TCCTCACGCCCACACAGGCGTCTTCACCACGCGTCCCAAGAAGGCTCCCG
ACGCTCGTTTCCGACAAACTTTGCTCATCGGCTTCACTCGACTATCCACC
GAGCAGGTGAAGGAGCTTGTTGACGCCATGTCCACCGTGTGGCTGGGCAA
CACCTATAACTTGCTCACTAGGAATTGTAACCACTTTGCGAGTGACCTTT
GCGAAAAGCTCACGGGAAAATGCGCTCCTGAGTGGGTCAATCGTCTGGCT
TGGTTTGGTGAGAAGGCGAAGTTTTTGTTGCCAAAAGGGTTTGATACTCC
TATGGCTGCTCCCGTCACTGCCGAACGAGCACGGGAGGAGCAGGAATTGC
GTGAACTCATGGAAGGCGCGCTTACAGACGAAGACGAGTATCAAAATGAC
AATTTAAGAGATCCCGATCACGACCAGTGA
back to top